mark1 (mark1,LOC108271264,LOC108411950)


Basic Information

Item Value
gene id mark1
gene name mark1,LOC108271264,LOC108411950
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17281249 ~ 17331250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918740.2
CTCTGCGCGCTGCAGTTTCACCTGGAAGCGGAGCAGCCGAGCAGCAGCgcatcctccctctctctctctctctctctctctctctctttctctctctctctctctctctctctctcactctctctctctctctcctctctgtgcgGCTCCCGGCTCTCCGGCTGCGGCTCATGTCGGCTCAGCCGGGGTCTCGTTGTGCTCCTCTACGGACAGCTCCTGCCATTTTAGCGCTCAGGCCGGGCATGCCGGTGTAGAAGAGGTggcttttttcttcctctccccTCGTATCTCTCGTCCCTTCTCTGCGGCCTGAAACACAAAATGTCGACCAGAACGCCATTACCGACCGTTAACGAGCGCGACACGGAGAATCACACGTCCGTGGACGGCTACCCCGAACCCCCAGCACCTCCGGCTAAGTCGGCCAGCAGGCAGAGTCTGCCACGATGTCGCAACTCTGTGGCGTCCATCACAGACGACCAGCCTCACATCGGCAACTACAGACTGCTCAAAACCATCGGCAAGGGCAACTTCGCCAAAGTCAAACTAGCACGTCATATTTTAACAGGACGGGAGGTTGCTGTGAAGATCATTGATAAGACGCAGTTAAACCCCACTAGTTTACAAAAGcTTTTTCGTGAAGTAAGGATTATGAAGATTTTGAATCACCCTAATATAGTTAAGTTATTCGAGGTCATAGAAACGGAGAAGACACTTTATTTGATAATGGAGTATGCCAGTGGAGgcGAAGTATTTGACTACTTAGTTGCACATGGAAGAATGAAGGAGAAAGAGGCCAGGGCCAAGTTTCGACAGATTGTATCTGCAGTGCAATATTGTCATCAGAAGAGGATAGTCCACAGAGATCTCAAGGCTGAGAACTTGCTCCTGGATGCTGATATGAACATAAAGATAGCAGACTTTGGCTTCAGTAATGAATTCACCATTGGAAACAAGTTGGACACGTTCTGTGGAAGTCCCCCCTATGCTGCTCCTGAGCTCTTTCAGGGCAAGAAATATGATGGGCCTGAAGTGGATGTCTGGAGCCTGGGGGTCATTCTGTACACGCTGGTCAGCGGCTCGCTGCCGTTTGACGGGCAGAACTTAAAGGAGCTGCGAGAGCGAGTGCTGAGAGGGAAGTACCGTATCCCGTTCTACATGTCCACCGACTGTGAAAATCTACTGAAGCGACTGCTGGTGCTGAACCCAGGCAAACGTGGCAGTCTAGAGCAAATCATGAAAGACCGCTGGATGAATGTGGGTCACGAGGAGGAGGAGCTCAAACCATACACAGAGCCAGAAGCCGACTTCAGCGACACCAAAAGAATAGACCTGATGATTACTATGGGTTTCCCCAAAGAGGAGATCACTGATTCCTTAGTGGGTCAGAAATATGATGAAGTCATGGCTACATATTTGCTCCTGGGCAGAAAACCTCCTGAGTTTGAGGGAAGTGAGTCTCTGTCCAGCACAAACCTGTGTCAGATGCCCCGACCCAGCAGTGACCTGAATAACAGTTCATCCCAGTCTCCAGCTCATTCCAAAGTGCAGCGCAGCATCTCCGCCACGCAGAAACAGCGCCGCTACAGTGACCAtgTTGCCCCATCTATCCCACCGGCCGTGTCCTACACCAAGCGCACACAGGCCAACAGTGTGgagggagagaagaaagaggagtGGGAGGCGGCTCGTAAGCTCCCCACCTCCAGCTCCAAAGGAGACATGGCTGTCTCACCGCTGACCACACAAGACCGCAGGAAGTGTTCTATAGCCTCAGGGAATAGCACAACCGGAGGGATGACACGGAGGAACACTTACGTGTGTGAGCGTGCCAGCACAGATCGTTATTCAGCCATTCCTAATGGCAAGGACAGCAGtctgaCGGAGATGTCTGCCTCTGGCAGTGGCTCCTCTGTGTCTCCTGGCGCTTCCTCAGCACTGGCCTCAGCTAGGCCGCGTCATGTGAAGTCCATGTCTGCCTCAAGCCATCCCACCAAGTCCCCCTTGCCCCCAATAGAGGATAATGCAGAGTACAAGGGCCCTAGCTCCAGCGCCAGGGCACCTGCTGCATCTCCATCGACccacagcatcagcagtgtGACACCAGACCGAACACGTTTCCCTCGGGGCACATCGACCCGCAGCACCTTCCACGGAGCCCAGCTGAGAGAGCGGCGTAGTGCGACCTACAACGGACCGCCTGCCTCTCCCACGCTCTCGCATGACACGGGGGCTCTGGTCCACACTCGGAGGGGCACTTCGACGGGCATCATCAGTAAGATCACCTCCAAGTTTGTGCGTAGGCTACCCAGTGAAGGAGAGGCCAGATGCAGAGCAAACAGCTTAAGGAGCGGTTCAGGAGAACCTAAGGACGATGGGCGTGATTCTAAGCCACGATCTCTACGCTTCACGTGGAGCATGAAGACCACGTCGTCTATGGAGCCCGGAGACATGATGCGAGAAATCCGCAAGGTGCTAGACGCCAACAATTGTGACTACGAGCAGCGCGAGCGCTTCCTGCTTTTCTGCGTTCACGGCGACGCCCGTCAAGACAGCCTCGTCCAATGGGAGATGGAAGTATGCAAGCTGCCCCGCCTCTCTCTCAATGGCGTCCGCTTCAAGCGTATCTCGGGCACCTCCATCGCCTTCAAGAACATCGCATCCAAAATCGCCAATGAGCTGAAGCTGTGACCGgcattaaaaatcaaaacaggGAGCGATTCTGCCAAAAACTGCAAAATGGAAGCTTGCTACGTTGATGTCTACGTTCCCAGTCAGTTTGGGCACCATTTTGAGTTTACTGCTTTCTGAAGCTACTGCTGTATGGTTTGACCAGTGGATTTAAAAGATAagattgaggaaaaaaatgagcaTCCTTGGTATTTCCAGTTCCCTTCTTTTCTCTCAAGTCCCACATATACACAAGGTTAGCATAACCATCTTtgcaataataatgaaaacccCTGTCAGGGTCAGCAGGTTGGTGTTCCTTTACAGAACTACCTTTGTAGGCTAAAGCAGAGACTTTTAACGCTACTTTTTCCACATGTACAGTTAAGATACAGAATGTTTTGTTGAATTGTTCATAGACTTGTATAATACAAGACTCTTTCAGCCTACGTATCTGAAGGTGTTGTATAGTATTGAGTTCTGCACAGAAAATTTATGTTAAATGTCTTACTGTTTTGTTTAGCTTTTTGCTTTCCTTGTAcaattttagatatttttttgcctctgccatgtgacattttaatgattcttttatgtattttttttcacttttcaacaGGATGTAGAACCAGTAGATCAGTGGCGAGTTACTAAATAACAGTGTTTCATAAAACAGGCCGTGCACATTCCAAAGGCAAATTGTTTTAACCTGCAATCTTTTTATTCTTTCGCCCAAGTCTCAGAGTCGTGCTATTAGTTAGCAAGTTTGACACTCTGCCATTCCATGTATGCTAAAAAGGGATATAGCTTTTGAATTGATTGAATATATCGCTGTAGTTGTAGCAGATGTAGCCCAAATAGAACAGGAGTGGAACAGGGTTGGTTAAACAAGAATTTCTTTCAGCAGTTTATTTGAGTTGCATTTGATTTCATCTCATTCTCCCTGaagattttctgtttatttattatggtTTCTACACCACCTTTATTACGCTGCTTTAACTTGTCATCCTTGTGTGAAGGAAGTAGgatatgacatttttgtttttgaaaatgtactttaatTTGTTCCTTTTGTAATTAGTGATGATGGAGACAgcgatgatgatggtgatggtgatgatggtgatgtgtAAGACCACTTGTGCTGGAACATTTCCTCTTGTTCCTGTGTACTGAGGTAATGAGGGTTAAATGTGCAatgcttttttgttgtattaCTGTAATTCTGACACAAAAATGGTCCCCAACTGCACACATAACAAGAGAGAGCTcttgtttagtttgtttatttaaaactggtTTTAAAGTATCTTTCAGAGGTTTAAGCTGTGATCTGATTATGCTGATCCTTGAGGGGCATGGTGTTTCATGTTGTAACGGTACATTTCCTGAGCAGATGCTTGATTATGCTGCCTTAGAAGATGGAGCTGCTTGAAGGTGTTGGGAGAGACGGCAGACGATTTACTGAAAATGCAACTACCACCCACACCCCGTTTTCCCCCCAGTCATTTCACCACTACCGCCCCCGTACTCCCTCCAATCAGTGTAGTACTGTACATTTCTCAGTAAAGTCTCATGGGTCATAAAGGTTCAGTCTCACTGGTGCACATTAAAGCTTACTTGAAATGAGATTCGAGCCAAAA

