tbr1a (LOC108270775)


Basic Information

Item Value
gene id tbr1a
gene name LOC108270775
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21554701 ~ 21559002 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914564.2
ATGCACCTGCAGCACTGCACTCCGCCATCGGCCAGAAATGCGGCCAGCGACTTTCCTGACGAGTTGCTCGCCGAGCACCACCCCGCGCCGTCCTCCGGCGCCGCCCCAGGGAACCACCCGGCTCTAACAAAACTCCCCGCCGAGCTGACCAGCGAAGAAGACGAGAGGAGCGAGCTCGCGCCCGCGCGCGACACCGGCACTGGGTCCGACGCGCAGCGCGCTTTGGATGGGAGCCACGCGGAGAAGCGACACGTGCCTGAGCCGAGCCGAGCGCGCACCACCGCCGCCatctcctcctcgtcctccgcGACCATGTTCTCATACGCGGCGCAGCACGGACACACGCTGCCGCCTTTCTCCATAAGCAATCCGGGTCACTTCGTGGCGCATCACGCCGTCATTCCAAACGGGCCGTATGACGGAGTTCTGTCCGGTGCGCCTAGACAGAACTACACCAGCGCCAGTTACCCGTACGCGCAGGCGTACAGTCAGGCGTACCAGAGCGGCGCGTTGTACCCGCTCTCCCCGGCGCACGCGGGACTCATGGCCGCCAAAGGGCAAGTGTATCTCTGCAACCGCGCGCTCTGGCTCAAATTTCACCGACACCAGACCGAGATGATCATCACCAAGCAAGGGCGACGCATGTTTCCCTTCCTAAGCTTCAACATTTCTGGACTTGACCCGACGGctcattataatatttttgtggACGTTATTCTGGCGGATCCGAACCACTGGCGCTTCCAGGGAGGAAAGTGGGTCCCGTGCGGAAAAGCGGACACCAATGTAACAGgAAACAGAGTGTACATGCACCCGGACTCTCCAAACACAGGAGCGCACTGGATGCGTCAGGAGATTTCATTTGGTAAACTTAAGTTAACAAACAACAAAGGAGCTTCCAACAACAGTGGCCAGATGGTCGTCCTGCAGTCGCTGCATAAGTACCAGCCCCGAGTGCACTTGGTGGAGGTGAATGAAGACGGGACAGAAGACTCGAGCCGATCGGACCGTGTGCACACGTTCACCTTCCCGGAAACGCAGTTCATAGCAGTCACTGCATACCAGAACACGGATatcacCCAGCTGAAAATCGACCATAATCCATTCGCTAAAGGATTCCGGGATAATTATGACACGATCTACACGGCGTGTGACAGTGAGCGCCTGAGCCCGTCCTCTGCTGACTCCCAGCGCGCACAGCTGATGCCGGCCAGGTACACGGCGGCGAGCTCGCTCCTTCACGACCAGTTCGTCGGCCATTATTCGGGTCCCGGAGGGAGCGTGGAGCGCGCGCTCCCGTTCACTAACAGCCTGGTAGGCTCGGAGCAAGCCGAGGACAGATGGTTTAATAACAGATTAGATTTTCCCGCTTCGACTTACGACGCAGCTGATCTGACTGGCAGCCTGCCCTCCTTGCTGCCCTATCCTGCCGCTgcaggggtcaaaggtcagacgCTTTCCGCTACCCCGACTTCTGGGCGCGCGCTTAGTGCCTACTGCGCCGCGCAGGCGGGCTGGGAGTCGCGCGGTGCGGGGCTGCCGAGCTGGATCACGGACACCAGCTTTGAGCGCTCCTACCTGTCCGAAGACGGGAGCACGGAGAAGGACGCCACCGCACCGGAGGTGCCCGACGCGAGCAAAGACAAGGACGCACCGGATTCGGGCTGGACAGAAACTCCGTCTTCGGTGAAATCAGTGGATTCAGGCGACTCGGGGATTTTTGAGCAGGCTAAAAGGAAGAGGATGTCACCGCCGGTGCCTGAGGAGCACTCACCGCTCAAAACAGAGCTCCTGAGCGCACAGGACGGAGCCCGGAATATGAACTACTTCACTTTCTATTCTCAGagttaaacacacagcatgcgGGGTGGACCAGCTGCTCCACCAGACTTCTTTGTTTtgaccttatttatttatttacttatttattgattgattagGTCGGGGTGGTGGGTGTCAGAGAACATGATCCTGAGCAAGCACATTAGGCCATTTGACTTCACAACCCCTTCTGACTGAAGCCATAGTTTATACAAATCAAACCTGATGCTGTTTCTGTACATTTCATTAGGCCTAATGAATTTAGTGGGGTGGGTGCAGGGGGTCAGAGAGAATGATCCTGATCCTGGACAAACACATTACACCATTCGGAAAAGCTCATGAGGCTGTAGCCATGGTCTGAGAGCCAAacattcaaaaaa

Function

NR:

description
PREDICTED: T-box brain protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914564.2 True 2201 mRNA 0.57 6 21554701 21559002

Neighbor

gene id symbol gene type direction distance location
psmd14 psmd14,psde,LOC107563735 coding upstream 2434 21532681 ~ 21552267 (+)
lgsn lgsn coding upstream 164495 21383873 ~ 21390206 (+)
col9a1a LOC108438673,LOC108270765,LOC107753862,LOC107680514,LOC107597184 coding upstream 181330 21359474 ~ 21373371 (+)
mrpl4 mrpl4,LOC107680457,LOC107753863,LOC107597183,LOC107680460 coding upstream 203370 21346217 ~ 21351331 (+)
c11h6orf120 c10h6orf120,LOC103038725,LOC105905813 coding upstream 210287 21339943 ~ 21344414 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding downstream 2053 21561055 ~ 21605914 (+)
si:ch211-227n13.3 LOC108270813 coding downstream 52774 21611776 ~ 21615292 (+)
nxph2b LOC108270824 coding downstream 57187 21616189 ~ 21622277 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding downstream 197588 21756590 ~ 21770086 (+)
fam43a fam43a,LOC106573864 coding downstream 1573965 23132967 ~ 23135152 (+)
G185546 NA non-coding upstream 66174 21488324 ~ 21488527 (+)
G185533 NA non-coding upstream 87763 21466332 ~ 21466938 (+)
G185519 NA non-coding upstream 108221 21444384 ~ 21446480 (+)
G185503 NA non-coding upstream 144909 21407479 ~ 21409792 (+)
G185502 NA non-coding upstream 150649 21395362 ~ 21404052 (+)
G185751 NA non-coding downstream 1165 21560167 ~ 21560379 (+)
G185940 NA non-coding downstream 461846 22020848 ~ 22021059 (+)
G185997 NA non-coding downstream 822396 22381398 ~ 22381611 (+)
G186046 NA non-coding downstream 869856 22428858 ~ 22429104 (+)
G186060 NA non-coding downstream 996447 22555449 ~ 22899731 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 289646 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 344162 21189248 ~ 21210539 (+)
G184979 NA other upstream 1403807 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1683238 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1709463 19836145 ~ 19845238 (+)
trnap-agg_1 NA other downstream 399886 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 753440 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2648874 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 3004398 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 3972743 25531745 ~ 25696872 (+)

Expression


Co-expression Network