cdc6 (cdc6,LOC102777898,LOC104942167)


Basic Information

Item Value
gene id cdc6
gene name cdc6,LOC102777898,LOC104942167
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21200218 ~ 21206239 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912525.2
GCGAAAACGCGCCAGCTGATTGGTGAAGTGTTGCTCAGAGTGGAGAAGCGCGCCAGTTGTTTCTGTCAGCGGTGAGACGAGGAGCTTGTCTGGACGGTTTTTGTGActggaaacaaaaagaaacgTTTTATCCCGATATTAGCTACAGCCTGGTCTGGTGAAAATGCCCACCACTCGCTCTCAGAGACAGCCAACTCTCCAGTTCCCCAAGCGCAAGTCCTCCAGAGTCTCTTCCCAAGCCAAAAGTTCTTCATCTCAGCCCGACTCGGAGCATGTTCTGGACGCTCGAACCATCCCCCTGTCTCCCAGAAAGACAAACTTGGGTGTCAGAAACGTCCCACTTTCTCCCATGAAGGCAGTTGTGGACGTCCGAAACGTCCCTCTTTCTCCCAGAAAGACAAATGGTGCAGACATCAGGGCCATTCCTCTGTCCCCCCGACACCACATGCTCCAAAGTGTCCCTTCTTCTGAGAGACTTCCTCTGAGCCCCAGAAAGCGCACAGGCGACGAGAACGGATGCAACCTGCCGCCGTCTCTTCAGGGCTCTCCTCCCAAACAGAGCCGTCCCTCACTAGGCTCCCCTCGCAAGCTGTCCTTTAATGAGAACATTCCTGTCTTCGCGTCGCCTCCTCGGCCTACCTCAGCAGACTTTAAAATCCCTATTTCATCCTCGACTTGCCCTTCTCCCAAATGCTTGAAAGAGCCCACTAGAGCTGAATCTGATGCACTGGAGAAGGTGTCCGCTCCTGTTGGAAAAAAATCACAGTACCAGTGCGTGAAACAGGCTCTTCACACAGCTGTGCCTGAGCGACTGCTctcaagagagacagagcgaggcGTTATTGTTTCCTTCCTGGAGAAACACGTGGTGCCCGGCAAGCCGTCCAGCCTGTACATCTCTGGAGCTCCTGGAACAGGGAAGACGGCCTGCTTGAACTGCGTGCTTCAAGAACGCAAGGCTTTCCTAAAAGGAGTACAGACAGTGGTGATTAACTGCATGACACTGCGTAGCTCCCATTCAATCTTCCCTGTTCTAGCGGAAAAACTGGGAACGTCCAGAGGCCACAGCGATGGCAAGCTTGAGAAACTGCTGACCAGTTCAGGCCCCACTGTTCTGTTGGTACTGGATGAGATGGATCAGCTGGACAGCAAGGCCCAAGATGTTCTCTATACCATCTTTGAATGGCCTTATCTTCCTAACTCTCGGCTGTGTCTCATTGGTATCGCAAACGCTCTCGACCTGACGGACCGTATTTTGCCCAGACTGCAGGCTAAGCCTCACTGCAGACCACAGCTTCTTCACTTCCCACCCTACAGCCGCCAGGAGCTGGCAGCCATCGTCCAGGACCGGCTCACACAGGTCTCAGAAGAAGGTGTTCttgatgctgctgctgttcaGTTTTGTGCCAGAAAGGTGTCTGCAGTGTCAGGAGATGCCCGAAAAGCTCTAGACATCTGCAGGAGAGCTGTAGAGATGGTTGAGTCTAACAACAGATCCAAAATGTCTTCTGAATCGACAAACACCACTACAAATGCTAATACTAAAGcGGCACGTGTGAGTGTTCCTCAGGTGGCGCGGGTGCTGTCGGAGGTGTATGGAGACCGCATGGCCTCTAGTGGGGGGGAGGAAGGAGAAAGTTTCCCTCTGCAGCAGAAATTGCTGGTCTGCTGCCTGCTCCTTCTTACGCGCAATGGCAAGAGTCGAGAGATCCAGCTGGGCAAGCTGTGTGAGACCTACAGTAAACTGTGCCAGCAGAGGCAGGTCAGTGGCGTGGGCCAAGGCGAGTGTCTGTCACTATGCAGTTTACTAGAAAGCAGAGGCATCTTCTCTCTCAAGAAGGCCAAAGAAGCACGACTCACCAAGatcTCTCTGAAGATTGAGGAGAAGGATGTGGAGAATGCGCTGAAGGATCGTGCATTACTGGGCAGCATCTTGGCTGCAGGTCTGCCGTGATCTCCATCAGTACAGCCTCCTGCATCCACCTTGAGACCTTCACTTTCCacaatgatatttatttttgtaatgtgtttattttgcaaCTTTTCAAGCGGTGAACGTCTTGTCTTCAGCAGGACAGCTTCatgacaggcttttttttt

