ier5 (LOC100304758)


Basic Information

Item Value
gene id ier5
gene name LOC100304758
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14670881 ~ 14672730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917034.2
AAAAATAGAAACGGTCTCATTCCTCTCTAGGCTGTTGTTAGGTACGTGAGAGAATACGGGAGGTAATGTGATCTCAAATTATCACCCAAAATAACAACATTAAGGTTTTAGCGATGCGATCCTTCTATTGTTATATGTTTATCGTCGCTACGTTGTGAAAACCGATAGCAACAAGAATCCGAATCCGCCTAGTAGAGGAATAAGTACTCCTGAAACAGTTGATTTTGTTGTAACTGTCTATCGGGAGTTATTTTTGGCGCTGTGAAGGTTTTAGAAACTATTTTGAAGTGGATAATGTTCAGATAAGAATCGAAGTCGGTCGAGAATAAAGCGGATCGAGTCTGAGCTGAGTTGAACTTTGAAACAAAATTTTTGgagccttttttttctgaatcgATCTCATCATGGAGTACAAAGTGGAGGCGCATCGGATCATGAGCATCTCCTTGGGGAAAATTTACAACTCCCGAGTCCAGCGTGGAGGCATCAAGCTGCACAAAAACCTGCTCGTGTCTCTGGTCCTCCGAAGCGCCCGCCAGGTTTACCTGAGTGACTACTACGGCGGAGTGTGTCTGAACTCCCCGCACGGAGAGAGTAAAGAGTGGGAGCTCCAGGAGGCCGCGCAGGCGCAGCAGTCCCCACCGCCAGCGGCGGAGTGTGAGCGGCTCGAGCAGCCCGAGAGCGCCGCGTGTGCTGAAAGCCAGCCAGAGGCTAATTCCTCACTGGACTCGGACCTTAACGTTACAGGTGATGTTTCTCCGTCATCGCCAGAGTCTCCTGTGGCTAGTGACACTCAGTGTGAATCTAAAACAGCCCAGGTGGGCTCTTTGGACCGTGAAACGGATGCCGTTTTGGGAGCGGAAGGGAATTCAGAGCCTCCGAAACCAGCCGCCTGTTCAAACAGGAAACGCAGCGCTGAGAAAGCAGCCGCCGCCACCGACTCTCCTCTAAAACGGACTAAAAAAACCTCCTCAGATCAGGAGGAAAGCGAGGAGATGGACACGAGCAACGTGTCAAACCTCATCACCATTTTCGGGTCTAGTTTTTCCGGACTTTTGAGCAAAGACGGTGCGAAAGAGGACACCCAGGAGGACGCCGGCGACTCGGGCCAAATCTGCTGCGACCAAATGCTAAAGAATCTGAACCCATGGAGCACAGCCATCGTTGcgttttaagaaaaaaaagtgtttgagaCTTTATAGAAGTGTTCACACGTGGTGGTATCTGCTCTGGGTTACTCTAAAACACGTGGTTGCGGGACTTCCCACACCACGCGCGCGGTGCTGTCGAGTACGAGCCCGGCCTGCAGCGTTTTCACCACGGCCCAGTCCCAAATCAGcttctgtgtagtgcactatctGCGCAGTATGCCATACACTATGTGGTGTACTCATGAGGGGACTAAGGAGCCATTTGGAACACGGCCCGTGTTGTAAACCGAGGAATGTTAACGTGTTGGTGCTACTACAGAGAATTACAACGTCAAAGGAAATGACGTCATTGAACGgaactgaacttttttttctctctcaacaTTTGTGGGCTCAGTTGAGTTAAACCGGCAATCAGAAGATCAGGATGGACTGTGATTATTAGTGTGAAGTGTTATGCTAATGGCATTTgtacaaatgaaaatgttacaCTGATGTAAGAACTGCCTACAAACCAAGAGTCTGCAAGACTGAGGCCACTGGTTTTCCCCCAGATGTCTTTGTTTTATAAAGACTTGTACATTTGTAACATGGTTCCTGTACATATTGTTTTCAATGTTGCATTATGAATCTATGTATTTTGGTATTTACTATTCTGACTATTACGTGATGGTCACgtattaaaaaatgtgaaatgat

Function

NR:

description
PREDICTED: immediate early response gene 5 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917034.2 True 1850 mRNA 0.47 1 14670881 14672730

Neighbor

gene id symbol gene type direction distance location
LOC113527219 LOC108270689,LOC108429511,LOC107653644,LOC107715111,LOC107588053,LOC103463808,LOC100711005,LOC106955782 coding upstream 59316 14600430 ~ 14611565 (+)
mydgf mydgf,LOC107566370 coding upstream 183069 14481557 ~ 14487812 (+)
mibp mibp,LOC108271439,LOC103035840,LOC108430237,LOC107734093,LOC107702642,LOC107566367,LOC107698603 coding upstream 193130 14473342 ~ 14477751 (+)
atcaya atcay,LOC108270591,LOC108430235,LOC103374683 coding upstream 200894 14463188 ~ 14469987 (+)
c11h19orf44 c10h19orf44 coding upstream 280328 14383457 ~ 14390553 (+)
tal1 tal1 coding downstream 23853 14696583 ~ 14704088 (+)
tm2d1 tm2d1,LOC107653653,LOC107715116,LOC107669801 coding downstream 165767 14838497 ~ 14849100 (+)
frem1b LOC108271303,LOC108429520,LOC107669836,LOC105904425,LOC107728586,LOC107599441 coding downstream 377452 15050182 ~ 15079767 (+)
atpaf1 atpaf1 coding downstream 408190 15080920 ~ 15085382 (+)
rab3b LOC108270584,LOC108429523,LOC103027359,LOC107653655,LOC107592692,LOC107669838 coding downstream 415510 15088240 ~ 15096387 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding upstream 5817 14664701 ~ 14665064 (+)
G181300 NA non-coding upstream 232872 14437375 ~ 14438009 (+)
G181252 NA non-coding upstream 260804 14409722 ~ 14410077 (+)
G181236 calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933 non-coding upstream 291408 14375493 ~ 14379473 (+)
G181233 LOC108271251 non-coding upstream 309509 14360788 ~ 14361372 (+)
G181588 NA non-coding downstream 195197 14867927 ~ 14930862 (+)
G181599 NA non-coding downstream 288155 14960885 ~ 14977551 (+)
LOC113533733 NA non-coding downstream 321958 14994688 ~ 15002233 (+)
G181632 NA non-coding downstream 413171 15085901 ~ 15086320 (+)
G181851 NA non-coding downstream 620508 15293238 ~ 15294067 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 21196 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 70902 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 107871 14561555 ~ 14563010 (+)
LOC113531387 ctxn1 other upstream 430340 14222218 ~ 14240541 (+)
G181175 uhrf1 other upstream 496663 14165026 ~ 14174218 (+)
pdzk1ip1 NA other downstream 36197 14708927 ~ 14711727 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 996068 15668798 ~ 15673982 (+)
LOC113532318 NA other downstream 1582317 16255047 ~ 16256782 (+)
G182819 NA other downstream 1910573 16583303 ~ 16584943 (+)
G182877 NA other downstream 2240528 16913258 ~ 16922922 (+)

Expression


Co-expression Network