dazap1 (dazap1,LOC107685225)


Basic Information

Item Value
gene id dazap1
gene name dazap1,LOC107685225
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19676216 ~ 19691780 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916844.2
GCCCCGTGGCTTGGCGTCAGCGTTGCGCAGGTTGGGTTTGAACCGAAAGCGGAGTGACCTTCCCGGGGTAGGAGCAGAGAGGAGGCAGCTGTAGGAGACTGAGGCAGCTGACTAATGTCCGCACTCCAGTCCACAACTCTCGCTACAGAGATGAACAACCTACCTGGAGATGAAATTGGGAAGCTGTTTGTGGGTGGATTAGACTGGAGTACTACTCAAGAGACTTTACGAAATTATTTCTCCCAATATGGAGAGGTTGTGGACTGCGTCATCATGAAGGACAAAAGCACAAATCAGTCCAGGGGCTTTGGCTTTGTGAAGTTTAAAGATCCAAACTGTGTTCGGACTGTACTGGACACTAAACCTCATAACCTTGACGGTAGAAATATTGACCCTAAGCCATGTACTCCAAGAGGAATGCAGCCAGAGAAGACAAGAGCAAAAGATGGCTGGaAAGGAGGTAAAAGTGACAGCAATAAATCCAAGAAGATATTTGTTGGTGGAATTCCACACAACTGCGGTGAACCTGAACTCAGGGACTATTTTAACAGATTCGGAGTGGTCACAGAGGTGGTAATGATCTATGatgcagagaaacagagaccCCGAGGTTTTGGATTTATTACTTTCGAGGCCGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTTGAAGTGAAGAAGGCTGAGCCTCGGGACAACAAAGCTCCTGGCCCTGGGCAGCTGGGAGCCAATCAGTGGGGACCCAGAGCCATCTTAAGTGCGGCCAATGGCTGGGCTGCACAGCCTGCTCAGAGCTGGCAGCAGAGCTATGGCCCTCAGGGTGTTTGGGTGTCCACAGGGCAGCCATTAGGGGGATACGGTCCTCCTTTGCCAGCAGGCCGAGGTGCTGCCCAACCTCCCTCGCCCTTTAATGCATTCCTAGTAACAGCACCCCCACCAGGAGGATTTGGGGCACCTCAGGGATATCCACAGCAGGGCTACAGCACACCTCCTCAATTTGGATATAGTTTTGGCACGCCACAAGGTGACCAGTTTGTACCGCAAGGAATGCCTCCACCTCCTACTACTCCTGGAGCTGGGCCTCTGGGTTTTGCCCCTGCTACTACCCCTACTCAGGATATGAGCAAAGCCCCACCAGCACAGCCTGACTTCTCTTATAGCCAGTACGGCTTGGGTAACTATCCTCAGGACCCCTCTGCCTACGGACCAACGCGTCCTTCTCACAGTTATGGTCAGGATGAGCAGGGATATAGTGCAGGTTATGGGCAGGATCTGAGTGGCTTTGGACATAGCTTTGCCGACCCTAGCCAGCAGACTGCCTCATATGGTGCCCCTTCAGCACAGCCTACGTCAGCGCCGCAGCCCACAGCGAGTACTTTTGGTCGTGGGCAAAACCACAACGTCCAGGGCTTCCATCCTTATCGGCGCTGACCATTCCCCCTCTGACTTCCTCAATGCAATACAAACCGTCAGGGAATCGATGTTCTGATCACAAATGCCACTGGATTGTGAGCTTGATGAACATTACAAACGTAACTGgagggtgtttgtgtgtatgtgtggttgtgtgagtgtgtgtgtaagttatGAACAGGGACTATACTCCTTTATGAGGAGGCCacatttgttgtgtgttttctagTAGGGCAGCGCTATTTAGCAATAGATTTTCTTGATTGGTGAAACATCAGCACAGAACCATGCCAGTCAGCGGAGTGACAGGGTCTCCCATTTCCTCAGCTTTAATTCTATTAgggcaaaaatattttattttcaattttgtggATTTTTGTTTACTATCTGAGCCtttgaccattttatttaaaaattatttgaaatagaACTTACAAACATGTATTATAAACCTGAActgtgcaattttttaaaagaattttgtACTATTAAATGTGcgcttttcttgtttttatttaaggaTGTAGTGGATTCCCTCAGGTGGCTGTTTTAGTGCACTTTGCACttatgcaaaaaagaaagaaattttatttgaaataaacgATTTAAAGATACATACAAA
>XM_026916854.2
CGTGGCTTGGCGTCAGCGTTGCGCAGGTTGGGTTTGAACCGAAAGCGGAGTGACCTTCCCGGGGTAGGAGCAGAGAGGAGGCAGCTGTAGGAGACTGAGGCAGCTGACTAATGTCCGCACTCCAGTCCACAACTCTCGCTACAGAGATGAACAACCTACCTGGAGATGAAATTGGGAAGCTGTTTGTGGGTGGATTAGACTGGAGTACTACTCAAGAGACTTTACGAAATTATTTCTCCCAATATGGAGAGGTTGTGGACTGCGTCATCATGAAGGACAAAAGCACAAATCAGTCCAGGGGCTTTGGCTTTGTGAAGTTTAAAGATCCAAACTGTGTTCGGACTGTACTGGACACTAAACCTCATAACCTTGACGGTAGAAATATTGACCCTAAGCCATGTACTCCAAGAGGAATGCAGCCAGAGAAGACAAGAGCAAAAGATGGCTGGaAAGGAGGTAAAAGTGACAGCAATAAATCCAAGAAGATATTTGTTGGTGGAATTCCACACAACTGCGGTGAACCTGAACTCAGGGACTATTTTAACAGATTCGGAGTGGTCACAGAGGTGGTAATGATCTATGatgcagagaaacagagaccCCGAGGTTTTGGATTTATTACTTTCGAGGCCGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTTGAAGTGAAGAAGGCTGAGCCTCGGGACAACAAAGCTCCTGGCCCTGGGCAGCTGGGAGCCAATCAGTGGGGACCCAGAGCCATCTTAAGTGCGGCCAATGGCTGGGCTGCACAGCCTGCTCAGAGCTGGCAGCAGAGCTATGGCCCTCAGGGTGTTTGGGTGTCCACAGGGCAGCCATTAGGGGGATACGGTCCTCCTTTGCCAGCAGGCCGAGGTGCTGCCCAACCTCCCTCGCCCTTTAATGCATTCCTAGTAACAGCACCCCCACCAGGAGGATTTGGGGCACCTCAGGGATATCCACAGCAGGGCTACAGCACACCTCCTCAATTTGGATATAGTTTTGGCACGCCACAAGGTGACCAGTTTGTACCGCAAGGAATGCCTCCACCTCCTACTACTCCTGGAGCTGGGCCTCTGGGTTTTGCCCCTGCTACTACCCCTACTCAGGATATGAGCAAAGCCCCACCAGCACAGCCTGACTTCTCTTATAGCCAGTACGGTTATGGGCAGGATCTGAGTGGCTTTGGACATAGCTTTGCCGACCCTAGCCAGCAGACTGCCTCATATGGTGCCCCTTCAGCACAGCCTACGTCAGCGCCGCAGCCCACAGCGAGTACTTTTGGTCGTGGGCAAAACCACAACGTCCAGGGCTTCCATCCTTATCGGCGCTGACCATTCCCCCTCTGACTTCCTCAATGCAATACAAACCGTCAGGGAATCGATGTTCTGATCACAAATGCCACTGGATTGTGAGCTTGATGAACATTACAAACGTAACTGgagggtgtttgtgtgtatgtgtggttgtgtgagtgtgtgtgtaagttatGAACAGGGACTATACTCCTTTATGAGGAGGCCacatttgttgtgtgttttctagTAGGGCAGCGCTATTTAGCAATAGATTTTCTTGATTGGTGAAACATCAGCACAGAACCATGCCAGTCAGCGGAGTGACAGGGTCTCCCATTTCCTCAGCTTTAATTCTATTAgggcaaaaatattttattttcaattttgtggATTTTTGTTTACTATCTGAGCCtttgaccattttatttaaaaattatttgaaatagaACTTACAAACATGTATTATAAACCTGAActgtgcaattttttaaaagaattttgtACTATTAAATGTGcgcttttcttgtttttatttaaggaTGTAGTGGATTCCCTCAGGTGGCTGTTTTAGTGCACTTTGCACttatgcaaaaaagaaagaaattttatttgaaataaacgATTTAAAGATACATACAAA
>XM_026916861.2
ATTGACCCTAAGCCATGTACTCCAAGAGGAATGCAGCCAGAGAAGACAAGAGCAAAAGATGGCTGGaAAGGAGGTAAAAGTGACAGCAATAAATCCAAGAAGATATTTGTTGGTGGAATTCCACACAACTGCGGTGAACCTGAACTCAGGGACTATTTTAACAGATTCGGAGTGGTCACAGAGGTGGTAATGATCTATGatgcagagaaacagagaccCCGAGGTTGAAGTGAAGAAGGCTGAGCCTCGGGACAACAAAGCTCCTGGCCCTGGGCAGCTGGGAGCCAATCAGTGGGGACCCAGAGCCATCTTAAGTGCGGCCAATGGCTGGGCTGCACAGCCTGCTCAGAGCTGGCAGCAGAGCTATGGCCCTCAGGGTGTTTGGGTGTCCACAGGGCAGCCATTAGGGGGATACGGTCCTCCTTTGCCAGCAGGCCGAGGTGCTGCCCAACCTCCCTCGCCCTTTAATGCATTCCTAGTAACAGCACCCCCACCAGGAGGATTTGGGGCACCTCAGGGATATCCACAGCAGGGCTACAGCACACCTCCTCAATTTGGATATAGTTTTGGCACGCCACAAGGTGACCAGTTTGTACCGCAAGGAATGCCTCCACCTCCTACTACTCCTGGAGCTGGGCCTCTGGGTTTTGCCCCTGCTACTACCCCTACTCAGGATATGAGCAAAGCCCCACCAGCACAGCCTGACTTCTCTTATAGCCAGTACGGTTATGGGCAGGATCTGAGTGGCTTTGGACATAGCTTTGCCGACCCTAGCCAGCAGACTGCCTCATATGGTGCCCCTTCAGCACAGCCTACGTCAGCGCCGCAGCCCACAGCGAGTACTTTTGGTCGTGGGCAAAACCACAACGTCCAGGGCTTCCATCCTTATCGGCGCTGACCATTCCCCCTCTGACTTCCTCAATGCAATACAAACCGTCAGGGAATCGATGTTCTGATCACAAATGCCACTGGATTGTGAGCTTGATGAACATTACAAACGTAACTGgagggtgtttgtgtgtatgtgtggttgtgtgagtgtgtgtgtaagttatGAACAGGGACTATACTCCTTTATGAGGAGGCCacatttgttgtgtgttttctagTAGGGCAGCGCTATTTAGCAATAGATTTTCTTGATTGGTGAAACATCAGCACAGAACCATGCCAGTCAGCGGAGTGACAGGGTCTCCCATTTCCTCAGCTTTAATTCTATTAgggcaaaaatattttattttcaattttgtggATTTTTGTTTACTATCTGAGCCtttgaccattttatttaaaaattatttgaaatagaACTTACAAACATGTATTATAAACCTGAActgtgcaattttttaaaagaattttgtACTATTAAATGTGcgcttttcttgtttttatttaaggaTGTAGTGGATTCCCTCAGGTGGCTGTTTTAGTGCACTTTGCACttatgcaaaaaagaaagaaattttatttgaaataaacgATTTAAAGATACATACAAA

