ushbp1 (ushbp1)


Basic Information

Item Value
gene id ushbp1
gene name ushbp1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19781228 ~ 19796168 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918792.2
GGCTGTAATCATGGCTTCCATTAGTTACCAGATGTCTTTATCACAATGTAGAGGAGAAATTGAACCTCTTTGAATAGAGTCAGAGcagcagctagctagcaaagaggtgggatgggaaaaaaaaaaaacctcttcctGATCCGACAGCGCTGCATGCCACGAGACGGGCACTGTGTGGATCTACTCAAGCCTATAATCACACCCTGAGCAGCAGGACGGCAGCTCCTGTCCAGAAGCCTACAGCTCCactgtgtgctttgtgtgttcTTAAGCAAGGGGACGGAGGAAAAAGCGTAGCAAGAGAACCAAAATGACAGAGAGGACGGACAGCCTGGCGTGTGCTGACTCAGAGCTGGCACAGTGCGAGGCCGAGGTGGGCACTTTGCTCCAAATCATATCTGAGCTTAACGTGAAGATGGGTGCCCTGAAAATTCCACGGGATCGAAAGGACTATGAGACACAGGACCAAGGCTGCAAGCCAGTTTCAGACCTGAGCTCCAGTCCCCTGGGACCACAGAGCAGCCCAGTGGCTCATGCTGGAACAGCATCTATGGAGTCAGTCACTAAGCAATACTCAGGGGAACATGAagGGTGCAGTGGAGAGCTATGGACAAAGCTCCAGCAGGTTTTGTCCACTCTGGAGTCATCTGCTGGCCGAGGGAGAAAGTTGGTCGCCCCTCACATTCATGATGATGAAAAGACCCAGGAAAAGCATATTACTGCAGCGCATGATACCTGGGTTCAGGCCACTCAAGTATTAGAAGAAATGGAGAGGGAGCTTGGAATCTCTTACCTATCTGCATTACCCACTAAAGAGCGTCAAAAGTATCAAAAAGAGGTTCTGTCGCTGGGTAAACTCAACCGGGAGCTGAGCAGCAGCCTGCAGAAACGTCAAGAAGATCAGAAGAAGATGGAAAGAGCCATtctggagatggaggaggagaagaaaagactTCGAGAGAAGTTGGACgagctgaaaaacaaatggCTGATTACAGCTAGTTGTTCTCCTCCCAGAAGTCCATCCTTGTCCTTTAGTAGGACCCCAAGCCCCTGTTGGGCATCTCCTACGATCCCTGCGTCTCCTCTTTTCTCGCGTAGAATGCCCATCTCACCCCCTGGCTCACCATCCAGACCATCAAGATCCAGTTCTGGCAGCTCAGTTCTGGAAACCGAGACAGAGCGTCTCCAGAGGTCTTTGGAAAGACTGAAGGCAAGAAATGAGCGTCTGACAGCAGCTCTAGAGAGACGGAAGAGCGAGTCAGAGCAGGTCAGCATGGCTCTGAGCCGCCACGAGGCTGACTGCTCAGCGCTGCAAATGGCTCTCACATACTGTGAAGAATGTGAAGAGGCATACAGTGATCTTTTTTCCCTGTATGAAGCCAGGAAACAACAGAATGCTGCGGTAGCAGAGCCGTCTACTCCAGAACAAACTGGCAATTTGAATACTGCTAATGAGGAGTCATCCTGTACAACAGTGACCGCCCAGAACAGttTGTCTACAGAGGAGTTTGAAGATAAGACTGGAGTCATTCTGCAGAAGATCTCCCGTTTGAAGCAGGACAGGGCAGCAGTGTGTATTCCACAGGAGACCAGGACAGGAGAAGGGAAGCTTAGCCCTGATACAGGCACGCTGGCTGGAGCGAGGAGGCTAAGCTTTCTGTCCTCAAACAACCccaaagaagagaaaacagcACTGCTGTATGAGCTAGTCAACGTCAGGGAGGAGATGTCTGAGCTGCGGGGACTCATCAGGCTGAAGGAGAAGGAGCGGCGCTCTCTGGAGTTTTCTCTGGTGGCCCATAGGTGTCAGGACTCAGCTGGGGCTGCCATGGCACAGAGCCTGCGAGCGGAGCTGGAGGACAGGAGAGCAGAACAACAGAGGATAGATGAGTATCGGGCCAAGCTGGAGAGTGGAGCGGGAATTCCTGGGCCACGGAATCATATCCTCATGAGAGAACTTCAGGCGATACTACAAAGGGAGCAGACACTGAAGAGGAGAGTGATATCTTTGCGAGAGGTGTTGGACACAGCGATGATGGACAGCACCACACAGAGGAGAGTTAACAAGGAGGAAGTGGCCCGCCTCCTGTCCTGTCACAATAAAGCCATGAGTGCATGCAGGAGCGCTCGCAAAAAGCACCACGAGCAGCTGTGGAGGATCGAGCGACAAATGACAGCCATGCAGGAACGTCACGAGTCTCAACTGGCTGAACTAAAAACAACGCTGGAGACgctggagtggaagaaggaGGAGACAGTGctctaaaacacattttataaactGGAATATAAcctcagtaaaaatattttagtattcTATGTAACTTAAGTTCCAGAGGGCAGATTAGAGCAGAGGACACTTTTAGGTCACAATGAAAAGTTTCATTTAGGTGTTTGAATGAAAATACTTTGCTAATTTATTTGCAAAGCAATGACTTAAGTGTCCTTTAAACTTCTCTGTATAAACCACCCTAGGGCTAATGAGTTTCCTTTTTACAAGCCATTCTGTGATATTATTAGCGGCATATAAGCTTGCTCATTTAAGAGAGTCTTTGTGGGAATACTGGGATGAACAGATCGCGAGAAAATGGGAGCAGTGTTTACCAAAGGTCATGTATTTTTCTGCATGCAAAAAACCACGCTCCCTGCAAAGATCTGGCCCTTCGCTTCAGTCAAACAAAAGATGAAAGACAAAAGAGGCTGAACGTAGAGGATCTCAGCTTGGCCATTTGTCTCCTCCTTTTACTGAGTCCACCTTTTTTAAGACTGCACGCTCCCAACCCCCAGCCTCGAGGCAGTCGGCCGCAGCTGTGAATGCCAGTCAGAAGGTTGAGGCAAAGGTTGAGTGTCACACCCCCAGGGGTCAAAGGGCAGCCTGTACCGTTGTTGAAGCCTGTGAATGTAGGGGTTACGAGGCCATGCTTAACTGAGACTCTAGCCTGAGCTGGAGATAAAGAAGATCAGAGGGATGGATGACCGAGTCTGCTCCATGTGCTGCACTGATCATCCTAATGATAATGAATCCTGAGTGCAGCAATTATTCTCAATCTTATCTAATGATGTTTTATAGATGTAAGATTTAAGGCTGGgcatatgatgatataataatgatatCACTTTTCTGTAAGATTGTGATATCTTTtagtacaatttaaaaaaaacaattactaaCTGATTGGAAGGATTTGAGTTGGTTCCTGCATTTTGgcttaaatgtatttttgtatacaTTATGTAAAAGTATTATTAGACTCAGTTTTTCACAGTTTCTTTAAATGCTACAAACACTATAGTTTTTCTGGAGGTTTCCTAGCAAACCTGCTGTCTTTGAATGTCTTTGagaattctgttttttttgatAATGATGTAACACCAAATGTCAATTATGCAAACTTCATATCAAATGTAATCTCACATACTGTGAACAGTATTTGATATAAAGAGCAACCATGCAAACTTG
>XM_034308741.1
aCATCCAGTACGTCATGGATCTGATCCAATACGTCATCGGGCTACAGGCTGCAGTGAGGACACACTCACTCTGAGTGCCTAAGAACATCCTTATCCGTGATAAAAGCACTCGCTGCATGCCACGAGACGGGCACTGTGTGGATCTACTCAAGCCTATAATCACACCCTGAGCAGCAGGACGGCAGCTCCTGTCCAGAAGCCTACAGCTCCactgtgtgctttgtgtgttcTTAAGCAAGGGGACGGAGGAAAAAGCGTAGCAAGAGAACCAAAATGACAGAGAGGACGGACAGCCTGGCGTGTGCTGACTCAGAGCTGGCACAGTGCGAGGCCGAGGTGGGCACTTTGCTCCAAATCATATCTGAGCTTAACGTGAAGATGGGTGCCCTGAAAATTCCACGGGATCGAAAGGACTATGAGACACAGGACCAAGGCTGCAAGCCAGTTTCAGACCTGAGCTCCAGTCCCCTGGGACCACAGAGCAGCCCAGTGGCTCATGCTGGAACAGCATCTATGGAGTCAGTCACTAAGCAATACTCAGGGGAACATGAagGGTGCAGTGGAGAGCTATGGACAAAGCTCCAGCAGGTTTTGTCCACTCTGGAGTCATCTGCTGGCCGAGGGAGAAAGTTGGTCGCCCCTCACATTCATGATGATGAAAAGACCCAGGAAAAGCATATTACTGCAGCGCATGATACCTGGGTTCAGGCCACTCAAGTATTAGAAGAAATGGAGAGGGAGCTTGGAATCTCTTACCTATCTGCATTACCCACTAAAGAGCGTCAAAAGTATCAAAAAGAGGTTCTGTCGCTGGGTAAACTCAACCGGGAGCTGAGCAGCAGCCTGCAGAAACGTCAAGAAGATCAGAAGAAGATGGAAAGAGCCATtctggagatggaggaggagaagaaaagactTCGAGAGAAGTTGGACgagctgaaaaacaaatggCTGATTACAGCTAGTTGTTCTCCTCCCAGAAGTCCATCCTTGTCCTTTAGTAGGACCCCAAGCCCCTGTTGGGCATCTCCTACGATCCCTGCGTCTCCTCTTTTCTCGCGTAGAATGCCCATCTCACCCCCTGGCTCACCATCCAGACCATCAAGATCCAGTTCTGGCAGCTCAGTTCTGGAAACCGAGACAGAGCGTCTCCAGAGGTCTTTGGAAAGACTGAAGGCAAGAAATGAGCGTCTGACAGCAGCTCTAGAGAGACGGAAGAGCGAGTCAGAGCAGGTCAGCATGGCTCTGAGCCGCCACGAGGCTGACTGCTCAGCGCTGCAAATGGCTCTCACATACTGTGAAGAATGTGAAGAGGCATACAGTGATCTTTTTTCCCTGTATGAAGCCAGGAAACAACAGAATGCTGCGGTAGCAGAGCCGTCTACTCCAGAACAAACTGGCAATTTGAATACTGCTAATGAGGAGTCATCCTGTACAACAGTGACCGCCCAGAACAGttTGTCTACAGAGGAGTTTGAAGATAAGACTGGAGTCATTCTGCAGAAGATCTCCCGTTTGAAGCAGGACAGGGCAGCAGTGTGTATTCCACAGGAGACCAGGACAGGAGAAGGGAAGCTTAGCCCTGATACAGGCACGCTGGCTGGAGCGAGGAGGCTAAGCTTTCTGTCCTCAAACAACCccaaagaagagaaaacagcACTGCTGTATGAGCTAGTCAACGTCAGGGAGGAGATGTCTGAGCTGCGGGGACTCATCAGGCTGAAGGAGAAGGAGCGGCGCTCTCTGGAGTTTTCTCTGGTGGCCCATAGGTGTCAGGACTCAGCTGGGGCTGCCATGGCACAGAGCCTGCGAGCGGAGCTGGAGGACAGGAGAGCAGAACAACAGAGGATAGATGAGTATCGGGCCAAGCTGGAGAGTGGAGCGGGAATTCCTGGGCCACGGAATCATATCCTCATGAGAGAACTTCAGGCGATACTACAAAGGGAGCAGACACTGAAGAGGAGAGTGATATCTTTGCGAGAGGTGTTGGACACAGCGATGATGGACAGCACCACACAGAGGAGAGTTAACAAGGAGGAAGTGGCCCGCCTCCTGTCCTGTCACAATAAAGCCATGAGTGCATGCAGGAGCGCTCGCAAAAAGCACCACGAGCAGCTGTGGAGGATCGAGCGACAAATGACAGCCATGCAGGAACGTCACGAGTCTCAACTGGCTGAACTAAAAACAACGCTGGAGACgctggagtggaagaaggaGGAGACAGTGctctaaaacacattttataaactGGAATATAAcctcagtaaaaatattttagtattcTATGTAACTTAAGTTCCAGAGGGCAGATTAGAGCAGAGGACACTTTTAGGTCACAATGAAAAGTTTCATTTAGGTGTTTGAATGAAAATACTTTGCTAATTTATTTGCAAAGCAATGACTTAAGTGTCCTTTAAACTTCTCTGTATAAACCACCCTAGGGCTAATGAGTTTCCTTTTTACAAGCCATTCTGTGATATTATTAGCGGCATATAAGCTTGCTCATTTAAGAGAGTCTTTGTGGGAATACTGGGATGAACAGATCGCGAGAAAATGGGAGCAGTGTTTACCAAAGGTCATGTATTTTTCTGCATGCAAAAAACCACGCTCCCTGCAAAGATCTGGCCCTTCGCTTCAGTCAAACAAAAGATGAAAGACAAAAGAGGCTGAACGTAGAGGATCTCAGCTTGGCCATTTGTCTCCTCCTTTTACTGAGTCCACCTTTTTTAAGACTGCACGCTCCCAACCCCCAGCCTCGAGGCAGTCGGCCGCAGCTGTGAATGCCAGTCAGAAGGTTGAGGCAAAGGTTGAGTGTCACACCCCCAGGGGTCAAAGGGCAGCCTGTACCGTTGTTGAAGCCTGTGAATGTAGGGGTTACGAGGCCATGCTTAACTGAGACTCTAGCCTGAGCTGGAGATAAAGAAGATCAGAGGGATGGATGACCGAGTCTGCTCCATGTGCTGCACTGATCATCCTAATGATAATGAATCCTGAGTGCAGCAATTATTCTCAATCTTATCTAATGATGTTTTATAGATGTAAGATTTAAGGCTGGgcatatgatgatataataatgatatCACTTTTCTGTAAGATTGTGATATCTTTtagtacaatttaaaaaaaacaattactaaCTGATTGGAAGGATTTGAGTTGGTTCCTGCATTTTGgcttaaatgtatttttgtatacaTTATGTAAAAGTATTATTAGACTCAGTTTTTCACAGTTTCTTTAAATGCTACAAACACTATAGTTTTTCTGGAGGTTTCCTAGCAAACCTGCTGTCTTTGAATGTCTTTGagaattctgttttttttgatAATGATGTAACACCAAATGTCAATTATGCAAACTTCATATCAAATGTAATCTCACATACTGTGAACAGTATTTGATATAAAGAGCAACCATGCAAACTTG

