lgsn (lgsn)


Basic Information

Item Value
gene id lgsn
gene name lgsn
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21383873 ~ 21390206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914590.2
ACCATACAGCCGCGGCGGCAGTGTCGTGTCTGAATGAGCGGCTCGCGAGGACCAGGCAGCCTGCAGCAGCCGCGCCCTGAGAGCAGAGCGCGCGCGCGTCACGAGGAGAAAACCAgGAAACAGCCTTAATGGATTCAGACCAAATAGATGGAGGCAGTCTCAGCCATGGCAAAAAGAAGGGGGTAAGGGAAAGTGGGGAACAAGTAGCCTCTTCAGAATGGGACAGAAGAAGGTTTGATCTGCCCATAGTCCAGACTGATTTATCTGCTCCAAGCCCCACTGACAACTCCACTATAATTTCAATTGGCCCACACTGCTGGCCCACAGTCTCCACTGAATCACAGCCTGATGACTACACTTATACGGATGAATGGAATAGAGAAGGCCACCCAGACAACCTACCTCCAGAGGCAGGTGTTTCTAGTGTTTCTAAACAAACAATGGAGGAACTGAAAAGCCTATTGAGAGAGCGCTCCATACTAaatacaagagagagagatgaagaccAATTAGTTGGTCATCGCCACACTCCTGGACAGAGAATTGACTGTAAACCAGATGACATACCATCCAAGTCCTTCACAACCTTCAAGCCCACTCTAGGGAGTAGTAGAAGAGCAAGAGATAGTGCTTCATCTGACTGGGAATCTGGTGGGTCATTGAAGACTGGTGGGCATACAAACAGGCCCACCAGTTTTAAGTTACCCACTAGTGAAAGAACATACTGGGTCAACACTGGGATATCGCAGACAGATAACAATGAGAATCCACAAACAGAATACCATGGATCCCAAAACTTCATTACAGAGGTTGAACACATAAAGCAGCAGATCAGCCGTGAGAATATAGGCTTTGTTCGCTTTGAAGCCACTGATCTCCATGGTGTATCTAGATCTAAGACAGTCCCTGCTTCCTTATTTCAGGAAAAAGCGGTTTATGGTGTGCCTATGCCTAGAAGCTACCTGGAGCTGACACTGAGCCCCAAGGAAAATGAGGTTGATCATCCAATTGCTCCCAATTTCAACAGTGATATTCTTCTGATCCCTGATCTCTCCACCTTTCGAGCCCTTCCCTGGGCTGAGCAGACTGCTCGTATCATTTGTGATCCTTGTACAATCACAGGGATCCCTCTGCGCACTTCTCCTCGCCTGATTGCTAAGCTGATGCTTGCTCAGCTTCAAGCCATGGGATTCTCCATCAATTCTTCTTTCACATATGAATGCTGCATCTTTGGATTACCAGAACGGATAGGCCCCAAGGTTGTATTTTTCCCTGCCACTACTTTACTGAGTAATCATGACATGCCTTTCTTACAGCAACTGGTGAGAGGGATGTACCACATGGGCATCAGTGTGGATAGCTTTGCATCTGCCAGTGGTCCAGGACAGATGGAAATCTGCTTCAAGCCTAAATTTGGAATTGAAGCTGTTGACAGTGCCTTCACCTTTCGTACTGGAATTAAAGAAATGGCCAGGAAGTATGACTATTTTGCCACCTTCCTTACTGATGACACCATCTACAATTCTGGCTGCCTGTCCCACAGCCTATGGGATGCCAATGGCAGGAGAAATCTTTTCTATTCAGGCACTAGCGAGATATCCGAGATTGGCAAGAAATGGCTTGGAGGGCTTCTCCACCACTCACCAGCTCTAAGCTGCCTAATGGCACCAGGGATAGGCTGCCGCACTCAGCTTTCCAAAAGCAGTATTTCAAAGAGCACATTCTATGCCACTTGTGGCTGCAATGACAACAGTTGTGCTTTTAATGTTAAGGTTCACGGTGGGCGGGAGACCCACATTGAGAACAAGCTTGGCTCAGCAATGGCAAACCCTTACATAGTCTTGGCAGCTACCATTGCAGCCGGATTGGATGGTATCAAGCGTGACCTCTGTGCAGAACTTTACAAAGCTCCAGTGCAGCAAAAACAGTTTGCCATACCTGTTAAACTGGAGGATGCCTTAGTGGCCCTGGGAGAAGACAGTGTGATTTGTGGGGCACTGGGTGAGCCATTTGTGTATTATTTCATTGCCATGAAACGCCTAGAGATTGAGACACAGGAGACTGATACAGACAGGAACAAAAACCTGGAATACTTCATCTAGATATAATTTCAGAAGTCAGGTAGAATATAATGCAAAAATCACTTCTGAGGAACATAAAGGGATAGGGGTAATGGAGAGGTAGTTTTGTCTAGGTCTTACACCTTTTATGGGTCTGTGTCTGGGACTACCAAGACACTGGAAAGCGACCTTGTCATCTTCGAAATGTGCCATCGTTTCATTTGAACAACCCACAAAAACCTGCACATTCACATATTACtacttcatttttattaccTCATCCCACATTAGAAGAATGGACAAGCAAAT
