immp1l (immp1l,LOC107719794,LOC107594745)


Basic Information

Item Value
gene id immp1l
gene name immp1l,LOC107719794,LOC107594745
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25158405 ~ 25170812 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910017.2
GTTTCCGGTTCATTCACCACAATCATAACTGCGGTGTTTACACTCGGGGTCTGCAGGAGGTTTCAAAGATAAATGCCAGTGACATTCAGTGTTTTGCAGGGGTGTGTGATGTCACAGCGTTTGTTCAGCAAGGTGTTGGGTTTTATCGGCTACACTGTTCAGTATGGCTGCATCGCTCACTGCACATTTGAGTACATTGGAGAGTTTGTCATGTGTTCAGGACCGTCAATGGAGCCAACCATCACCGATCACGACGTTGTTTTTTCAGAACGCCTCAGCAGACATTTGTATCGCATAGAGAAagGGGACATTGTGATTGCTAAGAGCCCATTTGACCCAAACATGAACATCTGTAAACGAGTTATTGGACTGGAAGGAGATAAAGTGTGCACCAGTGGACCATCGGATACATTTAAGACACACACTTTTgtacCAAGAGGTCATGTGTGGCTGGAAGGTGATAATTTGCAGAACTCTACAGACTCACGATGTTACGGCCCTGTTCCCTATGGACTCATACAAGGACGAGTGTGTTTAAAGCTGTGGCCTCCACACAGTGTCGGTGTGCTAAACGAGAGTCCTAATGCCGGCCGCATTTTGCGCACTGAATAACAGCAACTGCAATGATTTCTCCTTCacatgcttttaaaataaacttgtgTTCAGGAC
>XM_026910019.2
CATGCCTGATAGAGGAAAACAGATGACGTATAATGGCGCCGCCAATCAGAGCATTACGTTCGCGAGTTCAAAGGTCATAGCAGACggacatgaataaaatattccagCTATAACTAAAAAGGTGTTTTGCAGGGGTGTGTGATGTCACAGCGTTTGTTCAGCAAGGTGTTGGGTTTTATCGGCTACACTGTTCAGTATGGCTGCATCGCTCACTGCACATTTGAGTACATTGGAGAGTTTGTCATGTGTTCAGGACCGTCAATGGAGCCAACCATCACCGATCACGACGTTGTTTTTTCAGAACGCCTCAGCAGACATTTGTATCGCATAGAGAAagGGGACATTGTGATTGCTAAGAGCCCATTTGACCCAAACATGAACATCTGTAAACGAGTTATTGGACTGGAAGGAGATAAAGTGTGCACCAGTGGACCATCGGATACATTTAAGACACACACTTTTgtacCAAGAGGTCATGTGTGGCTGGAAGGTGATAATTTGCAGAACTCTACAGACTCACGATGTTACGGCCCTGTTCCCTATGGACTCATACAAGGACGAGTGTGTTTAAAGCTGTGGCCTCCACACAGTGTCGGTGTGCTAAACGAGAGTCCTAATGCCGGCCGCATTTTGCGCACTGAATAACAGCAACTGCAATGATTTCTCCTTCacatgcttttaaaataaacttgtgTTCAGGAC
>XM_026910020.2
TAACTGCGGTGTTTACACTCGGGGTCTGCAGGAGGTTTCAAAGATAAATGCCAGTGACATTCAGTCTGTCGATTTTTGTTTACTATGATAAGAGTGTGTTTTGCAGGGGTGTGTGATGTCACAGCGTTTGTTCAGCAAGGTGTTGGGTTTTATCGGCTACACTGTTCAGTATGGCTGCATCGCTCACTGCACATTTGAGTACATTGGAGAGTTTGTCATGTGTTCAGGACCGTCAATGGAGCCAACCATCACCGATCACGACGTTGTTTTTTCAGAACGCCTCAGCAGACATTTGTATCGCATAGAGAAagGGGACATTGTGATTGCTAAGAGCCCATTTGACCCAAACATGAACATCTGTAAACGAGTTATTGGACTGGAAGGAGATAAAGTGTGCACCAGTGGACCATCGGATACATTTAAGACACACACTTTTgtacCAAGAGGTCATGTGTGGCTGGAAGGTGATAATTTGCAGAACTCTACAGACTCACGATGTTACGGCCCTGTTCCCTATGGACTCATACAAGGACGAGTGTGTTTAAAGCTGTGGCCTCCACACAGTGTCGGTGTGCTAAACGAGAGTCCTAATGCCGGCCGCATTTTGCGCACTGAATAACAGCAACTGCAATGATTTCTCCTTCacatgcttttaaaataaacttgtgTTCAGGAC
>XM_034308686.1
ttttaaaaataaagttttgactttattaaaaaaaaaaattaaagaacacTTTCGCATTCTTCTCAGTACGGTTCCTGTGTTTCCGGTTCATTCACCACAATCATAACTGCGGTGTTTACACTCGGGGTCTGCAGGAGGTTTCAAAGATAAATGCCAGTGACATTCAGTGTTTTGCAGGGGTGTGTGATGTCACAGCGTTTGTTCAGCAAGGTGTTGGGTTTTATCGGCTACACTGTTCAGTATGGCTGCATCGCTCACTGCACATTTGAGTACATTGGAGAGTTTGTCATGTGTTCAGGACCGTCAATGGAGCCAACCATCACCGATCACGACGTTGTTTTTTCAGAACGCCTCAGCAGACATTTGTATCGCATAGAGAAagGGGACATTGTGATTGCTAAGAGCCCATTTGACCCAAACATGAACATCTGTAAACGAGTTATTGGACTGGAAGGAGATAAAGTGTGCACCAGTGGACCATCGGATACATTTAAGACACACACTTTTAATCAATCACAGCATGGGTCCTCACATCAACGGAGgtacCAAGAGGTCATGTGTGGCTGGAAGGTGATAATTTGCAGAACTCTACAGACTCACGATGTTACGGCCCTGTTCCCTATGGACTCATACAAGGACGAGTGTGTTTAAAGGTATA

