G188396


Basic Information

Item Value
gene id G188396
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26521413 ~ 26574817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU223005
tacagGATCCAGcaacttttttatttgattgGAATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACATCTGAAGAGACACAGTAAGAATAATGCATGTTTAACCATGACTCAAATAATAAGTCATGTGACTAACGGGATGTCCAAAGTCCAGTTCTTTCTACCCCAACTGACTCAGCTCTGATTACACTGGAAGTTTACAGTGGTGGTTTCTGCCCTTTGTTCAGAGCAGATAAAACCCTGCAGAACAAGTCTAGCCAGCTGAAGAAGTTCGTCTATTCCTGCTTTGTGAAGGACGTTGGCAAGCTCGGCCAAACCAGACCCTGGGATTTCCTCTTTTCATAATTCTTTTCGAttgtgtgtgctaatattttgaaacagTTCTG
>TU223006
tacagGATCCAGcaacttttttatttgattgGAATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACGTGAGGGTCGTTGTGATCAGAGGCCACCTTGTGCAGGTCCAGCAGGGACTGGTTAACATTCTTCTCCAGCTGTAGTGCGCACTCCAGGGCCTCCACGCCGCTGCCCCACTCGTCACGCTCCGGTTTCTGTCACGCACACAagcaaagaaacacaaacaagtcAATAACAACAGCTGCATTTCCCCATTCTCTCCTTCATAGAAATATTTCaacttttaattgtttttatctTTCTACAGTGTTATCTTCCTTCAGCCTGCTGGCCATTTTAACCCACTTGGAGCTTTACTGACTCTGAACGATAAGAACTCCACCCAAACAAACTGTCGGTATCTGCACTTCGCTTCATGCCACTCCCTAACAGAGCTCTCGTTGTTGAGTATTTACTGCCAGTGTGATAAAGCAGCATGTCACTACTTTAAAACAACCTTTAAAACAACCTTTAAAATCAAAGTGTGCATAGCTAGATGCTAGAAAAGAACAGCATGCTACTGTAGCTAGCTGCAATGTAAATTAGGGGATCGTAATGTGTCAGTAACTACGAACAGGACATGATGTGTAGCGATGCCAGAGAAACCTGCATATCTCCTGCTCCAAAGGCTAAGAGAACTGCCTTCTAACTTTTGAGATGTTTCAGACGTGTAGCAGTGTATGCAACACAGCTAATATTTTAGCACTTCCCCTAGCCAACTAATTCACTCTGCTAGAACACCAGCCCTGCTTCCATCACGTGCTGTTTAAGGTCAGTTTCATCATAGCATCAAGAGATTTTTTCTCCTTACACGATAATTacctaaaaaaaatctctcatgaaaactgaaaattcCCTTGACTACATGTGCTCATTTTCAgtttaacatatatattttttaaattatgcttttttttttttttttttttttttttttaaaaaatgtacccTGATGTCCTGCAGGAAGATTCTTCCTCCCCTCTGGTTCTGGACTTTCATcagtttctctgcatgctcGCGCTCCTCGTGCGACTGCTTGCGGAAAAACTTGGCAAAGTTGTGCAGAGCCTGGTCGTCTCTGTCGAAGAAGTAcgactgaaaaaaataaataaaaaaaagttactcaTTTACACACTGAACTCAGTGCGCCTTCCCATCATGCATCACTCCATGGGTAATAAACCCCCCTCCCCCCTTCCTCTGTACAGATTAGATAACTAAACCCATACCCATTCGGACCATGTGACAGCAAAACATTTCCACTCTTTTGTCTTTGTGAACGACCTTTTTTTGACTTGCATTTCATTATTGCCTTTTATAGAACTGTCTCCTTTTTTTGTTAATTCTTGATTCTTCTTATAGGATTCTCATGTATTATATCATGTATTATTTTTCCCCCTCCACTGTGAGAAGACGATGATCCGTATCCGAAACTCTTACCATGGACAGGTAGACGTAGGAAGCGTACATCTCCAGGTTGATCTGCCGGTTGATGGCAGCCTCGCAGTCCTGGTGGAAATTCTGTCTCCAGGTTGATCTGCCGGTTGATGGCAGCCTCGCAGTCCTGGTGGAAATTCTGTCTCACCTGAGAGCTCATGttgctacaaacacacacacacacacacaagagactGATTACAGAAGAGTAGGCACTGCGCAGTGAAACATTTCAACTGATCTTGGTCTAAACGTTCTTGCAGTAAGACGAAAGAACAAACGGTGTTTCTGGAATAATGACTTCTTGTCCTAGTGGAGACTTTAACATGtcatctctacactctgtaggAAGCACTTACACAATCTCACTTCTAATACAATCCTAGgtttcaggaaacaacaacagcGAACTCAAAAGGAATCCACTTCTAAATACAATGTTTAAAACGTTACGTAACGTGAGGTGACTAACAGCACATTACTGAGCAAAACCACGCGTGACTGGTTACACCACGTATCCTTTTACGTCTGAAGTGAGCGATGACCTCAGAGTGACTGTGCAAAAACCTTAAACACGATACGGTTCAGTGTGAAGGGTGCTGTAGTGTAAACCATGAACAGATTCACCAGTACTGGATACCGTCACGTCCGTACACACCTAGTGCTCCTGTACACACTCGCTGCGCACTCGGAGACGCGACACTACAGGCAACGTCACGCTCTAATTACAGCTTTCAAAGCCATCAAGAACACGCAGCGTGACCCAGTCATTATTACTGCTCACCTGACAGATGGCTAGACACGggtttgtgtgtgatttctgaAGAAGCAGgaagcttcacacacacacacacacgctatcaGCTGTTCTAGTAAACCTTTACGAGGTGAGACCTTGCGCTACACCACAGCTGAAGCTTTGCGCACGGCGGATGAATCTGACGTGTAGTTAAAGGTAAACAGGCACTTAAACACAAgtcaccctgaaacacattaaactgGACTGTACTGTGACGTCACAGAGCGACACTCATCTCAGTCTACAGCGGCGTTTACCAGAACGaaaaacacacaggaaaagggaaagtgtgtgttttctctcgtTCAACgtcacattaatgagaaatgcaGAAAGTCTGTGAGAAGCGAAGCGGTGTTCGGCGGAGGAGGAGCGTACGacagactaaagcgccgctgcatcgttCTCGTTAGGGAGATTAAAGACGTCATGTTGATTAGCAATACTGACACGCAGGCGGTTCCTCTTcctcacactcaaacacacctgaGCTCATAAAGTAATGGATAAGGCCTTCCTGAGCGCGTTTTACAGCTGCACAGGGTGACACAGCGTTTCTCTTATCGCCGCTTTACGATAAAGGACACAATCACGAGGCCCACGCAGCCGCCTGGCTTCCTCAGATATCAGCTTCAGCTTTCTCCGCTGGACGACGGGCGAAGTCCAGCGCAACCCGGAGCACGGGCAGGACAAGCGTTTCCCCAGACACCCGACTGTCACTGGACCACCAAGGCTGTGATCATGTAATCCAGCggttctcacacactctcacacactcacacacacacacacactcactcactcacactgcgGCCTTTCCCAGATCACCTTCACGTTATTTAATCTGCCTCGGATTACACTTCATCCACCGTCACACTTTCACGCTCACGTCAAAAACATgacgtttattttatttatttattcatttgttgttAGTTATGTAAATCACTGGCCTTAGCGGCCtaacgcgcgcgcgcacacaaaGCGTCGTGTTGTtttcgttgtttttttttttgttcctaaCCGTATTCTGAT
>TU223007
tacagGATCCAGcaacttttttatttgattgGAATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACATCTGAGGTCGTTGTGATCAGAGGCCACCTTGTGCAGGTCCAGCAGGGACTGGTTAACATTCTTCTCCAGCTGTAGTGCGCACTCCAGAGCCTCCACACCGCTGCCCCACTCGTCACGCTCCGGTTTCTGTCACGCACACAagcaaagaaacacaaacaagtcaataacaacaacagctgCATTTCCCCATTCTCTGCTTC
>TU223011
tttttttcagGATCCAgcaactttttttatttgattggaATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACATCTGAAGAGACACAGTAAGAATAATGCATGTTTAACCATGACTCAAATAATAAGTCATGTGACTAACGGGATGTCCAAAGTCCAGTTCTTTCTACCCCAACTGACTCAGCTCTGATTACACTGGAAGTTTACAGTGGTGGTTTCTGCCCTTTGTTCAGAGCAGATAAAACCCTGCAGAACAAGTCTAGCCAGCTGAAGAAGTTCGTCTATTCCTGCTTTGTGAAGGACGTTGGCAAGCTCGGCCAAACCAGACCCTGGGATTTCCTCTTTTCATAATTCTTTTCGAttgtgtgtgctaatattttgaaacagTTCTG