>XM_034308764.1
tgaataaatgaataatatttgacGGCATTAAAGGCTCGAGGAACAAGTAACAATTCAGAAGGATCTACAGAGAAAAGGAAACAGCCTTAATGGATTCAGACCAAATAGATGGAGGCAGTCTCAGCCATGGCAAAAAGAAGGGGGTAAGGGAAAGTGGGGAACAAGTAGCCTCTTCAGAATGGGACAGAAGAAGGTTTGATCTGCCCATAGTCCAGACTGATTTATCTGCTCCAAGCCCCACTGACAACTCCACTATAATTTCAATTGGCCCACACTGCTGGCCCACAGTCTCCACTGAATCACAGCCTGATGACTACACTTATACGGATGAATGGAATAGAGAAGGCCACCCAGACAACCTACCTCCAGAGGCAGGTGTTTCTAGTGTTTCTAAACAAACAATGGAGGAACTGAAAAGCCTATTGAGAGAGCGCTCCATACTAaatacaagagagagagatgaagaccAATTAGTTGGTCATCGCCACACTCCTGGACAGAGAATTGACTGTAAACCAGATGACATACCATCCAAGTCCTTCACAACCTTCAAGCCCACTCTAGGGAGTAGTAGAAGAGCAAGAGATAGTGCTTCATCTGACTGGGAATCTGGTGGGTCATTGAAGACTGGTGGGCATACAAACAGGCCCACCAGTTTTAAGTTACCCACTAGTGAAAGAACATACTGGGTCAACACTGGGATATCGCAGACAGATAACAATGAGAATCCACAAACAGAATACCATGGATCCCAAAACTTCATTACAGAGGTTGAACACATAAAGCAGCAGATCAGCCGTGAGAATATAGGCTTTGTTCGCTTTGAAGCCACTGATCTCCATGGTGTATCTAGATCTAAGACAGTCCCTGCTTCCTTATTTCAGGAAAAAGCGGTTTATGGTGTGCCTATGCCTAGAAGCTACCTGGAGCTGACACTGAGCCCCAAGGAAAATGAGGTTGATCATCCAATTGCTCCCAATTTCAACAGTGATATTCTTCTGATCCCTGATCTCTCCACCTTTCGAGCCCTTCCCTGGGCTGAGCAGACTGCTCGTATCATTTGTGATCCTTGTACAATCACAGGGATCCCTCTGCGCACTTCTCCTCGCCTGATTGCTAAGCTGATGCTTGCTCAGCTTCAAGCCATGGGATTCTCCATCAATTCTTCTTTCACATATGAATGCTGCATCTTTGGATTACCAGAACGGATAGGCCCCAAGGTTGTATTTTTCCCTGCCACTACTTTACTGAGTAATCATGACATGCCTTTCTTACAGCAACTGGTGAGAGGGATGTACCACATGGGCATCAGTGTGGATAGCTTTGCATCTGCCAGTGGTCCAGGACAGATGGAAATCTGCTTCAAGCCTAAATTTGGAATTGAAGCTGTTGACAGTGCCTTCACCTTTCGTACTGGAATTAAAGAAATGGCCAGGAAGTATGACTATTTTGCCACCTTCCTTACTGATGACACCATCTACAATTCTGGCTGCCTGTCCCACAGCCTATGGGATGCCAATGGCAGGAGAAATCTTTTCTATTCAGGCACTAGCGAGATATCCGAGATTGGCAAGAAATGGCTTGGAGGGCTTCTCCACCACTCACCAGCTCTAAGCTGCCTAATGGCACCAGGGATAGGCTGCCGCACTCAGCTTTCCAAAAGCAGTATTTCAAAGAGCACATTCTATGCCACTTGTGGCTGCAATGACAACAGTTGTGCTTTTAATGTTAAGGTTCACGGTGGGCGGGAGACCCACATTGAGAACAAGCTTGGCTCAGCAATGGCAAACCCTTACATAGTCTTGGCAGCTACCATTGCAGCCGGATTGGATGGTATCAAGCGTGACCTCTGTGCAGAACTTTACAAAGCTCCAGTGCAGCAAAAACAGTTTGCCATACCTGTTAAACTGGAGGATGCCTTAGTGGCCCTGGGAGAAGACAGTGTGATTTGTGGGGCACTGGGTGAGCCATTTGTGTATTATTTCATTGCCATGAAACGCCTAGAGATTGAGACACAGGAGACTGATACAGACAGGAACAAAAACCTGGAATACTTCATCTAGATATAATTTCAGAAGTCAGGTAGAATATAATGCAAAAATCACTTCTGAGGAACATAAAGGGATAGGGGTAATGGAGAGGTAGTTTTGTCTAGGTCTTACACCTTTTATGGGTCTGTGTCTGGGACTACCAAGACACTGGAAAGCGACCTTGTCATCTTCGAAATGTGCCATCGTTTCATTTGAACAACCCACAAAAACCTGCACATTCACATATTACtacttcatttttattaccTCATCCCACATTAGAAGAATGGACAAGCAAAT