Function

symbol description
dazap1 Predicted to enable mRNA 3'-UTR binding activity; poly(G) binding activity; and poly(U) RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome and spermatogenesis. Is expressed in Purkinje cell. Orthologous to human DAZAP1 (DAZ associated protein 1).

NR:

description
PREDICTED: DAZ-associated protein 1 isoform X5

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14411 MSI; RNA-binding protein Musashi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916844.2 True 2062 mRNA 0.48 13 19676216 19691780
XM_026916854.2 False 1968 mRNA 0.47 12 19676220 19691780
XM_026916861.2 False 1502 mRNA 0.47 8 19680825 19691780

Neighbor

gene id symbol gene type direction distance location
ndufs7 ndufs7,LOC107680537,LOC107747413,LOC107597168,LOC107685366,LOC107553547 coding upstream 16796 19652838 ~ 19659420 (+)
ctdspl3 LOC108270532,LOC108435930,LOC107597167,LOC107757917,LOC107685268 coding upstream 27300 19642225 ~ 19648916 (+)
arid3a arid3a coding upstream 38025 19607447 ~ 19638191 (+)
LOC113531697 kiss1r coding upstream 70602 19599263 ~ 19605614 (+)
r3hdm4 r3hdm4,LOC107750993,LOC107592851,LOC107661084 coding upstream 78824 19587328 ~ 19597392 (+)
gtpbp3 gtpbp3 coding downstream 55102 19746882 ~ 19764051 (+)
ushbp1 ushbp1 coding downstream 89448 19781228 ~ 19796168 (+)
nr2f6b nr2f6,nr2f6b,LOC107680506,LOC107747262 coding downstream 107876 19799656 ~ 19808358 (+)
pole4 pole4,LOC106613703,LOC107685140 coding downstream 162905 19854685 ~ 19860286 (+)
ctns ctns coding downstream 212378 19904158 ~ 19911209 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding upstream 11725 19661092 ~ 19664491 (+)
G184614 NA non-coding upstream 73577 19548663 ~ 19602639 (+)
G184503 NA non-coding upstream 213373 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 214526 19459818 ~ 19461690 (+)
G184340 NA non-coding upstream 594731 19081252 ~ 19081485 (+)
G184718 NA non-coding downstream 11855 19703635 ~ 19704250 (+)
G184823 NA non-coding downstream 116933 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 229691 19921471 ~ 19947483 (+)
G184900 ndufa11 non-coding downstream 262814 19954594 ~ 19955040 (+)
G184988 NA non-coding downstream 573156 20264936 ~ 20265620 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other upstream 121247 19532081 ~ 19554969 (+)
LOC113546543 NA other upstream 128004 19526877 ~ 19548212 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 188432 19486328 ~ 19487784 (+)
adgrl4 adgrl4,LOC102783218 other upstream 405955 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 1267159 18166622 ~ 18409057 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 3447 19695227 ~ 19700274 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 136206 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 144365 19836145 ~ 19845238 (+)
ccl44 LOC108271213 other downstream 174018 19865798 ~ 19871463 (+)
G184979 NA other downstream 458191 20149971 ~ 20150894 (+)

Expression


Co-expression Network