txlng (txlng,LOC107723067,LOC107665847)


Basic Information

Item Value
gene id txlng
gene name txlng,LOC107723067,LOC107665847
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21043300 ~ 21050473 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915666.2
GACAGGAGCGCTTGTGTGGCGCTGAATAAAGTTGAACCTGTTGCAGTGGAGCTCCTTGGCGCTTTTATTTTTTCGTCACAACATGGCGACTTGTTCAGGCGCCAGGGTCGATTTAAACACCGAAAACCTTCAGTACGGAGCTAACATGATGGAGACCTCCGGTGTATGTGGAATGGAGGCAGCCACACGTGGCCTTGTGGAGGGTAGCAGTTCCCCTCCCACTAGTGTGACCCCTTCTCAAGATAACCTTGGGGAGTTTGGAGGACTGATTAACACCTGCTGCAACAAAGAGGTAAGAGGGGAGACACCTGGGAGAGAAGATTGCCGGATTGACCCCCTTGAAGGAGAACTGGACTCGAGTGGCGATCAGAACAAGGACCAAAATATGTTTGGAAAAGAAGTGCTGCTACTGATGCAAGCCCTTCACACTTTAGCCACTCCCGAGGAAAAACTTGCTGCTCTTTGCAAAAAGTATGCTGACCTGCTAGAAGACAGCCGCAATATGCAGAAGCAAGTGAAGGTGTTGCAGAAGAAGCAGACGCAGGTCCTCAAAGAGAAGATCCATCTTCAGAGTGAACACAGCAAGGCTATTCTGGCTCGCAGCAAGCTGGAAAGCCTTTGCAGGGAACTACAACGGCACAACAAGACCCTGAAGGAGGAGAACGCCCAGCGGTTCAGAGAATACGAAGAGAGGCGTAAGGAGGCCACACTTCATTTTCAGATGACTCTAAGTGAGATCGAAACACAGATGGAGCAGCACAACACCCACAACACCAAGCTGAGGCAGGAGAACATGGAGCTGGCTGAGAAACTCAAGAAGCTCATTGAGCAGTATGAGCTGCGGGAGGAGCACATTGACAAGGTGTTCAAGCACAAGGAGCTTCAGCAGCAGCTGGTTGATGCAAATCTTCAACGGACGGCTGAGCTGATGAGAGAGGTGGAAGAgaagcagcagagagagagagaacttCTTCTGAAAGATGCAACAGAATCAAGACATAAATGTGAGCTGATGAAGGAACAGGAGCTTCAGTTGAAGCAGCAGCTTACTCTTTACATGGACAAATTTGAAGAGTTTCAGACGACCCTTGCTAAGAGTAATGAAGTGTTCACCTCCTTCAGACAGGAGATGGAGAAGATGACCAAGAAAATCAAGAAGTTAGAGAAGGAGACCACTCTTTGGAGGACCAAATGGGAGACTAACAACCAGACCTTACTGCAGATGGCAGAGGAGAAAACTGTGCGGGACAAACAGTACAAGGCTCTCCAAGGGAAACTGGAGCGTCTGGAGAAGCTGTGCAGAGCCCTGCAGAGGGAACGCAACGATCTGAGCCAGAAACTAGGAGCCCTCCAGGGCCCAGCAAAGGATCCTGAAGAGGAGGGGACGGGACCCCCAGACCCCCAGCCAGAGGAGGCTTTCAGCCCACCTGCGAATGTAGGGATGGATGGAGAGGTAGAGGGAGAAATGGAATGTTTGGCCCCGGAGACAGAGAGGCTGGCGCTGCAACCACAGATTGAGGAGACAACCAGAGAGCATCTTAATGACGACTGAGCCAGGCCCGTTGAGGGacgatttttttttg
>XM_026915674.2
