prmt3 (prmt3)


Basic Information

Item Value
gene id prmt3
gene name prmt3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25387312 ~ 25448761 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910021.2
CTCACCCGGAAGAAGTCAGAAGAAGCCAGAATGGCGGAATACACAGATCTCGGTGGTGCAGGCGATGAGGTTCCTGAACTATCCGACAGTGAGGATGAAGACCAGTGGATGGAGGAAGAAGATGAACATGAGACTGAAGAGAGTGTGTTGTGCCTCTTCTGTGACAGGTGTCTCCATTCTGTGTCTGAAACTTTCCATCACTGCCAGGTAGATCACAGCATTAGCATAGCAGATTTGGTgaaaaaacacaGGCTTGATGATTATGGATACATAAAGATGATAAACTATATTAGAACAGTGAAGTGCAGTGTGGAGAGTTTGGCATCGTGTTCAGGCAGTGATGTGCCGTGGAGCGGAGATGAGTACATGAAGCCGGCTCTGCCTGATGACGCACTACTACAGATTGatGTGGAGGAGTTGGGTGGCGACGCAGCGTGTGACGACGTGTCCGTGTGGGTTCAGAGAGCACAGCAGGCAGAGGAGAATCTCAGCCGTGCCATGGAAGACCTGCATAAACTCAAAACATTTGCACAGGGCCTGGTGCTGAATTCGGACATGACACAGAAGTGTGTAGGGAGTGTAGCAGAGCTGCGAGAAGATGAGGACGAGGCCTATTTCAGTTCTTATGGGCATTACAGCATCCACGAAGAAATGCTTAAGGATAAAGTGCGCACTGAGAGCTACCGGGATTTTATGTACAGCAACCCAGATTTGTTCAAGGACAAAGTGGTGCTAGATGTGGGTTGTGGTACTGGAATCCTGTCAATGTTCGCTGCTCGTTCTGGGGCCAAGAAGGTCATTGGtgttgaccaatcagaaatcaTCTACCATGCCATGGACATCGTCAGAGCTAATCATCTCGAGGACACAATCACACTGATTAAAGGCCGGATAGAGGAAGTGGAGCTTCCGGTGGAGAAAGTGGACATCATTATTTCAGAATGGATGGGCTACTTCCTCCTTTTTGAGTCAATGCTGGATTCAGTGATCTTCGCCAGGGATCGATACCTCGCAGAGGGAGGTTCAGTTTATCCTGACCGATGTAGCATTAGCCTAGCAGCAGTGAGCGACGTGGAGAAACACCGTGGTcacattgcattctgggatgaCGTTTATGGCTTTAAGATGGCATGCATGAAGAAGGCAGTGATTCCTGAAGCTGTGGTCGAGGTTTTGAAACCTGAAACAGTCATCTCAGAGCCGACTGTTATTCAGACATTGGACTGCAATGCTGTCACTCTCTCTGAGCTGGACTTCACTGCTGATTTTACCCTGAAgataacagcaaacacatccTGCACCGCTGTGGTGGgctattttgatattttttttgacCGAGACTGCACAAACAAGGTGATGTTCTCCACATCTCCTCACTGCACTAAGACTCATTGGAAGCAGACAGTTTTCTTTCTGGAGAATCCTATTCCCGTCCAGTCAGGTGACGAACTGCCAGGGCGAATAACAGTCTGTAAAAACAGGAAGGACCCGCGAGCGTTAATTGTTACGCTAAACATTGCTGATTGGAAGCAGACATACTGTGTGCAGTAAACCTCAGAAACACTGATGGTTTTCATCATGGGGCCAAACTGCTTTTTGATCAGAATTGATGTAGAATCATTTTAGTCTGCAATAAAACTCTGGCAAAGAATTTGGA
>XM_026910022.2
CTCACCCGGAAGAAGTCAGAAGAAGCCAGAATGGCGGAATACACAGATCTCGGTGGTGCAGGCGATGAGGTTCCTGAACTATCCGACAGTGAGGATGAAGACCAGTGGATGGAGGAAGAAGATGAACATGAGACTGAAGAGAGTGTGTTGTGCCTCTTCTGTGACAGGTGTCTCCATTCTGTGTCTGAAACTTTCCATCACTGCCAGGTAGATCACAGCATTAGCATAGCAGATTTGGTgaaaaaacacaGGCTTGATGATTATGGATACATAAAGATGATAAACTATATTAGAACAGTGAAGTGCAGTGTGGAGAGTTTGGCATCGTGTTCAGGCAGTGATGTGCCGTGGAGCGGAGATGAGTACATGAAGCCGGCTCTGCCTGATGACGCACTACTACAGATTGatGTGGAGGAGTTGGGTGGCGACGCAGCGTGTGACGACGTGTCCGTGTGGGTTCAGAGAGCACAGCAGGCAGAGGAGAATCTCAGCCGTGCCATGGAAGACCTGCATAAACTCAAAACATTTGCACAGGGCCTGGTGCTGAATTCGGACATGACACAGAAGTGTGTAGGGAGTGTAGCAGAGCTGCGAGAAGATGAGGACGAGGCCTATTTCAGTTCTTATGGGCATTACAGCATCCACGAAGAAATGCTTAAGGATAAAGTGCGCACTGAGAGCTACCGGGATTTTATGTACAGCAACCCAGATTTGTTCAAGGACAAAGTGGTGCTAGATGTGGGTTGTGGTACTGGAATCCTGTCAATGTTCGCTGCTCGTTCTGGGGCCAAGAAGGTCATTGGtgttgaccaatcagaaatcaTCTACCATGCCATGGACATCGTCAGAGCTAATCATCTCGAGGACACAATCACACTGATTAAAGGCCGGATAGAGGAAGTGGAGCTTCCGGTGGAGAAAGTGGACATCATTATTTCAGAATGGATGGGCTACTTCCTCCTTTTTGAGTCAATGCTGGATTCAGTGATCTTCGCCAGGGATCGATACCTCGCAGAGGGAGGTTCAGTTTATCCTGACCGATGTAGCATTAGCCTAGCAGCAGTGAGCGACGTGGAGAAACACCGTGGTcacattgcattctgggatgaCGTTTATGGCTTTAAGATGGCATGCATGAAGAAGGCAGTGATTCCTGAAGCTGTGGTCGAGGTTTTGAAACCTGAAACAGTCATCTCAGAGCCGACTGTTATTCAGACATTGGACTGCAATGCTGTCACTCTCTCTGAGCTGGACTTCACTGCTGATTTTACCCTGAAgataacagcaaacacatccTGCACCGAAAAATGCCTCTCCACTCCCTCATGCCCAGCACATGTAAGGGAATGCTGGGTTGGTTGCCACACGCTTCAGTCTGTTAAATACCAGATAATAACCAAACTTGTATCTGGAGTTTCctacacaacacaaaatggaacattgttaaattattttattagcatCATGATACATTAGGTTTTAAACACAGATTGTGCAATAGACTctcattatactgtatgtcaaaCAAGGAATGACATTAACACTTAAAAAAGAACACAGCAGTCACTGTCAAGTTGTACCAAAGtgaagaatgta