>XM_034308765.1
CACCATACAGCCGCGGCGGCAGTGTCGTGTCTGAATGAGCGGCTCGCGAGGACCAGGCAGCCTGCAGCAGCCGCGCCCTGAGAGCAGAGCGCGCGCGCGTCACGAGGAGAAAACCAgGCATTAAAGGCTCGAGGAACAAGTAACAATTCAGAAGGATCTACAGAGAAAAGGAAACAGCCTTAATGGATTCAGACCAAATAGATGGAGGCAGTCTCAGCCATGGCAAAAAGAAGGGGGTAAGGGAAAGTGGGGAACAAGTAGCCTCTTCAGAATGGGACAGAAGAAGGTTTGATCTGCCCATAGTCCAGACTGATTTATCTGCTCCAAGCCCCACTGACAACTCCACTATAATTTCAATTGGCCCACACTGCTGGCCCACAGTCTCCACTGAATCACAGCCTGATGACTACACTTATACGGATGAATGGAATAGAGAAGGCCACCCAGACAACCTACCTCCAGAGGCAGGTGTTTCTAGTGTTTCTAAACAAACAATGGAGGAACTGAAAAGCCTATTGAGAGAGCGCTCCATACTAaatacaagagagagagatgaagaccAATTAGTTGGTCATCGCCACACTCCTGGACAGAGAATTGACTGTAAACCAGATGACATACCATCCAAGTCCTTCACAACCTTCAAGCCCACTCTAGGGAGTAGTAGAAGAGCAAGAGATAGTGCTTCATCTGACTGGGAATCTGGTGGGTCATTGAAGACTGGTGGGCATACAAACAGGCCCACCAGTTTTAAGTTACCCACTAGTGAAAGAACATACTGGGTCAACACTGGGATATCGCAGACAGATAACAATGAGAATCCACAAACAGAATACCATGGATCCCAAAACTTCATTACAGAGGTTGAACACATAAAGCAGCAGATCAGCCGTGAGAATATAGGCTTTGTTCGCTTTGAAGCCACTGATCTCCATGGTGTATCTAGATCTAAGACAGTCCCTGCTTCCTTATTTCAGGAAAAAGCGGTTTATGGTGTGCCTATGCCTAGAAGCTACCTGGAGCTGACACTGAGCCCCAAGGAAAATGAGGTTGATCATCCAATTGCTCCCAATTTCAACAGTGATATTCTTCTGATCCCTGATCTCTCCACCTTTCGAGCCCTTCCCTGGGCTGAGCAGACTGCTCGTATCATTTGTGATCCTTGTACAATCACAGGGATCCCTCTGCGCACTTCTCCTCGCCTGATTGCTAAGCTGATGCTTGCTCAGCTTCAAGCCATGGGATTCTCCATCAATTCTTCTTTCACATATGAATGCTGCATCTTTGGATTACCAGAACGGATAGGCCCCAAGGTTGTATTTTTCCCTGCCACTACTTTACTGAGTAATCATGACATGCCTTTCTTACAGCAACTGGTGAGAGGGATGTACCACATGGGCATCAGTGTGGATAGCTTTGCATCTGCCAGTGGTCCAGGACAGATGGAAATCTGCTTCAAGCCTAAATTTGGAATTGAAGCTGTTGACAGTGCCTTCACCTTTCGTACTGGAATTAAAGAAATGGCCAGGAAGTATGACTATTTTGCCACCTTCCTTACTGATGACACCATCTACAATTCTGGCTGCCTGTCCCACAGCCTATGGGATGCCAATGGCAGGAGAAATCTTTTCTATTCAGGCACTAGCGAGATATCCGAGATTGGCAAGAAATGGCTTGGAGGGCTTCTCCACCACTCACCAGCTCTAAGCTGCCTAATGGCACCAGGGATAGGCTGCCGCACTCAGCTTTCCAAAAGCAGTATTTCAAAGAGCACATTCTATGCCACTTGTGGCTGCAATGACAACAGTTGTGCTTTTAATGTTAAGGTTCACGGTGGGCGGGAGACCCACATTGAGAACAAGCTTGGCTCAGCAATGGCAAACCCTTACATAGTCTTGGCAGCTACCATTGCAGCCGGATTGGATGGTATCAAGCGTGACCTCTGTGCAGAACTTTACAAAGCTCCAGTGCAGCAAAAACAGTTTGCCATACCTGTTAAACTGGAGGATGCCTTAGTGGCCCTGGGAGAAGACAGTGTGATTTGTGGGGCACTGGGTGAGCCATTTGTGTATTATTTCATTGCCATGAAACGCCTAGAGATTGAGACACAGGAGACTGATACAGACAGGAACAAAAACCTGGAATACTTCATCTAGATATAATTTCAGAAGTCAGGTAGAATATAATGCAAAAATCACTTCTGAGGAACATAAAGGGATAGGGGTAATGGAGAGGTAGTTTTGTCTAGGTCTTACACCTTTTATGGGTCTGTGTCTGGGACTACCAAGACACTGGAAAGCGACCTTGTCATCTTCGAAATGTGCCATCGTTTCATTTGAACAACCCACAAAAACCTGCACATTCACATATTACtacttcatttttattaccTCATCCCACATTAGAAGAATGGACAAGCAAAT

Function

symbol description
lgsn Predicted to enable glutamate-ammonia ligase activity. Acts upstream of or within cell differentiation and lens morphogenesis in camera-type eye. Located in actin filament. Is expressed in lens. Orthologous to human LGSN (lengsin, lens protein with glutamine synthetase domain).

NR:

description
lengsin

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0005884 actin filament cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914590.2 False 2369 mRNA 0.47 4 21383874 21390206
XM_034308764.1 False 2330 mRNA 0.45 5 21386972 21390206
XM_034308765.1 True 2423 mRNA 0.47 5 21383873 21390206

Neighbor

gene id symbol gene type direction distance location
col9a1a LOC108438673,LOC108270765,LOC107753862,LOC107680514,LOC107597184 coding upstream 10502 21359474 ~ 21373371 (+)
mrpl4 mrpl4,LOC107680457,LOC107753863,LOC107597183,LOC107680460 coding upstream 32542 21346217 ~ 21351331 (+)
c11h6orf120 c10h6orf120,LOC103038725,LOC105905813 coding upstream 39459 21339943 ~ 21344414 (+)
krt94 LOC108270801,LOC108438672,LOC103031381,LOC102787562,LOC102307626 coding upstream 59604 21321091 ~ 21324269 (+)
krt15 LOC108270790 coding upstream 90956 21290434 ~ 21292917 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 142475 21532681 ~ 21552267 (+)
tbr1a LOC108270775 coding downstream 164495 21554701 ~ 21559002 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding downstream 170849 21561055 ~ 21605914 (+)
si:ch211-227n13.3 LOC108270813 coding downstream 221570 21611776 ~ 21615292 (+)
nxph2b LOC108270824 coding downstream 225983 21616189 ~ 21622277 (+)
G185439 NA non-coding upstream 44159 21077175 ~ 21339714 (+)
LOC113528706 NA non-coding upstream 135743 21237304 ~ 21248130 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding upstream 323645 21059064 ~ 21060228 (+)
G185418 NA non-coding upstream 359313 21002828 ~ 21024560 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding upstream 415972 20964535 ~ 20967901 (+)
G185500 NA non-coding downstream 145 21390351 ~ 21390568 (+)
G185501 LOC108270736,LOC105903432 non-coding downstream 638 21390844 ~ 21391810 (+)
G185502 NA non-coding downstream 5156 21395362 ~ 21404052 (+)
G185503 NA non-coding downstream 17273 21407479 ~ 21409792 (+)
G185519 NA non-coding downstream 54178 21444384 ~ 21446480 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 118818 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 173334 21189248 ~ 21210539 (+)
G184979 NA other upstream 1232979 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1512410 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1538635 19836145 ~ 19845238 (+)
trnap-agg_1 NA other downstream 568682 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 922236 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2817670 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 3173194 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 4141539 25531745 ~ 25696872 (+)

Expression


Co-expression Network