G188395


Basic Information

Item Value
gene id G188395
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26427368 ~ 26575866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU223002
AAAACTATAGCGTGGGATATCGACAAAGAGATCACTCgcaaagagacaaagagatcACTCGcacaccattaaaaaaaataaataaataaataaaaaatcatggCGTGGTATTATCAATTTTTACAACGTatctaataaatatttcattaagaATAATCatagaaaacacacacttacctttAGTCGGTTTAGTTTCGTAGTTTAGCAAAGCGGATGATTTACGGCTTTTTTTCAGCGCTGCAAGCTAAATTCTTTAGTTTAAGATTAAGTAGTTTCTCCGTGCTAAACTTATCAGAGTTAAAGGAAGTGATTGCGATGAAAGACAGAAGCTAAGGTTGCCGTTCAAGCACTGTTGAAGCGGAGAACCTTCTCTCTGTCCAGGAGCTGGGATCGATGTGACATTGAGCCGTCGCG
>TU223004
AAAACTATAGCGTGGGATATCGACAAAGAGATCACTCgcaaagagacaaagagatcACTCGcacaccattaaaaaaaataaataaataaataaaaaatcatggCGTGGTATTATCAATTTTTACAACGTatctaataaatatttcattaagaATAATCatagaaaacacacacttacctttAGTCGGTTTAGTTTCGTAGTTTAGCAAAGCGGATGATTTACGGCTTTTTTTCAGCGCTGCAAGCTAAATTCTTTAGTTTAAGATTAAGTAGTTTCTCCGTGCTAAACTTATCAGAGTTAAAGGAAGTGATTGCGATGAAAGACAGAAGCTAAGGTTGCCGTTCAAGCACTGTTGAAGCGGAGAACCTTCTCTCTGTCCAGGAGCTGGGATCGATGTGCGGATGATTTACGGCTTTTTTTTCAGCGCTGCAAGCTAAATTCTTTAGTTTAAGATTAAGTAGTTTCTCCGTGCTAAACTTATCAGAGTTAAAGGAAGTGATTGCGATGAAAGACAGAAGCTAAGGTTGCCGTTCAAGCACTGTTGAAGCGGAGAACCTTCTCTCTGTCCAGGAGCTGGGATCGATGTGTCCTGGAGGAAATTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223002 False 414 lncRNA 0.37 3 26427368 26575308
TU223004 True 604 lncRNA 0.39 4 26427368 26575866

Neighbor

gene id symbol gene type direction distance location
LOC117598406 sdhaf2,LOC107685224 coding upstream 182648 26241072 ~ 26244720 (+)
LOC113524556 sdhaf2,LOC107685224 coding upstream 199452 26223817 ~ 26227916 (+)
helz2a helz2 coding upstream 288749 26099524 ~ 26138619 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding upstream 332230 26083657 ~ 26095138 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding upstream 364712 26039386 ~ 26062656 (+)
LOC117598395 NA non-coding upstream 5869 26420374 ~ 26421499 (+)
LOC117598393 NA non-coding upstream 6995 26419606 ~ 26420373 (+)
G188202 NA non-coding upstream 204447 26218931 ~ 26222921 (+)
G188179 LOC108270676,LOC108439640 non-coding upstream 260576 26153529 ~ 26166792 (+)
G188184 NA non-coding upstream 262612 26161314 ~ 26164756 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other upstream 75333 26260530 ~ 26352035 (+)
polr2l polr2l other upstream 215253 26185862 ~ 26212115 (+)
G188164 NA other upstream 217358 26206942 ~ 26210010 (+)
LOC113523924 nell1 other upstream 730496 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1858725 24563400 ~ 24568643 (+)

Expression


Co-expression Network