TTCTGAATGATTAATATAGTGGTAAATTGAACAGCTTGGcttgtgtgtatacagtatttctCTAATGTTGTCGGGGAAACCCCGAGCTGAGTAGACTAGGTGTCTGCTTATCTAATGGAAGTGCCAGAGGTTGCTCACACCATGGGTATTAGATGTTTACGAAGGAAGTGGCTAAGCTAGCTGGGCTAGCCAGTCAAACAAGCCGAATAGACATGGACTCGCGTTTATTTTTGCGCTTTTAATTAAACCGTACCTTATATAATGATAGCGTATTACTCGTGAGAAAACAATATGTGCGAGGTTTTTTAGAGTAAACCAGAATTCTTGTATTAGCTAGCTACGCAGCTGggtaacgttagctagctagctaactagctgggGGTCCTGATTTGTTTCCCTCAAAGTTTAGTAGCTAGCAGCTTAGCTCGCCTGTTTGGACCTGCACTCTGCTCTCAGCAGTGTTTTGAGGTACAAAGTACGGAGCTAACATGATGGAGACCTCCGGTGTATGTGGAATGGAGGCAGCCACACGTGGCCTTGTGGAGGGTAGCAGTTCCCCTCCCACTAGTGTGACCCCTTCTCAAGATAACCTTGGGGAGTTTGGAGGACTGATTAACACCTGCTGCAACAAAGAGGTAAGAGGGGAGACACCTGGGAGAGAAGATTGCCGGATTGACCCCCTTGAAGGAGAACTGGACTCGAGTGGCGATCAGAACAAGGACCAAAATATGTTTGGAAAAGAAGTGCTGCTACTGATGCAAGCCCTTCACACTTTAGCCACTCCCGAGGAAAAACTTGCTGCTCTTTGCAAAAAGTATGCTGACCTGCTAGAAGACAGCCGCAATATGCAGAAGCAAGTGAAGGTGTTGCAGAAGAAGCAGACGCAGGTCCTCAAAGAGAAGATCCATCTTCAGAGTGAACACAGCAAGGCTATTCTGGCTCGCAGCAAGCTGGAAAGCCTTTGCAGGGAACTACAACGGCACAACAAGACCCTGAAGGAGGAGAACGCCCAGCGGTTCAGAGAATACGAAGAGAGGCGTAAGGAGGCCACACTTCATTTTCAGATGACTCTAAGTGAGATCGAAACACAGATGGAGCAGCACAACACCCACAACACCAAGCTGAGGCAGGAGAACATGGAGCTGGCTGAGAAACTCAAGAAGCTCATTGAGCAGTATGAGCTGCGGGAGGAGCACATTGACAAGGTGTTCAAGCACAAGGAGCTTCAGCAGCAGCTGGTTGATGCAAATCTTCAACGGACGGCTGAGCTGATGAGAGAGGTGGAAGAgaagcagcagagagagagagaacttCTTCTGAAAGATGCAACAGAATCAAGACATAAATGTGAGCTGATGAAGGAACAGGAGCTTCAGTTGAAGCAGCAGCTTACTCTTTACATGGACAAATTTGAAGAGTTTCAGACGACCCTTGCTAAGAGTAATGAAGTGTTCACCTCCTTCAGACAGGAGATGGAGAAGATGACCAAGAAAATCAAGAAGTTAGAGAAGGAGACCACTCTTTGGAGGACCAAATGGGAGACTAACAACCAGACCTTACTGCAGATGGCAGAGGAGAAAACTGTGCGGGACAAACAGTACAAGGCTCTCCAAGGGAAACTGGAGCGTCTGGAGAAGCTGTGCAGAGCCCTGCAGAGGGAACGCAACGATCTGAGCCAGAAACTAGGAGCCCTCCAGGGCCCAGCAAAGGATCCTGAAGAGGAGGGGACGGGACCCCCAGACCCCCAGCCAGAGGAGGCTTTCAGCCCACCTGCGAATGTAGGGATGGATGGAGAGGTAGAGGGAGAAATGGAATGTTTGGCCCCGGAGACAGAGAGGCTGGCGCTGCAACCACAGATTGAGGAGACAACCAGAGAGCATCTTAATGACGACTGAGCCAGGCCCGTTGAGGGacgatttttttttg
>XM_034308444.1