Function

symbol description
immp1l Predicted to enable serine-type endopeptidase activity and serine-type exopeptidase activity. Predicted to be involved in protein processing involved in protein targeting to mitochondrion. Predicted to act upstream of or within proteolysis. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial inner membrane peptidase complex. Orthologous to human IMMP1L (inner mitochondrial membrane peptidase subunit 1).

NR:

description
PREDICTED: mitochondrial inner membrane protease subunit 1

GO:

id name namespace
GO:0006627 protein processing involved in protein targeting to mitochondrion biological_process
GO:0006508 proteolysis biological_process
GO:0042720 mitochondrial inner membrane peptidase complex cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K09647 IMP1; mitochondrial inner membrane protease subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910017.2 False 669 mRNA 0.46 6 25158861 25170812
XM_026910019.2 True 702 mRNA 0.45 6 25158405 25170812
XM_026910020.2 False 676 mRNA 0.45 6 25158886 25170812
XM_034308686.1 False 658 mRNA 0.43 6 25158783 25168182

Neighbor

gene id symbol gene type direction distance location
zdhhc13 LOC108270773 coding upstream 174200 24950414 ~ 24984205 (+)
rcn1 rcn1,LOC107690795,LOC107719795,LOC107728085,LOC107662342 coding upstream 227662 24915616 ~ 24930743 (+)
vps13c vps13c coding upstream 245282 24809829 ~ 24913123 (+)
LOC113547059 egln1 coding upstream 393088 24743111 ~ 24765317 (+)
ankrd24 LOC108270748,LOC107586440 coding upstream 453497 24684609 ~ 24704908 (+)
e2f8 e2f8 coding downstream 17481 25188293 ~ 25199986 (+)
nav2a nav2,LOC106561918 coding downstream 33307 25204119 ~ 25326654 (+)
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding downstream 187171 25357983 ~ 25383000 (+)
prmt3 prmt3 coding downstream 216500 25387312 ~ 25448761 (+)
slc6a5 slc6a5 coding downstream 284896 25455708 ~ 25484810 (+)
G187563 NA non-coding upstream 36290 25121247 ~ 25122115 (+)
G187527 NA non-coding upstream 170312 24987879 ~ 24988093 (+)
G187340 NA non-coding upstream 226359 24931645 ~ 24932046 (+)
G187276 NA non-coding upstream 351840 24803771 ~ 24806565 (+)
G187316 katnb1 non-coding upstream 384219 24773765 ~ 24774186 (+)
G187612 NA non-coding downstream 4996 25175808 ~ 25176089 (+)
G187668 NA non-coding downstream 101464 25272276 ~ 25272599 (+)
G187675 NA non-coding downstream 119701 25290513 ~ 25290974 (+)
G187782 NA non-coding downstream 174479 25345291 ~ 25345491 (+)
G187895 lrp4 non-coding downstream 576298 25747110 ~ 25750632 (+)
oaz1a oaz1 other upstream 589762 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 947642 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2777385 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 3199446 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 3893350 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 360933 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 1015050 26185862 ~ 26212115 (+)
G188164 NA other downstream 1036130 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 1089718 26260530 ~ 26352035 (+)

Expression


Co-expression Network