Function

symbol description
mark1 Predicted to enable ATP binding activity; chemokine activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within immune response; microtubule cytoskeleton organization; and protein phosphorylation. Predicted to be located in dendrite and extracellular space. Orthologous to human MARK1 (microtubule affinity regulating kinase 1).

NR:

description
PREDICTED: serine/threonine-protein kinase MARK1-like isoform X2

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005524 ATP binding molecular_function
GO:0008009 chemokine activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08798 MARK; MAP/microtubule affinity-regulating kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918740.2 True 4316 mRNA 0.48 18 17281249 17331250

Neighbor

gene id symbol gene type direction distance location
ptk7a ptk7,LOC108411955,LOC107702250,LOC107588446,LOC107732247 coding upstream 3794 17240492 ~ 17277455 (+)
soul4 LOC108270966,LOC108411954 coding upstream 45561 17224426 ~ 17235688 (+)
tle2b LOC108271164,LOC108430094,LOC107676970,LOC107719559 coding upstream 214293 17000105 ~ 17066956 (+)
trnak-cuu_26 NA coding upstream 251305 17029872 ~ 17029944 (+)
tle5 aes,LOC108271216,LOC108430095,LOC107593322,LOC107586404 coding upstream 305672 16949748 ~ 16975577 (+)
commd2 commd2 coding downstream 115150 17446400 ~ 17449781 (+)
wwtr1 wwtr1 coding downstream 122532 17453782 ~ 17497179 (+)
LOC113528887 LOC108271171,LOC108439433 coding downstream 175957 17507207 ~ 17532678 (+)
cp cp,LOC100533122 coding downstream 203194 17534444 ~ 17545067 (+)
senp5 LOC108270997 coding downstream 307539 17638789 ~ 17645112 (+)
G182932 NA non-coding upstream 197720 17079637 ~ 17083529 (+)
G182910 NA non-coding upstream 291730 16989319 ~ 16989519 (+)
G182906 NA non-coding upstream 319950 16960659 ~ 16961299 (+)
LOC117598387 NA non-coding upstream 424112 16852408 ~ 16857137 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding upstream 555722 16708625 ~ 16725527 (+)
LOC113535983 NA non-coding downstream 85480 17416730 ~ 17423320 (+)
G183032 NA non-coding downstream 119207 17450457 ~ 17450736 (+)
G183058 LOC108270510 non-coding downstream 246392 17577642 ~ 17583785 (+)
G183478 NA non-coding downstream 393513 17724763 ~ 17725260 (+)
G183566 NA non-coding downstream 556877 17888127 ~ 17888353 (+)
LOC113528769 klc4 other upstream 58717 17196280 ~ 17222532 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other upstream 91934 17121899 ~ 17189315 (+)
G182877 NA other upstream 358327 16913258 ~ 16922922 (+)
G182819 NA other upstream 696306 16583303 ~ 16584943 (+)
LOC113532318 NA other upstream 1024467 16255047 ~ 16256782 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other downstream 34448 17365698 ~ 17411425 (+)
LOC113536271 ankub1 other downstream 108546 17439796 ~ 17446248 (+)
anos1b LOC108271321,LOC108439428 other downstream 267214 17598464 ~ 17636395 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other downstream 340921 17672171 ~ 17751502 (+)
ect2 ect2,LOC107674529,LOC107718889 other downstream 422926 17754176 ~ 17781814 (+)

Expression


Co-expression Network