htatip2 (htatip2,LOC107557281,LOC107662344,LOC107579432)


Basic Information

Item Value
gene id htatip2
gene name htatip2,LOC107557281,LOC107662344,LOC107579432
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25357983 ~ 25383000 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910002.2
catgcgcacaatCAGGAGCTGAAACGCGGAAGTGGGCGAGTCGGTTCTACGGTTGTGTTTCTATGTGAAACCTGTTATGAAGATTTTAGAGAGCGGTTTTAGTTCAGTGTTCACTGTTTTAGCAGTTTTAGTCGCTATATTTGCAGCGGTTTTACACTACATGGAGAATTCAACGGAATGTGTGGAGTATAAAGGGATGGATGTGGCTGCACTAGAGGAAAAATTCAGACAAAAGaataaaagttgttttattCTTGGTGCGTCTGGAGAGACAGGAAAAGTTCTGCTAAAGGAAATTGTGCAGCGCAATATTTTCACCAAAGTTACTCTGATTGGGCGACGACAGCTGAGCTTTGAGGATAAAGCTTATGACAATGTGgTGCAAGAAGTGGTGGATTTTGAGAAGCTGGATGAATATGCCCAAGCATTTCAGGGTCATGACGTTGGATACTGCTGTCTCGGAACAACCAAAGCGAAAGCTGGAACTgaggGATTTATACGTGTCGATCATGACTACGTACTGAAATCAGCAGAACTAGCCAAAGCCGGTGGATGTACACACTTCCACCTGGAATCATCTAAAGGAGCTGACAAAACCAGCAGTTTCCTTTATCTAAAAACCAAGGGCCAAGTTGAAGCAAACATAGAGGAGCTGGGCTTTGAGCGATACTCCATCTACAGACCTGCAGTGCTCTTGGTGAACAGAGAGGAGAGCAGACCAGCCGAATGGATGGCACGCAAATTTCTTGGAGCTTTTTCCACTGTGTTCCCCACGGCGATGTCCATCCCCGTCACCGCTGTGGCTCGAGCCATGGTGAGCAACACACTCATcgtgggagagagaaaaaccGAGATCCTTGAAAACAAAGCCATTTATAACCTCGGCAAGATCGGGGAAAAACAATAAGCTGTGGATTGTTCAAGTCTCATGTATCAAGTACAattgtttctttaattttctaCTCCATAAAGGGATGTTTGGTGATTTGGTGATATCCTGTTCAGGGA
>XM_026910003.2
ATTGTGTTTAATGAACACTGCATGctgaacatttttaataaatcactCATGAACACTATGGTGAGCgtgtttttacattatataGAACTTATAAAATGCATACATGTTAAACATTGTAATGTAGTCCTGCTAAATACcctttaaataaatgtacaggCTCAATACAACACTGAGAGTAACAGAGAACATCTTTAGTAAATTGTGctagtgacagtgtgtgtgctgaacaCTTGTATGCTGAATAAGAGAAATATTAGGTGTGACTTTGCTGAAAGATGAGCAGGCAGGATGGATGTGGCTGCACTAGAGGAAAAATTCAGACAAAAGaataaaagttgttttattCTTGGTGCGTCTGGAGAGACAGGAAAAGTTCTGCTAAAGGAAATTGTGCAGCGCAATATTTTCACCAAAGTTACTCTGATTGGGCGACGACAGCTGAGCTTTGAGGATAAAGCTTATGACAATGTGgTGCAAGAAGTGGTGGATTTTGAGAAGCTGGATGAATATGCCCAAGCATTTCAGGGTCATGACGTTGGATACTGCTGTCTCGGAACAACCAAAGCGAAAGCTGGAACTgaggGATTTATACGTGTCGATCATGACTACGTACTGAAATCAGCAGAACTAGCCAAAGCCGGTGGATGTACACACTTCCACCTGGAATCATCTAAAGGAGCTGACAAAACCAGCAGTTTCCTTTATCTAAAAACCAAGGGCCAAGTTGAAGCAAACATAGAGGAGCTGGGCTTTGAGCGATACTCCATCTACAGACCTGCAGTGCTCTTGGTGAACAGAGAGGAGAGCAGACCAGCCGAATGGATGGCACGCAAATTTCTTGGAGCTTTTTCCACTGTGTTCCCCACGGCGATGTCCATCCCCGTCACCGCTGTGGCTCGAGCCATGGTGAGCAACACACTCATcgtgggagagagaaaaaccGAGATCCTTGAAAACAAAGCCATTTATAACCTCGGCAAGATCGGGGAAAAACAATAAGCTGTGGATTGTTCAAGTCTCATGTATCAAGTACAattgtttctttaattttctaCTCCATAAAGGGATGTTTGGTGATTTGGTGATATCCTGTTCAGGGA
>XM_034308697.1
AGAGGAGTTCATAATGAACAGATGGATGTGGCTGCACTAGAGGAAAAATTCAGACAAAAGaataaaagttgttttattCTTGGTGCGTCTGGAGAGACAGGAAAAGTTCTGCTAAAGGAAATTGTGCAGCGCAATATTTTCACCAAAGTTACTCTGATTGGGCGACGACAGCTGAGCTTTGAGGATAAAGCTTATGACAATGTGgTGCAAGAAGTGGTGGATTTTGAGAAGCTGGATGAATATGCCCAAGCATTTCAGGGTCATGACGTTGGATACTGCTGTCTCGGAACAACCAAAGCGAAAGCTGGAACTgaggGATTTATACGTGTCGATCATGACTACGTACTGAAATCAGCAGAACTAGCCAAAGCCGGTGGATGTACACACTTCCACCTGGAATCATCTAAAGGAGCTGACAAAACCAGCAGTTTCCTTTATCTAAAAACCAAGGGCCAAGTTGAAGCAAACATAGAGGAGCTGGGCTTTGAGCGATACTCCATCTACAGACCTGCAGTGCTCTTGGTGAACAGAGAGGAGAGCAGACCAGCCGAATGGATGGCACGCAAATTTCTTGGAGCTTTTTCCACTGTGTTCCCCACGGCGATGTCCATCCCCGTCACCGCTGTGGCTCGAGCCATGGTGAGCAACACACTCATcgtgggagagagaaaaaccGAGATCCTTGAAAACAAAGCCATTTATAACCTCGGCAAGATCGGGGAAAAACAATAAGCTGTGGATTGTTCAAGTCTCATGTATCAAGTACAattgtttctttaattttctaCTCCATAAAGGGATGTTTGGTGATTTGGTGATATCCTGTTCAGGGA
>XM_034308698.1
TGTATAAATAATACCCAAGGATGGATGTGGCTGCACTAGAGGAAAAATTCAGACAAAAGaataaaagttgttttattCTTGGTGCGTCTGGAGAGACAGGAAAAGTTCTGCTAAAGGAAATTGTGCAGCGCAATATTTTCACCAAAGTTACTCTGATTGGGCGACGACAGCTGAGCTTTGAGGATAAAGCTTATGACAATGTGgTGCAAGAAGTGGTGGATTTTGAGAAGCTGGATGAATATGCCCAAGCATTTCAGGGTCATGACGTTGGATACTGCTGTCTCGGAACAACCAAAGCGAAAGCTGGAACTgaggGATTTATACGTGTCGATCATGACTACGTACTGAAATCAGCAGAACTAGCCAAAGCCGGTGGATGTACACACTTCCACCTGGAATCATCTAAAGGAGCTGACAAAACCAGCAGTTTCCTTTATCTAAAAACCAAGGGCCAAGTTGAAGCAAACATAGAGGAGCTGGGCTTTGAGCGATACTCCATCTACAGACCTGCAGTGCTCTTGGTGAACAGAGAGGAGAGCAGACCAGCCGAATGGATGGCACGCAAATTTCTTGGAGCTTTTTCCACTGTGTTCCCCACGGCGATGTCCATCCCCGTCACCGCTGTGGCTCGAGCCATGGTGAGCAACACACTCATcgtgggagagagaaaaaccGAGATCCTTGAAAACAAAGCCATTTATAACCTCGGCAAGATCGGGGAAAAACAATAAGCTGTGGATTGTTCAAGTCTCATGTATCAAGTACAattgtttctttaattttctaCTCCATAAAGGGATGTTTGGTGATTTGGTGATATCCTGTTCAGGGA