Function

symbol description
cdc6 Predicted to enable DNA replication origin binding activity. Acts upstream of or within mitotic cell cycle phase transition. Predicted to be active in nucleus. Is expressed in central nervous system and proliferative region. Used to study Meier-Gorlin syndrome. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 5. Orthologous to human CDC6 (cell division cycle 6).

NR:

description
cell division control protein 6 homolog isoform X1

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K02213 CDC6; cell division control protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912525.2 True 2100 mRNA 0.52 12 21200218 21206239

Neighbor

gene id symbol gene type direction distance location
si:ch211-69b7.6 NA coding upstream 13154 21174029 ~ 21187064 (+)
abcc10 abcc10 coding upstream 26874 21156418 ~ 21173344 (+)
sp2 sp2,LOC107680542,LOC107753850 coding upstream 46596 21143071 ~ 21153622 (+)
socs7 socs7 coding upstream 58371 21131479 ~ 21141847 (+)
mrpl45 mrpl45,LOC107753856,LOC107680544 coding upstream 85725 21108593 ~ 21114493 (+)
krt99 NA coding downstream 64220 21270459 ~ 21277952 (+)
krt15 LOC108270790 coding downstream 84195 21290434 ~ 21292917 (+)
krt94 LOC108270801,LOC108438672,LOC103031381,LOC102787562,LOC102307626 coding downstream 114852 21321091 ~ 21324269 (+)
c11h6orf120 c10h6orf120,LOC103038725,LOC105905813 coding downstream 133704 21339943 ~ 21344414 (+)
mrpl4 mrpl4,LOC107680457,LOC107753863,LOC107597183,LOC107680460 coding downstream 139978 21346217 ~ 21351331 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding upstream 139990 21059064 ~ 21060228 (+)
G185418 NA non-coding upstream 175658 21002828 ~ 21024560 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding upstream 232317 20964535 ~ 20967901 (+)
G185330 LOC101478692 non-coding upstream 303757 20890247 ~ 20896461 (+)
G185206 NA non-coding upstream 492191 20705994 ~ 20708027 (+)
LOC113528706 NA non-coding downstream 31065 21237304 ~ 21248130 (+)
G185500 NA non-coding downstream 184112 21390351 ~ 21390568 (+)
G185501 LOC108270736,LOC105903432 non-coding downstream 184605 21390844 ~ 21391810 (+)
G185502 NA non-coding downstream 189123 21395362 ~ 21404052 (+)
G185503 NA non-coding downstream 201240 21407479 ~ 21409792 (+)
G184979 NA other upstream 1049324 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1328755 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1354980 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 1365804 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 1499944 19695227 ~ 19700274 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 45906 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 752649 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1106203 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3001637 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 3357161 24563400 ~ 24568643 (+)

Expression


Co-expression Network