e2f8 (e2f8)


Basic Information

Item Value
gene id e2f8
gene name e2f8
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25188293 ~ 25199986 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909971.2
CCGCCAAGCGTCCTGGTTACCGGGCCGCGGCGATTTGAAATCAAAATAACTCCGATTTGCGCAACAATTCGTGCCTCAGCGCGTCATTACTCAGAGCAGTGTGTGCCAGCTCATTAACCCTGTGTCATTACACCCTGATCAGGGCTCTGCGATGCTTTCTCCCAGACTGTacaatgctgtaaagaaaagGTGGAAGATGAGCAGCACTTTACTGGATGGTCAGCAGTTGAAGCAGAAGCTTGAGATTAACCCAAACCCAAGCAGCTCAGGTGCAGCGCGTGAGAAGAAAAAAGTTGTGTTTGTGGAGCCACAAACACAGTTAACAACTTTAGGAAAACTTCAGGAAGCTCAGAAGGCCATGGGACCTTTATCCACACCTACGAAGGGCTCGGAGGCCCCGGGAGGGGAACCGTGGACACCGACGTCCAACCTGAAAATGTTGATCAGCGCTGCGAGTCCAGAAATACGCAaccgagagaaagagaagaacagCACTGAGGAACATGAGAACTCCTCTCAGGATACTGAACAAGGAGAAGAGTCAGAGAGGCTGCAGCTCAGCCGAAAAGAGAAAAGCCTCGGGTTGCTGTGTCACAAATTTTTGGCTCGATATCCAGATTATCCGAATCCAGCTCTAAACAATGACATTTGCCTTGATGATGTTGCTGTTGAACTGAATGTGGAACGGCGACGTATATATGACATCATGAACGTTCTGGAGAGCCTGAACATGGTCAGCCGTTTGGCTAAAAACCGCTACACATGGCATGGTCGTGCTCAGCTAGCACACACACTAGCACTGCTccaaagagagggagagaaacaccACTATAGCCAGCAGATCCAGCAGATACGGCAGAGACATGCAGAGGACATGctggagatggagggagaggagaaagagaacgAGGACGTCGATGGAGAAATCACACAGAAGGAGCCAGGATTTAGTGAAGCCACTGTCGATGCTAAAGGGGCTAGCCGTAAGGATAAGTCCCTGCGTGTGATGAGTCAGAAGTTCGTTATGCTGTTCCTGGTGTCGAGTCCACGTGTGGTGAGCCTGGAAATCGCAGCCAAGATCCTGATCGGAGAAGACCAGGTGGTGGACCAGGACAAGAGCAAGTTCAAGAcaAAGATTCGTCGTCTATATGACATCTCTAACGTCCTCAGTAGTCTTAAGCTTATTAAGAAAGTGCATGTGACGGAAGAACGAGGAAGAAAACCCGCATTTAAATGGACTGGACCAGAGAATCTGTCCTTACAAGGTTTGCAGGTTGAGGCTTCTTCTTGCCCTCGGCCCCTCGAGTCCCGCTCGTCTGTAGACAACTGCACCAAAAACCTTTTCTGCTCTCCCAGCACTAAACGAGGCTTCACACGACATCATTCACTCGTCAAATTGGCCAAAAGCATCCAGGATGATCGCAGGAAGATCAACTCTGCTCCATCAAGCCCCATTAAAATCACAAGTGATGCGGTTAATGGAAGTTTCTATTCAAGTAAAATGGATCACCTCGCTGAGATTTGTAAAATGCAGCTGGACCAGCAAGCTATGAATGCCCAGAAGCAGAGCGATCTGAAAGAGGCTGCTCACTTGCAGCAGAAAAACTCAATGTTGTCACCCATTCCCCCCGTGATGACATCAGGGGCAGAGGCTTGTCCTCGGACGGTGCAGTTATCGCTTGCGCCTCCTCCCTGCTGCTCCCTCGTTCCTGTGCTGCTTCCCCATGCTGTGTACGTCAGCCACACCCCTGTCCGTCCTCGCCATGTTGCCAGGCCTCTGCCCTCTAGCACTGCTGTGCGCTCCATGACCTTTGAAAGCCCCAGAGGAGCAAACACGAAGGCGTCACCAGCGTCTGTAACAGTGACAGGCCAGAGGGTGCACGGTTTCGAGCCGGCAAGTCCTGCTCTGAAACGGACGTGCTTAGAAAGTTTAGAAAGAAGTCCAGCTAAGATTAAACGGCCTGAGATGAACTCAAAGAGCTTGTCCCCTAAGCTGTGTGAGATCCTGCAGGCTCGTCTGAAAGATCGTAGAGGAGCCCTGAGTTCCAGCCGTGCCTCAGCGAGAGCTCTGCACCTCGAGCCTGAATTTAACAAAACACCCCATAATAATCCTGATACTGTGGAGCACAACATGGAGCTGCAGCACTTCCTGGAGACAGAGGAGAGGGAAGAGAAAATACAGAGCCAGGTTACACCCACTCTGCAGGATTCGGctggacacacaaacacagagactcTGATCCCCACAGGTTATTTGATTCCAATTTCCCAACAGCCTCTGCTTAGCTTTAAAGAGACTTCGACCTCCAGTGGAGAGACAAATAAAACGCCAACATACATCTATCGCACACCAACTGCagGTTCGATAGCCCCTTCACCTCAGGAGTTCACCCCATCCCCTCTACCTGTCCATCGCCCCACCCACCGGGTCAGCCCCAACCCTTCCATCCTCAACTTCACCCTGCAGAACCTTGCTCTGATCCACAACACACCCAacaccacacatacagtacCAGCACCGGAGCAGCCGAGCCCCATACCCTGCACACACGCGCATGCTCACACACCGCTCCAAACACACGGCATGATCTTCATCAAGCCCGTCTCACCTCTCACACTCATCAGCCTGCAGCAGCCGGCCCTGACCACGCCCAAAAGTGGCTCCGCCCCCCAGCAGTGCTTTTTCCACACACCAGTCTCCACCGTGGTCACGCCCACTGCCAGTAAGAGCCTGTACATCCCTCAGAGGAAGCTGGACGTGAGCTCAGAGGAACACTGAGATCATCCACTAATGACCACTAACAACTTGTGAACTGTGTACATGACTGTTTAATTATCTGAATGTTTTGTAGCTTTGGCTTTACCTTTATGACTTACTGGTCCTGATTTTTCACTTGAACAGTCTTGGAAAAACAGAgccatgtgtgtgcatgtgtgtgtgtgcatgtgcgtccaaataaactgataaacttGACCTTAACATTGAGGTGCTAGCATTCTCTGGTTAGCTTTGTAAAAATACATAGTGCTGTATCTGAAATGTATAAAGAATAATTGTGAGTTtgatttaacaaataaatgtgAGCCTTCTGAGCCATATGGGAAA
>XM_026909972.2
gtgtgtgtgtgagagtgtgtgagtgtgggggGCGGGAGAAAGCGCGCTGTGTTCAGTCTGCTGGCGGGAGGTTTGATTGCATTAACACTTTCTGTCCTGGATTAGCACAGCCTTTTGGTCTGAGCTACTGAACGGTATGCGACTGGGGAAAGTTTTCTTTAATGCtagttagttttattttatttttcatgccTGCGTGTTCCTCAGACTGGGTTTCCAGTGCTGACAGCAGTTGCTTGTTTTAATTACCGCTTTAttactagttagctagcttgctaacagtCTCGGGCTAACAGCTAAAGAGTTTTCTCTGTAAACGAAGCGGGATTTGCTCTTTCCATGGAGCCGTGAGCCACTTTTCAGACGAAGTCAGACGGCATTATCTCCCGAGACGGGTGGAAGATGAGCAGCACTTTACTGGATGGTCAGCAGTTGAAGCAGAAGCTTGAGATTAACCCAAACCCAAGCAGCTCAGGTGCAGCGCGTGAGAAGAAAAAAGTTGTGTTTGTGGAGCCACAAACACAGTTAACAACTTTAGGAAAACTTCAGGAAGCTCAGAAGGCCATGGGACCTTTATCCACACCTACGAAGGGCTCGGAGGCCCCGGGAGGGGAACCGTGGACACCGACGTCCAACCTGAAAATGTTGATCAGCGCTGCGAGTCCAGAAATACGCAaccgagagaaagagaagaacagCACTGAGGAACATGAGAACTCCTCTCAGGATACTGAACAAGGAGAAGAGTCAGAGAGGCTGCAGCTCAGCCGAAAAGAGAAAAGCCTCGGGTTGCTGTGTCACAAATTTTTGGCTCGATATCCAGATTATCCGAATCCAGCTCTAAACAATGACATTTGCCTTGATGATGTTGCTGTTGAACTGAATGTGGAACGGCGACGTATATATGACATCATGAACGTTCTGGAGAGCCTGAACATGGTCAGCCGTTTGGCTAAAAACCGCTACACATGGCATGGTCGTGCTCAGCTAGCACACACACTAGCACTGCTccaaagagagggagagaaacaccACTATAGCCAGCAGATCCAGCAGATACGGCAGAGACATGCAGAGGACATGctggagatggagggagaggagaaagagaacgAGGACGTCGATGGAGAAATCACACAGAAGGAGCCAGGATTTAGTGAAGCCACTGTCGATGCTAAAGGGGCTAGCCGTAAGGATAAGTCCCTGCGTGTGATGAGTCAGAAGTTCGTTATGCTGTTCCTGGTGTCGAGTCCACGTGTGGTGAGCCTGGAAATCGCAGCCAAGATCCTGATCGGAGAAGACCAGGTGGTGGACCAGGACAAGAGCAAGTTCAAGAcaAAGATTCGTCGTCTATATGACATCTCTAACGTCCTCAGTAGTCTTAAGCTTATTAAGAAAGTGCATGTGACGGAAGAACGAGGAAGAAAACCCGCATTTAAATGGACTGGACCAGAGAATCTGTCCTTACAAGGTTTGCAGGTTGAGGCTTCTTCTTGCCCTCGGCCCCTCGAGTCCCGCTCGTCTGTAGACAACTGCACCAAAAACCTTTTCTGCTCTCCCAGCACTAAACGAGGCTTCACACGACATCATTCACTCGTCAAATTGGCCAAAAGCATCCAGGATGATCGCAGGAAGATCAACTCTGCTCCATCAAGCCCCATTAAAATCACAAGTGATGCGGTTAATGGAAGTTTCTATTCAAGTAAAATGGATCACCTCGCTGAGATTTGTAAAATGCAGCTGGACCAGCAAGCTATGAATGCCCAGAAGCAGAGCGATCTGAAAGAGGCTGCTCACTTGCAGCAGAAAAACTCAATGTTGTCACCCATTCCCCCCGTGATGACATCAGGGGCAGAGGCTTGTCCTCGGACGGTGCAGTTATCGCTTGCGCCTCCTCCCTGCTGCTCCCTCGTTCCTGTGCTGCTTCCCCATGCTGTGTACGTCAGCCACACCCCTGTCCGTCCTCGCCATGTTGCCAGGCCTCTGCCCTCTAGCACTGCTGTGCGCTCCATGACCTTTGAAAGCCCCAGAGGAGCAAACACGAAGGCGTCACCAGCGTCTGTAACAGTGACAGGCCAGAGGGTGCACGGTTTCGAGCCGGCAAGTCCTGCTCTGAAACGGACGTGCTTAGAAAGTTTAGAAAGAAGTCCAGCTAAGATTAAACGGCCTGAGATGAACTCAAAGAGCTTGTCCCCTAAGCTGTGTGAGATCCTGCAGGCTCGTCTGAAAGATCGTAGAGGAGCCCTGAGTTCCAGCCGTGCCTCAGCGAGAGCTCTGCACCTCGAGCCTGAATTTAACAAAACACCCCATAATAATCCTGATACTGTGGAGCACAACATGGAGCTGCAGCACTTCCTGGAGACAGAGGAGAGGGAAGAGAAAATACAGAGCCAGGTTACACCCACTCTGCAGGATTCGGctggacacacaaacacagagactcTGATCCCCACAGGTTATTTGATTCCAATTTCCCAACAGCCTCTGCTTAGCTTTAAAGAGACTTCGACCTCCAGTGGAGAGACAAATAAAACGCCAACATACATCTATCGCACACCAACTGCagGTTCGATAGCCCCTTCACCTCAGGAGTTCACCCCATCCCCTCTACCTGTCCATCGCCCCACCCACCGGGTCAGCCCCAACCCTTCCATCCTCAACTTCACCCTGCAGAACCTTGCTCTGATCCACAACACACCCAacaccacacatacagtacCAGCACCGGAGCAGCCGAGCCCCATACCCTGCACACACGCGCATGCTCACACACCGCTCCAAACACACGGCATGATCTTCATCAAGCCCGTCTCACCTCTCACACTCATCAGCCTGCAGCAGCCGGCCCTGACCACGCCCAAAAGTGGCTCCGCCCCCCAGCAGTGCTTTTTCCACACACCAGTCTCCACCGTGGTCACGCCCACTGCCAGTAAGAGCCTGTACATCCCTCAGAGGAAGCTGGACGTGAGCTCAGAGGAACACTGAGATCATCCACTAATGACCACTAACAACTTGTGAACTGTGTACATGACTGTTTAATTATCTGAATGTTTTGTAGCTTTGGCTTTACCTTTATGACTTACTGGTCCTGATTTTTCACTTGAACAGTCTTGGAAAAACAGAgccatgtgtgtgcatgtgtgtgtgtgcatgtgcgtccaaataaactgataaacttGACCTTAACATTGAGGTGCTAGCATTCTCTGGTTAGCTTTGTAAAAATACATAGTGCTGTATCTGAAATGTATAAAGAATAATTGTGAGTTtgatttaacaaataaatgtgAGCCTTCTGAGCCATATGGGAAA