Function

symbol description
htatip2 Predicted to be involved in import into nucleus. Predicted to be active in cytoplasm. Orthologous to human HTATIP2 (HIV-1 Tat interactive protein 2).

NR:

description
PREDICTED: oxidoreductase HTATIP2

GO: NA

KEGG:

id description
K17290 HTATIP2; oxidoreductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910002.2 False 1008 mRNA 0.45 6 25375560 25383000
XM_026910003.2 True 1100 mRNA 0.42 6 25375849 25383000
XM_034308697.1 False 833 mRNA 0.45 6 25357983 25383000
XM_034308698.1 False 832 mRNA 0.45 6 25375782 25383000

Neighbor

gene id symbol gene type direction distance location
nav2a nav2,LOC106561918 coding upstream 31329 25204119 ~ 25326654 (+)
e2f8 e2f8 coding upstream 157997 25188293 ~ 25199986 (+)
immp1l immp1l,LOC107719794,LOC107594745 coding upstream 187171 25158405 ~ 25170812 (+)
zdhhc13 LOC108270773 coding upstream 373778 24950414 ~ 24984205 (+)
rcn1 rcn1,LOC107690795,LOC107719795,LOC107728085,LOC107662342 coding upstream 427240 24915616 ~ 24930743 (+)
prmt3 prmt3 coding downstream 4312 25387312 ~ 25448761 (+)
slc6a5 slc6a5 coding downstream 72708 25455708 ~ 25484810 (+)
trnar-acg_9 NA coding downstream 123423 25506423 ~ 25506495 (+)
tollip tollip coding downstream 541180 25924180 ~ 25930589 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding downstream 656386 26039386 ~ 26062656 (+)
G187782 NA non-coding upstream 12492 25345291 ~ 25345491 (+)
G187675 NA non-coding upstream 67009 25290513 ~ 25290974 (+)
G187668 NA non-coding upstream 85384 25272276 ~ 25272599 (+)
G187612 NA non-coding upstream 181894 25175808 ~ 25176089 (+)
G187563 NA non-coding upstream 235868 25121247 ~ 25122115 (+)
G187895 lrp4 non-coding downstream 364110 25747110 ~ 25750632 (+)
G187961 NA non-coding downstream 535551 25918551 ~ 25919605 (+)
G187970 NA non-coding downstream 558892 25941892 ~ 25949972 (+)
G188127 LOC108271167 non-coding downstream 605798 25988798 ~ 25993403 (+)
G188168 NA non-coding downstream 726623 26109623 ~ 26109848 (+)
oaz1a oaz1 other upstream 789340 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1147220 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2976963 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 3399024 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 4092928 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 148745 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 802862 26185862 ~ 26212115 (+)
G188164 NA other downstream 823942 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 877530 26260530 ~ 26352035 (+)

Expression


Co-expression Network