rplp2l (rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873)


Basic Information

Item Value
gene id rplp2l
gene name rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26514550 ~ 26517299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910145.2
TCTACCAATAGGCGTTTCAGCCTGATCACGTGACCATGGCTGCCGACGCTACATCCGGTTTCCGGGCCCGGTCCACTTCCTTTCCGCCTGCACGCGCTCTGTGGTGAACACGCGTTACCCCGTTCCTCTCCGTGAAGATGCGTTACGTAGCTGCCTACCTCCTGGCTGCCCTCGGGGGCAAAGAgaaccccagcagcagcgacaTCAAGAAGATCCTGGAGAGCGTCGGCATCGAGGCTGACGAGACCCGCATGGGGAAGGTCGTGTCTGAACTCAGTGGCAAATCAGTTGAGGAGGTGATTGCTCAAGGTTACAGTAAGTTGGCCAGCGTGCCAGCTGGTGGCGCTGTTGCGGTGGCGGCATCTGGTGCTCCCGCTGCTGGAGGAGCCGCAGCTCCTGCAGCTGCAGctgaggagaagaaggaggagaagaaagaggagtCTGAAGAATCCGATGACGACATGGGATTCGGACTGTTTGACTAAACCCTGTACTCGGGACCAAAATAAAAcgtttgtcaaaaaaaaaaaa

Function

symbol description
rplp2 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within cytoplasmic translational elongation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in female organism. Orthologous to human RPLP2 (ribosomal protein lateral stalk subunit P2).

NR:

description
PREDICTED: 60S acidic ribosomal protein P2-like

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02943 RP-LP2, RPLP2; large subunit ribosomal protein LP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910145.2 True 531 mRNA 0.56 5 26514550 26517299

Neighbor

gene id symbol gene type direction distance location
LOC117598404 LOC107716903 coding upstream 22777 26491117 ~ 26491773 (+)
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding upstream 85449 26421913 ~ 26429101 (+)
LOC117598406 sdhaf2,LOC107685224 coding upstream 269830 26241072 ~ 26244720 (+)
LOC113524556 sdhaf2,LOC107685224 coding upstream 286634 26223817 ~ 26227916 (+)
helz2a helz2 coding upstream 375931 26099524 ~ 26138619 (+)
LOC117598415 rplp2,LOC108260028,LOC103139322,LOC101168608 coding downstream 47002 26564301 ~ 26566306 (+)
LOC117598392 LOC108270747,LOC108273219,LOC108273545,LOC108261282,LOC108273546,LOC108274210,LOC108261633,LOC108263642,LOC108268260,LOC108273691 non-coding upstream 3143 26445979 ~ 26511407 (+)
LOC117598394 NA non-coding upstream 77831 26429135 ~ 26436719 (+)
LOC117598395 NA non-coding upstream 93051 26420374 ~ 26421499 (+)
LOC117598393 NA non-coding upstream 94177 26419606 ~ 26420373 (+)
G188202 NA non-coding upstream 291629 26218931 ~ 26222921 (+)
G188396 NA non-coding downstream 4114 26521413 ~ 26574817 (+)
LOC117598444 NA non-coding downstream 43492 26560791 ~ 26561738 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other upstream 162515 26260530 ~ 26352035 (+)
polr2l polr2l other upstream 302435 26185862 ~ 26212115 (+)
G188164 NA other upstream 304540 26206942 ~ 26210010 (+)
LOC113523924 nell1 other upstream 817678 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1945907 24563400 ~ 24568643 (+)

Expression


Co-expression Network