Function

symbol description
ushbp1 Orthologous to human USHBP1 (USH1 protein network component harmonin binding protein 1).

NR:

description
Usher syndrome type-1C protein-binding protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918792.2 True 3463 mRNA 0.47 14 19783734 19796168
XM_034308741.1 False 3426 mRNA 0.47 15 19781228 19796168

Neighbor

gene id symbol gene type direction distance location
gtpbp3 gtpbp3 coding upstream 17177 19746882 ~ 19764051 (+)
dazap1 dazap1,LOC107685225 coding upstream 89448 19676216 ~ 19691780 (+)
ndufs7 ndufs7,LOC107680537,LOC107747413,LOC107597168,LOC107685366,LOC107553547 coding upstream 121808 19652838 ~ 19659420 (+)
ctdspl3 LOC108270532,LOC108435930,LOC107597167,LOC107757917,LOC107685268 coding upstream 132312 19642225 ~ 19648916 (+)
arid3a arid3a coding upstream 143037 19607447 ~ 19638191 (+)
nr2f6b nr2f6,nr2f6b,LOC107680506,LOC107747262 coding downstream 3488 19799656 ~ 19808358 (+)
pole4 pole4,LOC106613703,LOC107685140 coding downstream 58517 19854685 ~ 19860286 (+)
ctns ctns coding downstream 107990 19904158 ~ 19911209 (+)
LOC113535596 vmac,LOC107680554 coding downstream 163533 19959701 ~ 19964557 (+)
gadd45ba gadd45b,LOC107553537,LOC107597151,LOC107757925 coding downstream 173389 19969557 ~ 19971347 (+)
G184718 NA non-coding upstream 76978 19703635 ~ 19704250 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding upstream 116737 19661092 ~ 19664491 (+)
G184614 NA non-coding upstream 178589 19548663 ~ 19602639 (+)
G184503 NA non-coding upstream 318385 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 319538 19459818 ~ 19461690 (+)
G184823 NA non-coding downstream 12545 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 125303 19921471 ~ 19947483 (+)
G184900 ndufa11 non-coding downstream 158426 19954594 ~ 19955040 (+)
G184988 NA non-coding downstream 468768 20264936 ~ 20265620 (+)
G184987 NA non-coding downstream 469540 20265708 ~ 20320904 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 80954 19695227 ~ 19700274 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other upstream 226259 19532081 ~ 19554969 (+)
LOC113546543 NA other upstream 233016 19526877 ~ 19548212 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 293444 19486328 ~ 19487784 (+)
adgrl4 adgrl4,LOC102783218 other upstream 510967 19254931 ~ 19270261 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 31818 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 39977 19836145 ~ 19845238 (+)
ccl44 LOC108271213 other downstream 69630 19865798 ~ 19871463 (+)
G184979 NA other downstream 353803 20149971 ~ 20150894 (+)
wipf2a LOC108270800 other downstream 1393080 21189248 ~ 21210539 (+)

Expression


Co-expression Network