ATTTTTTGATATTGTTAATGTTTTACGCGAACACTGTGGGTTTTATCACGAGGCAGAGTTTGTTGCTcgtgtatctgtatctgtatctgatgaACGGGTCATAACCGGTACATTAACCGTCCAAATGACCAGCCAACCACAATAATATAGAAAACAACATCTAGAGCAGTGTGTAACCGGTGGAACTGTTGATGGAGTGGTGTTATTCGGCCATTTTTAAAGCTTTCTGTCTGTGGTCAGTGTGCAGTTGTcagtcagcagcagcagtacagtacagtgagtCACAAGGCGCACGTGCACACAGCAGGAAATTAGCAGGTCCTGTTGGTCTGAGTGAAACACAGCGAAGTTCTCATTATTGTCAGGGGTTGATTTGATTAttagtcttatttatttatttatgtggtGCACGTGTTCCGTGTGGTGGCTCCTGGTGTTACTGTACAGCACGTGGTTCTTCTCCTCCACCTGTAACCCGTTCAGCACGTTGTTCAAAGGCCTCACATGCAGCAGATACTCAAGTAATAACAATCACCAGGTCTGTCAGTAGTGTAACTGTAACCCCTGCTGAGGGAAATTAGCTTCCCAATGCTCGCCTGTATGCGATATGGCATCAACAACCTTCCTAAACATGAAGTACAGCGCATACATTTTTTcgtccttttttgttttcttttcttctatGAGAAACGCTGAACCTTAGCCTAAACTAAGATAGTACGGAGCTAACATGATGGAGACCTCCGGTGTATGTGGAATGGAGGCAGCCACACGTGGCCTTGTGGAGGGTAGCAGTTCCCCTCCCACTAGTGTGACCCCTTCTCAAGATAACCTTGGGGAGTTTGGAGGACTGATTAACACCTGCTGCAACAAAGAGGTAAGAGGGGAGACACCTGGGAGAGAAGATTGCCGGATTGACCCCCTTGAAGGAGAACTGGACTCGAGTGGCGATCAGAACAAGGACCAAAATATGTTTGGAAAAGAAGTGCTGCTACTGATGCAAGCCCTTCACACTTTAGCCACTCCCGAGGAAAAACTTGCTGCTCTTTGCAAAAAGTATGCTGACCTGCTAGAAGACAGCCGCAATATGCAGAAGCAAGTGAAGGTGTTGCAGAAGAAGCAGACGCAGGTCCTCAAAGAGAAGATCCATCTTCAGAGTGAACACAGCAAGGCTATTCTGGCTCGCAGCAAGCTGGAAAGCCTTTGCAGGGAACTACAACGGCACAACAAGACCCTGAAGGAGGAGAACGCCCAGCGGTTCAGAGAATACGAAGAGAGGCGTAAGGAGGCCACACTTCATTTTCAGATGACTCTAAGTGAGATCGAAACACAGATGGAGCAGCACAACACCCACAACACCAAGCTGAGGCAGGAGAACATGGAGCTGGCTGAGAAACTCAAGAAGCTCATTGAGCAGTATGAGCTGCGGGAGGAGCACATTGACAAGGTGTTCAAGCACAAGGAGCTTCAGCAGCAGCTGGTTGATGCAAATCTTCAACGGACGGCTGAGCTGATGAGAGAGGTGGAAGAgaagcagcagagagagagagaacttCTTCTGAAAGATGCAACAGAATCAAGACATAAATGTGAGCTGATGAAGGAACAGGAGCTTCAGTTGAAGCAGCAGCTTACTCTTTACATGGACAAATTTGAAGAGTTTCAGACGACCCTTGCTAAGAGTAATGAAGTGTTCACCTCCTTCAGACAGGAGATGGAGAAGATGACCAAGAAAATCAAGAAGTTAGAGAAGGAGACCACTCTTTGGAGGACCAAATGGGAGACTAACAACCAGACCTTACTGCAGATGGCAGAGGAGAAAACTGTGCGGGACAAACAGTACAAGGCTCTCCAAGGGAAACTGGAGCGTCTGGAGAAGCTGTGCAGAGCCCTGCAGAGGGAACGCAACGATCTGAGCCAGAAACTAGGAGCCCTCCAGGGCCCAGCAAAGGATCCTGAAGAGGAGGGGACGGGACCCCCAGACCCCCAGCCAGAGGAGGCTTTCAGCCCACCTGCGAATGTAGGGATGGATGGAGAGGTAGAGGGAGAAATGGAATGTTTGGCCCCGGAGACAGAGAGGCTGGCGCTGCAACCACAGATTGAGGAGACAACCAGAGAGCATCTTAATGACGACTGAGCCAGGCCCGTTGAGGGacgatttttttttg

