wwtr1 (wwtr1)


Basic Information

Item Value
gene id wwtr1
gene name wwtr1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17453782 ~ 17497179 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919303.2
AATTGAATATTCATGAGGGAGTGCTGACACAGGCGCTGTGGAAGAAAAGTGGAGTTTACAAAGTTTGTGACGCCCGGGAGAGACTAGCACTGGATCTGGGAAGGTCGGCCGAGGGAAGAAAAAGAGTTACCTCGAAACTTTTTCACAGGTCGAACCaactgagatgtttttcttagCCTTTCGTTAACTTTGTTGGgctaaaatctaaataataagAACTAGTACCGGAGGCCTAAACGATTTTAAAGGAAAGGCCTCGTTTTAAGATTTCGTccgcttgttttttttttgtaacgaGCAAACCGTTATTTCGTTATTAATTTGTTTAgttatcaaaacaaaacaaaacaaaaaacaaaacaaaaatgagcaGCAACCCAGTTCAGCCTCTACCAGGCCAGCAAGTGATCCATGTCGCCAAGGACCCGGACACGGACCTCGAGGCGCTCTTTAACGCCGTGTTGAACCCGCGACCGAGCTCCTGGAGGAAGAAGCACCTGCCCGAGTCGTTCTTCAAGGAGCCGGACTCCGGGTCGCACTCGCGCCAGTCCAGCACGGACTCGGGCAGCCAGCAGCCGCCGAGGCTCCCGCCGCAGCACGTGCGCTCTCATTCTTCCCCCGCGTCACTGCAGCTGAGACCCGGAGCGCTCGCGACCGCCTCCGCCGCCGTCACCGCGAGCCCCGTGCAGCACGCGCACAGCCGCCACCAGTCCTTCGATGTCACCGACGAGCTGCCGCTGCCGCCCGGATGGGAGATGGCGTACACGTCCACCGGCCAGAAGTACTTTCTCAATCACGTTGAGAAGATCACCACATGGCAAGATCCTCGCAAGACCATGGCAGCCAGCATGAATCAGATGAGTCTCCATGCTCAGGCCACCAGCAATAATGGTGGTGTACAGGGGCGCTCCATGGCCCTGTCACAGCCAAACCTCGGACAGCTGCCGGAAGGCTGGGAGCAGGCAGTCACCCCTCAGGGAGAAATTTACTTCATTGACCACAAAACCCAGAGCACATCGTGGCTCGACCCCCGGGTGGACTCTCGCCTCATGATGTCCCAGCATCAGCACCATCAGCAGCATCTCCAGCATGCccagcaccagcagcagcaacagcaggtACAGGCTCAGTCTCAGGCCCTGGGCTCAAGTGGCTCCATGCCCCAGCAGCAGAGCTCTCAGTCTGGTATGATGGGAATGGGCAACCCACTGAGTGCCCAGCAACAGCACCAGCAGAAGATGCGACTGCAGCGCATCCAGCTTGAGAGGGAGCGCATTCAGAGGAGGCATGAGGAGCTGAGGAGACAGGAGGTGGCACTCTGCAGACAGATCCCCATGGATTCAGACAACATGGCGTCCGTAGCTCCTACCATTAACCCAGCTGCCATGAACCAAGGCACTATTCCAACCAGCAGCTCAGACCCCTTTCTGAACAGtGGGCCATACCATTCACGTGAGCAGAGCACGGACAGCGGCCTGGGCCTGGGCTGCTACAGCATCCCCACCACTCCTGAGGACTTCCTCAGCAACATGGAGGAGATGGACACGGgtgaCAACATGGTGCCAGTCAACATGAACGTGCCACAGCAGAGCCGTTTCCCCGACTTCCTAGACTCCATGCCTGGCACTAACGTGGACCTGGGCACCCTGGACGGCACAGACCTCATGCCCATCCTCAATGACGTGGAGTCTGTCCTGAACAAGAATGAGCCTTTTCTCACCTGGCTCTAAAGAGGTGCTGAGGTTCCAAGGGGAAGGCTAAAGACTTTTAGCAGCAGTGCTACCTTTCTGAATTTTAACTCAATCAGTCTCTCCGCTCTCTCATTTGTAATGTGCCTATATTGctccctttttaaaaaaaaaaaatatcctggTTACTGTAAATTTTGAGTGAAGAGCACAACAAAAACCAAAGTGTTCAGCCTAAGAACAAAGAACAAGCATACGTCAATCAAATTTGTCCAGGTGTGGTGGAAAAGTCATACGTCttttgtatatactgtagtatagaGTAGGTTTTTACTGTCACTGAGTGTAGCTTGATCAAAAATGTCATTCCTCTGGCTTTGGGCAGGACTGAACAGCTATTGGTTGCTGTTGGTCTCCATAAATGATTGTTGATGTAGGGACACTTGGTAGGCACCAGCAGAGGGAGCCACTGCCTCCACTATGAACTGGAGACCGTGTTGGCTTCAATGACGTATGCGTATTAAGCACGTTAGCCAGTTCAGTGTTGTCTGCACTAGAGGGGAGCCTTACTGATCAATTAACATTCAAGCGGCCTTATGAACAAACTTTCCTTTTCTTCACAGATACCAAATATGTTTCCTACTGTATTCAGCACGATAGCTTTGTCATAACTCGATTTGCAGTTTAGTTTCTAAAGAAACAATATTTCATTCGCATTTAGAGGTTTATACTCAAGCTGATCCCAATTTAGCTATTGTATCAAGTAAGCTCATGCCTTTGAAATATGGCAGTTTGCATCTGTAGACCTACATTTTATACCATGTACTTTTTGTGTACTGCTtcagtattctttttttttttttttttaaactgttaaattcTCTAGATGTGTCCCTTGACATCTGGTGCATTTTATGAGTTTTGATATAGAGTTTGCCTTTTTAGTATTTATCGAGagctatgatttttttaaaaaaaatagagttttagttgttttttaatgaaattgaaaTTTCAAAGCACTACAAATCAGCACGGGGTTAAGTTGGATCTTATAAGTAAATGTTGAAGTTTCATGTGACGGTTCCTGCTCTGTGTTTCTTCACTGTACTGTGAGGTTCTTTAATCCATTTAATCCGAAGCAGACTACATGTTGGACTCTTCTGCATAGTAGGACTGCCTTTAACTCAGTGGTGAACAGGTTTCATAATAATCTGCAGGGAATATGCAAAACAAGAGTATTTTCTAGCAACCAGAAATGATCGTCTCTGAATTTTGGGGGATTGAATAACGAACACTCGGAACTGGATGAACGTGGTAGATCACATGAtcttgctttatttctttaGCTAAGCTGAAATCCAGTGACCTTTTTCTAtgtctgtaatatttttgtatcGGATGTTAAATGACTTGTTAGCTATTCCTAGCATTGGTGGTGTATAAATCCACCTTATATTGACTACGCAGCATATTGTTATTTTGTATACTGGCAACAGTTCAGGGGCAAAGGATAGATGGATAAATTGATGGGCTTTATCAGTGGGTGGGTGGGGGTAGGGGTGGTGATGATGCACTATCATTAATTCTGGGTTAAACTGAACTCATGACATCCTTTAGACAGGATTGATTGGTTAAGTACTGAATCTTTCAAGCAAGTGCATGCTTGAACCCAGCTGACCACTTTCTAAATGTGTAAGATGGAAACgagacaaaatgtggaaaagagGAAAGGCCCTGTGGTTAAAGTCAGTCATAACAAAGAGTGGTTCCTGAGTGGCTTCCTGTTATTTTGTTCTCTACATAAAGTGATTATTCCAGGGCTAGAGCATGGTGCAGGTTATTGTTAATAAGCACAGCGTTTGCATCTGATCATCTATGCATGTTAGAGCAATATATTTACACAAAGCAATATGTTGGACAGAAAGAAGGAGGTGTTTTACTAGTTTATTGAGTggtgtaaaaaagaaaagtgattCTCTGTAGCATTATCTAAAAGCATGGTtgtgtagcacacacacactacctagCCACAGTAACACGGGAAGCTTGTGTTTGTTAGACTCCAGGGATGTTGGAGGAAGGCTTGGAcaacacgcatatacacactgaaacaAAATGACCGCTTACTGTATTTGTGGGATGTATGGAGGCGATTGTAAGAACTATAACCTCACAAAGAAATCTCTGAAACTGAAGTGTAACTTGTTgagcaaccaaaaaaaatttaataaaattgtgtaCCACAGATTGTATGTGTGAATTGTTTGGCAGATTTCAGTGCATAAATTGTTAATGGAGTGGAAGTGGAATAAATTTGagtatttattctt
>XM_026919313.1
atgagcaGCAACCCAGTTCAGCCTCTACCAGGCCAGCAAGTGATCCATGTCGCCAAGGACCCGGACACGGACCTCGAGGCGCTCTTTAACGCCGTGTTGAACCCGCGACCGAGCTCCTGGAGGAAGAAGCACCTGCCCGAGTCGTTCTTCAAGGAGCCGGACTCCGGGTCGCACTCGCGCCAGTCCAGCACGGACTCGGGCAGCCAGCAGCCGCCGAGGCTCCCGCCGCAGCACGTGCGCTCTCATTCTTCCCCCGCGTCACTGCAGCTGAGACCCGGAGCGCTCGCGACCGCCTCCGCCGCCGTCACCGCGAGCCCCGTGCAGCACGCGCACAGCCGCCACCAGTCCTTCGATGTCACCGACGAGCTGCCGCTGCCGCCCGGATGGGAGATGGCGTACACGTCCACCGGCCAGAAGTACTTTCTCAATCACGTTGAGAAGATCACCACATGGCAAGATCCTCGCAAGACCATGGCAGCCAGCATGAATCAGATGAGTCTCCATGCTCAGGCCACCAGCAATAATGGTGGTGTACAGGGGCGCTCCATGGCCCTGTCACAGCCAAACCTCGTGATGTCCCAGCATCAGCACCATCAGCAGCATCTCCAGCATGCccagcaccagcagcagcaacagcaggtACAGGCTCAGTCTCAGGCCCTGGGCTCAAGTGGCTCCATGCCCCAGCAGCAGAGCTCTCAGTCTGGTATGATGGGAATGGGCAACCCACTGAGTGCCCAGCAACAGCACCAGCAGAAGATGCGACTGCAGCGCATCCAGCTTGAGAGGGAGCGCATTCAGAGGAGGCATGAGGAGCTGAGGAGACAGGAGGTGGCACTCTGCAGACAGATCCCCATGGATTCAGACAACATGGCGTCCGTAGCTCCTACCATTAACCCAGCTGCCATGAACCAAGGCACTATTCCAACCAGCAGCTCAGACCCCTTTCTGAACAGtGGGCCATACCATTCACGTGAGCAGAGCACGGACAGCGGCCTGGGCCTGGGCTGCTACAGCATCCCCACCACTCCTGAGGACTTCCTCAGCAACATGGAGGAGATGGACACGGgtgaCAACATGGTGCCAGTCAACATGAACGTGCCACAGCAGAGCCGTTTCCCCGACTTCCTAGACTCCATGCCTGGCACTAACGTGGACCTGGGCACCCTGGACGGCACAGACCTCATGCCCATCCTCAATGACGTGGAGTCTGTCCTGAACAAGAATGAGCCTTTTCTCACCTGGCTCTAA