>TU223013
tacagGATCCAGcaacttttttatttgattgGAATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACATCTGAAGAGACACAGTAAGAATAATGCATGTTTAACCATGACTCAAATAATAAGTCATGTGACTAACGGGATGTCCAAAGTCCAGTTCTTTCTACCCCAACTGACTCAGCTCTGATTACACTGGAAGTTTACAGTGGTGGTTTCTGCCCTTTGTTCAGAGCAGATAAAACCCTGCAGAACAAGTCTAGCCAGCTGAAGAAGTTCGTCTATTCCTGCTTTGTGAAGGACGTTGGCAAGCTCGGCCAAACCAGACCCTGGGATTTCCTCTTTTCATAATTCTTTTCGAttgtgtgtgctaatattttgaaacagTTCTG
>TU223014
tacagGATCCAGcaacttttttatttgattgGAATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACGTGAGGGTCGTTGTGATCAGAGGCCACCTTGTGCAGGTCCAGCAGGGACTGGTTAACATTCTTCTCCAGCTGTAGTGCGCACTCCAGGGCCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACATCTGAAGAGACACAGTAAGAATAATGCATGTTTAACCATGACTCAAATAATAAGTCATGTGACTAACGGGATGTCCAAAGTCCAGTTCTTTCTACCCCAACTGACTCAGCTCTGATTACACTGGAAGTTTACAGTGGTGGTTTCTGCCCTTTGTTCAGAGCAGATAAAACCCTGCAGAACAAGTCTAGCCAGCTGAAGAAGTTCGTCTATTCCTGCTTTGTGAAGGACGTTGGCAAGCTCGGCCAAACCAGACCCTGGGATTTCCTCTTTTCATAATTCTTTTCGAttgtgtgtgctaatattttgaaacagTTCTG
>TU223015
tacagGATCCAGcaacttttttatttgattgGAATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACATCTGAAGAGACACAGTAAGAATAATGCATGTTTAACCATGACTCAAATAATAAGTCATGTGACTAACGGGATGTCCAAAGTCCAGTTCTTTCTACCCCAACTGACTCAGCTCTGATTACACTGGAAGTTTACAGTGGTGGTTTCTGCCCTTTGTTCAGAGCAGATAAAACCCTGCAGAACAAGTCTAGCCAGCTGAAGAAGTTCGTCTATTCCTGCTTTGTGAAGGACGTTGGCAAGCTCGGCCAAACCAGACCCTGGGATTTCCTCTTTTCATAATTCTTTTCGAttgtgtgtgctaatattttgaaacagTTCTG
>TU223016
tacagGATCCAGcaacttttttatttgattgGAATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGcagGATCCAgcaactttttttatttgattggaATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACATCTGAAGAGACACAGTAAGAATAATGCATGTTTAACCATGACTCAAATAATAAGTCATGTGACTAACGGGATGTCCAAAGTCCAGTTCTTTCTACCCCAACTGACTCAGCTCTGATTACACTGGAAGTTTACAGTGGTGGTTTCTGCCCTTTGTTCAGAGCAGATAAAACCCTGCAGAACAAGTCTAGCCAGCTGAAGAAGTTCGTCTATTCCTGCTTTGTGAAGGACGTTGGCAAGCTCGGCCAAACCAGACCCTGGGATTTCCTCTTTTCATAATTCTTTTCGAttgtgtgtgctaatattttgaaacagTTCTG
>TU223018