Function

symbol description
txlng Predicted to enable syntaxin binding activity. Predicted to be involved in regulation of cell cycle. Orthologous to human TXLNG (taxilin gamma).

NR:

description
PREDICTED: gamma-taxilin-like isoform X2

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915666.2 False 1583 mRNA 0.51 9 21043300 21050473
XM_026915674.2 False 1926 mRNA 0.49 9 21043461 21050473
XM_034308444.1 True 2168 mRNA 0.48 9 21044005 21050473

Neighbor

gene id symbol gene type direction distance location
hcn5 LOC108270784,LOC103027332,LOC107658208,LOC107712254,LOC107724451,LOC107668864,LOC107569239,LOC107597416 coding upstream 6726 21029394 ~ 21036574 (+)
chrna4b chrna4,LOC105906770,LOC103467111,LOC106941279 coding upstream 53879 20968735 ~ 20989421 (+)
elovl1b LOC108270818,LOC108438650,LOC107656106,LOC107753833,LOC107665848,LOC107562086,LOC107723066 coding upstream 95509 20932742 ~ 20947791 (+)
LOC113530200 LOC108270822,LOC108438687 coding upstream 155956 20881535 ~ 20887344 (+)
mast3b mast3 coding upstream 203711 20806331 ~ 20839589 (+)
zrsr2 zrsr2,LOC107729896,LOC107602790,LOC107753840 coding downstream 12944 21063417 ~ 21070097 (+)
npepps npepps,LOC106587691,LOC107718863,LOC107674532 coding downstream 36444 21086917 ~ 21105876 (+)
mrpl45 mrpl45,LOC107753856,LOC107680544 coding downstream 58120 21108593 ~ 21114493 (+)
socs7 socs7 coding downstream 81006 21131479 ~ 21141847 (+)
sp2 sp2,LOC107680542,LOC107753850 coding downstream 92598 21143071 ~ 21153622 (+)
G185418 NA non-coding upstream 18740 21002828 ~ 21024560 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding upstream 75399 20964535 ~ 20967901 (+)
G185330 LOC101478692 non-coding upstream 146839 20890247 ~ 20896461 (+)
G185206 NA non-coding upstream 335273 20705994 ~ 20708027 (+)
G185182 NA non-coding upstream 475008 20568076 ~ 20568292 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding downstream 8591 21059064 ~ 21060228 (+)
G185439 NA non-coding downstream 26702 21077175 ~ 21339714 (+)
LOC113528706 NA non-coding downstream 186831 21237304 ~ 21248130 (+)
G185500 NA non-coding downstream 339878 21390351 ~ 21390568 (+)
G185501 LOC108270736,LOC105903432 non-coding downstream 340371 21390844 ~ 21391810 (+)
G184979 NA other upstream 892406 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1171837 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1198062 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 1208886 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 1343026 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 138775 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 201672 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 908415 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1261969 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3157403 24207876 ~ 24210763 (+)

Expression


Co-expression Network