tollip (tollip)


Basic Information

Item Value
gene id tollip
gene name tollip
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25924180 ~ 25930589 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909993.2
caattgtgtggaGAAGAGCCTCATATGGacgtgatggtcaggggtgcacatacttttggccatatagtatgtCTGGTTGTTTACGGTGTTTGTATGTGATgatcatttgtatatttttgtataagCCGGCAGGGGGCAGTGTGCGCAGGTCTGTGGCTGTAAACATTACACAGGAAGAAGATCATcaccaaaacagtgaaaacgCGCATCCTATTGCTTTGATTTGATTAACTTCGCTCAACATGGCAACCACGATCAGCACTCAGCGAGGCCAGGTGTACATCGGAGAGCTTCCGACGGACTTCCTGAGGATCACTCCGACagtccagcagcagcaggtaCAGATGGACGCTCACACGGCGCAGCAGCTGCAGTATGGAGGCAGCCTCAACACCATGGGCCGCATCAGCATCACAGTAGTGCAGGCGAAGTTGGCTAAGAACTACGGCATGACGCGCATGGACCCATACTGCAGGATTCGGCTGGGCTACACCGTGTACGAAACGCCTACAGCACATAACGGAGCGAAAAACCCACGCTGGAACAAAGTGATTCAGTGCCCGTTGCCTCCTGCAGTCGACTCCTTCTACCTGGAAATCTTTGATGAGAGGGCATTTTCCATGGATGATCGCATCGCCTGGACTCACGTGACTATCCCGGAGAGTCTGAGGGAAGGCAGCATAGTTGACGAGTGGTACAGCCTGAGTGGAAGACAAGGAGACGATAAAGAAGGAATGATTAACCTTGTCATGTCCTACTCTTCAGTGCCAGCAGGGATGATCATGCCGTCTCAGCCTGTGGTCCTGATGCCCACCGTTTACCAGCAGGGTGTCGGCTATGTGCCCATTACAGgCATGCCAGGTGTCTATAACCAGGGCGTGATGCCCATGGGGATGCCTggccaaaacagacctatctaggagggccaaatcaactcACAGAAGGAATGCACAGTGAGTGAGGAGGACCTGCAGGCCCTGAGCGACATGTTCCCTAACCTGGATAAGGAAGTGAtccaagagccaccttcatgtgTGATGggctcaagatgcaaaccactggcaGCAGGGAACAATTTTTGCTGCCATTAA

Function

symbol description
tollip Predicted to enable ubiquitin binding activity and ubiquitin conjugating enzyme binding activity. Acts upstream of or within negative regulation of Wnt signaling pathway. Predicted to be active in cytoplasm. Orthologous to human TOLLIP (toll interacting protein).

NR:

description
toll-interacting protein

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0006954 inflammatory response biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05402 TOLLIP; toll-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909993.2 True 1091 mRNA 0.52 8 25924180 25930589

Neighbor

gene id symbol gene type direction distance location
trnar-acg_9 NA coding upstream 417685 25506423 ~ 25506495 (+)
slc6a5 slc6a5 coding upstream 439370 25455708 ~ 25484810 (+)
prmt3 prmt3 coding upstream 475419 25387312 ~ 25448761 (+)
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding upstream 541180 25357983 ~ 25383000 (+)
nav2a nav2,LOC106561918 coding upstream 597526 25204119 ~ 25326654 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding downstream 108797 26039386 ~ 26062656 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding downstream 153068 26083657 ~ 26095138 (+)
helz2a helz2 coding downstream 168935 26099524 ~ 26138619 (+)
LOC113524556 sdhaf2,LOC107685224 coding downstream 293228 26223817 ~ 26227916 (+)
LOC117598406 sdhaf2,LOC107685224 coding downstream 310483 26241072 ~ 26244720 (+)
G187961 NA non-coding upstream 4575 25918551 ~ 25919605 (+)
G187895 lrp4 non-coding upstream 173548 25747110 ~ 25750632 (+)
G187782 NA non-coding upstream 578689 25345291 ~ 25345491 (+)
G187675 NA non-coding upstream 633206 25290513 ~ 25290974 (+)
G187668 NA non-coding upstream 651581 25272276 ~ 25272599 (+)
G187970 NA non-coding downstream 11303 25941892 ~ 25949972 (+)
G188127 LOC108271167 non-coding downstream 58209 25988798 ~ 25993403 (+)
G188168 NA non-coding downstream 179034 26109623 ~ 26109848 (+)
G188179 LOC108270676,LOC108439640 non-coding downstream 222940 26153529 ~ 26166792 (+)
G188184 NA non-coding downstream 230725 26161314 ~ 26164756 (+)
LOC113523924 nell1 other upstream 227308 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1355537 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1713417 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 3543160 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 3965221 21958888 ~ 21958959 (+)
polr2l polr2l other downstream 255273 26185862 ~ 26212115 (+)
G188164 NA other downstream 276353 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 329941 26260530 ~ 26352035 (+)

Expression


Co-expression Network