Function

symbol description
e2f8 Enables DNA binding activity and DNA-binding transcription factor activity. Involved in positive regulation of transcription by RNA polymerase II and sprouting angiogenesis. Acts upstream of or within lymphangiogenesis; motor neuron axon guidance; and negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including axis; caudal vein plexus; eye; liver; and proliferative region. Orthologous to human E2F8 (E2F transcription factor 8).

NR:

description
PREDICTED: transcription factor E2F8

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0048523 negative regulation of cellular process biological_process
GO:0001890 placenta development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09391 E2F7_8; transcription factor E2F7/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909971.2 False 3106 mRNA 0.50 14 25189477 25199986
XM_026909972.2 True 3312 mRNA 0.50 14 25188293 25199986

Neighbor

gene id symbol gene type direction distance location
immp1l immp1l,LOC107719794,LOC107594745 coding upstream 17481 25158405 ~ 25170812 (+)
zdhhc13 LOC108270773 coding upstream 204088 24950414 ~ 24984205 (+)
rcn1 rcn1,LOC107690795,LOC107719795,LOC107728085,LOC107662342 coding upstream 257550 24915616 ~ 24930743 (+)
vps13c vps13c coding upstream 275170 24809829 ~ 24913123 (+)
LOC113547059 egln1 coding upstream 422976 24743111 ~ 24765317 (+)
nav2a nav2,LOC106561918 coding downstream 4133 25204119 ~ 25326654 (+)
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding downstream 157997 25357983 ~ 25383000 (+)
prmt3 prmt3 coding downstream 187326 25387312 ~ 25448761 (+)
slc6a5 slc6a5 coding downstream 255722 25455708 ~ 25484810 (+)
trnar-acg_9 NA coding downstream 306437 25506423 ~ 25506495 (+)
G187612 NA non-coding upstream 12204 25175808 ~ 25176089 (+)
G187563 NA non-coding upstream 66178 25121247 ~ 25122115 (+)
G187527 NA non-coding upstream 200200 24987879 ~ 24988093 (+)
G187340 NA non-coding upstream 256247 24931645 ~ 24932046 (+)
G187276 NA non-coding upstream 381728 24803771 ~ 24806565 (+)
G187668 NA non-coding downstream 72290 25272276 ~ 25272599 (+)
G187675 NA non-coding downstream 90527 25290513 ~ 25290974 (+)
G187782 NA non-coding downstream 145305 25345291 ~ 25345491 (+)
G187895 lrp4 non-coding downstream 547124 25747110 ~ 25750632 (+)
G187961 NA non-coding downstream 718565 25918551 ~ 25919605 (+)
oaz1a oaz1 other upstream 619650 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 977530 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2807273 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 3229334 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 3923238 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 331759 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 985876 26185862 ~ 26212115 (+)
G188164 NA other downstream 1006956 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 1060544 26260530 ~ 26352035 (+)

Expression


Co-expression Network