Function

symbol description
wwtr1 Predicted to enable transcription coactivator activity and transcription corepressor activity. Involved in regulation of gene expression. Acts upstream of with a positive effect on BMP signaling pathway. Acts upstream of or within several processes, including animal organ development; epithelial cell differentiation; and negative regulation of retinoic acid receptor signaling pathway. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; digestive system; endocrine system; head; and mesoderm. Orthologous to human WWTR1 (WW domain containing transcription regulator 1).

NR:

description
WW domain-containing transcription regulator protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919303.2 True 4021 mRNA 0.46 7 17453782 17497179
XM_026919313.1 False 1251 mRNA 0.61 6 17454147 17494888

Neighbor

gene id symbol gene type direction distance location
commd2 commd2 coding upstream 4001 17446400 ~ 17449781 (+)
mark1 mark1,LOC108271264,LOC108411950 coding upstream 122532 17281249 ~ 17331250 (+)
ptk7a ptk7,LOC108411955,LOC107702250,LOC107588446,LOC107732247 coding upstream 176327 17240492 ~ 17277455 (+)
soul4 LOC108270966,LOC108411954 coding upstream 218094 17224426 ~ 17235688 (+)
tle2b LOC108271164,LOC108430094,LOC107676970,LOC107719559 coding upstream 386826 17000105 ~ 17066956 (+)
LOC113528887 LOC108271171,LOC108439433 coding downstream 10028 17507207 ~ 17532678 (+)
cp cp,LOC100533122 coding downstream 37265 17534444 ~ 17545067 (+)
senp5 LOC108270997 coding downstream 141610 17638789 ~ 17645112 (+)
phka2 phka2,LOC108439424,LOC107718215,LOC107715813 coding downstream 151756 17648935 ~ 17669132 (+)
nlgn1 nlgn1,LOC107593140,LOC106584306 coding downstream 381061 17878240 ~ 18133981 (+)
G183032 NA non-coding upstream 3046 17450457 ~ 17450736 (+)
LOC113535983 NA non-coding upstream 30462 17416730 ~ 17423320 (+)
G182932 NA non-coding upstream 370253 17079637 ~ 17083529 (+)
G182910 NA non-coding upstream 464263 16989319 ~ 16989519 (+)
G182906 NA non-coding upstream 492483 16960659 ~ 16961299 (+)
G183058 LOC108270510 non-coding downstream 80463 17577642 ~ 17583785 (+)
G183478 NA non-coding downstream 227584 17724763 ~ 17725260 (+)
G183566 NA non-coding downstream 390948 17888127 ~ 17888353 (+)
G183578 NA non-coding downstream 405606 17902785 ~ 17902984 (+)
G183585 NA non-coding downstream 418824 17916003 ~ 17916210 (+)
LOC113536271 ankub1 other upstream 7534 17439796 ~ 17446248 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other upstream 42357 17365698 ~ 17411425 (+)
LOC113528769 klc4 other upstream 231250 17196280 ~ 17222532 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other upstream 264467 17121899 ~ 17189315 (+)
G182877 NA other upstream 530860 16913258 ~ 16922922 (+)
anos1b LOC108271321,LOC108439428 other downstream 101285 17598464 ~ 17636395 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other downstream 174992 17672171 ~ 17751502 (+)
ect2 ect2,LOC107674529,LOC107718889 other downstream 256997 17754176 ~ 17781814 (+)
G183549 NA other downstream 298266 17795445 ~ 17796619 (+)
LOC113526284 naaladl2 other downstream 669443 18166622 ~ 18409057 (+)

Expression


Co-expression Network