tacagGATCCAGcaacttttttatttgattgGAATACAACTTCAGCAATAAAACAGCACATTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTCAGGTAAATGACAAATCACGAGCAACAGGAAGCAAGCTGGAGCTGAAAACTGAGAGCGTCTAACTGGACCACCGTGTGGTAGAAGAATGGAAAAAGGAAGATGGCAGGATGGTGTAAGTGAAGGTGGCGTGGAGGCGATTTAGCTGCTCTCGCTGCCCAGCGTGTGTTTATCAAACAGATATTCAGCCATGCCGTTCTGAGGCGCTCCCATACGGCGCAGGTTAGCCACCCAATCAGCAAGCTCCTTAATGGACTTCACCTGTTCGTCCAGGTAGTGCGTCTCAATGAAGTCACACATCTGAAGAGACACAGTAAGAATAATGCATGTTTAACCATGACTCAAATAATAAGTCATGTGACTAACGGGATGTCCAAAGTCCAGTTCTTTCTACCCCAACTGACTCAGCTCTGATTACACTGGAAGTTTACAGTGGTGGTTTCTGCCCTTTGTTCAGAGCAGATAAAACCCTGCAGAACAAGTCTAGCCAGCTGAAGAAGTTCGTCTATTCCTGCTTTGTGAAGGACGTTGGCAAGCTCGGCCAAACCAGACCCTGGGATTTCCTCTTTTCATAATTCTTTTCGAttgtgtgtgctaatattttgaaacagTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223005 False 859 lncRNA 0.46 2 26521413 26571083
TU223006 True 3600 lncRNA 0.45 3 26521413 26574817
TU223007 False 651 lncRNA 0.50 3 26521413 26571834
TU223011 False 682 lncRNA 0.45 2 26568416 26571083
TU223013 False 881 lncRNA 0.47 2 26521413 26571083
TU223014 False 914 lncRNA 0.48 3 26521413 26571083
TU223015 False 676 lncRNA 0.45 2 26521413 26571083
TU223016 False 841 lncRNA 0.45 2 26521413 26571083
TU223018 False 922 lncRNA 0.47 2 26521413 26571083

Neighbor

gene id symbol gene type direction distance location
rplp2l rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873 coding upstream 4114 26514550 ~ 26517299 (+)
LOC117598404 LOC107716903 coding upstream 29640 26491117 ~ 26491773 (+)
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding upstream 92312 26421913 ~ 26429101 (+)
LOC117598406 sdhaf2,LOC107685224 coding upstream 276693 26241072 ~ 26244720 (+)
LOC113524556 sdhaf2,LOC107685224 coding upstream 293497 26223817 ~ 26227916 (+)
LOC117598392 LOC108270747,LOC108273219,LOC108273545,LOC108261282,LOC108273546,LOC108274210,LOC108261633,LOC108263642,LOC108268260,LOC108273691 non-coding upstream 10006 26445979 ~ 26511407 (+)
LOC117598394 NA non-coding upstream 84694 26429135 ~ 26436719 (+)
LOC117598395 NA non-coding upstream 99914 26420374 ~ 26421499 (+)
LOC117598393 NA non-coding upstream 101040 26419606 ~ 26420373 (+)
G188202 NA non-coding upstream 298492 26218931 ~ 26222921 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other upstream 169378 26260530 ~ 26352035 (+)
polr2l polr2l other upstream 309298 26185862 ~ 26212115 (+)
G188164 NA other upstream 311403 26206942 ~ 26210010 (+)
LOC113523924 nell1 other upstream 824541 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1952770 24563400 ~ 24568643 (+)

Expression


Co-expression Network