Function

symbol description
prmt3 Predicted to enable S-adenosylmethionine-dependent methyltransferase activity. Predicted to act upstream of or within peptidyl-arginine methylation. Orthologous to human PRMT3 (protein arginine methyltransferase 3).

NR:

description
protein arginine N-methyltransferase 3 isoform X3

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function

KEGG:

id description
K11436 PRMT3; type I protein arginine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910021.2 True 1657 mRNA 0.47 16 25387312 25448761
XM_026910022.2 False 1596 mRNA 0.46 14 25387312 25430721

Neighbor

gene id symbol gene type direction distance location
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding upstream 4312 25357983 ~ 25383000 (+)
nav2a nav2,LOC106561918 coding upstream 60658 25204119 ~ 25326654 (+)
e2f8 e2f8 coding upstream 187326 25188293 ~ 25199986 (+)
immp1l immp1l,LOC107719794,LOC107594745 coding upstream 216500 25158405 ~ 25170812 (+)
zdhhc13 LOC108270773 coding upstream 403107 24950414 ~ 24984205 (+)
slc6a5 slc6a5 coding downstream 6947 25455708 ~ 25484810 (+)
trnar-acg_9 NA coding downstream 57662 25506423 ~ 25506495 (+)
tollip tollip coding downstream 475419 25924180 ~ 25930589 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding downstream 590625 26039386 ~ 26062656 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding downstream 634896 26083657 ~ 26095138 (+)
G187782 NA non-coding upstream 41821 25345291 ~ 25345491 (+)
G187675 NA non-coding upstream 96338 25290513 ~ 25290974 (+)
G187668 NA non-coding upstream 114713 25272276 ~ 25272599 (+)
G187612 NA non-coding upstream 211223 25175808 ~ 25176089 (+)
G187563 NA non-coding upstream 265197 25121247 ~ 25122115 (+)
G187895 lrp4 non-coding downstream 298349 25747110 ~ 25750632 (+)
G187961 NA non-coding downstream 469790 25918551 ~ 25919605 (+)
G187970 NA non-coding downstream 493131 25941892 ~ 25949972 (+)
G188127 LOC108271167 non-coding downstream 540037 25988798 ~ 25993403 (+)
G188168 NA non-coding downstream 660862 26109623 ~ 26109848 (+)
oaz1a oaz1 other upstream 818669 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1176549 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 3006292 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 3428353 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 4122257 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 82984 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 737101 26185862 ~ 26212115 (+)
G188164 NA other downstream 758181 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 811769 26260530 ~ 26352035 (+)

Expression


Co-expression Network