tmem259 (tmem259,LOC106613615)


Basic Information

Item Value
gene id tmem259
gene name tmem259,LOC106613615
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20548259 ~ 20563932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919781.2
TGTAACACCTTCTCTTTTTTTGGTCACTCCCAAGTACGCTTAAAATCTTGTGTAAACAGGAGAACCGAATGGGAGTCACTGTACTGTCCGTCGAGAAAAGACCGTGTGGgattataataataagttttaGTGGCTGGTGTGTGAGATTTACATGGAGCTGGTGTTAAACAGCACAACATACGGGTCCTGTGGTGACCATAGCTACTAACCAGCTGCGGCTAACTCATTAGTTTGCGGAGCTAGCTTAGCTAAACCGTGGCGCCGATATCAGACTTCACTCAGGATTATATCTTTCTGTGCGTTAGTTATTTGAATACATTACATCGAAATACAAAACGAGAGCTGGTTAAGAAAAAAAGCGTACAATGTTAGCAGGATAGTAAGGAGTTTGTTAGCTCGCTAGCTAGGCAAACTTGGCTAAGGTAAAACAGTGCtgcgttagctagctagctagctagttagttagttagcaaCCGGAATAAACGTCTGCTGAAGACCGGACAGCTAGTTTACAGCGTGACATGGTAAACAACACACTTGGCAAGTGCACTCGTTTTTGCTAGCTAGCGACTCTGAAGCCATGTCATGGGACATGTATAGGTAGCTAGTTAGCAGTGTAGCTTTAACCAAGGGtcgtgttatttaaaaaaaaaacatattttatatatgtgtagtAATCCTCGCAGTAAGCGACAAGCTAATTAACGTCACGAGTCAGCTAAGCTACACATCGTGCTGTTTGGGTCTGAtttggtggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagcttcATTACTCCCCCATGACCCACACTGGCAGTTGTGTTCATCCAGCTGTGCCACCGGAATAACAATGTCAGACAATCAGGGCAACGTGAACAACAACAACGTGCctctaaacaacaacaacaacaacggcGCGGCGAACCGACTCCGGAACCCGAACATCAACCAGAACCCGCTCATCAATGTGCGGGACCGGCTCTTCCACGCTCTCTTCTTTAAGATGGCAGTCACATACGCCAGACTCTTTCCTCCGTCTTTTCGCCGGGTTTTCGAGTTCTTCGTGCTTCTGAAGGCCTTGTTTGTGCTCTTCATTCTGGCCTACATCCACATTGCCTTCTCTCGTTCACCCATTAATTGCTTGGAGCACGTACGTGAGAAATGGCCACGCGACGGCATCCTGCGTGTGGAGATTCAGCGCAACTCCAGCCGCGCTCCCATATTCCTGCAGTTCTACGAGACGGAGGGATTCCAGGGGCTTGTCAAAGAGCCGGACAGGGACACCGAGGACACCAGCCGAGTTCCCGTTCACcaagaggatgaggatgaagaggagatGACGGTTGACATGTTTGACAACAGCTCTGTGAGGTTTGAGCTGGACATCGAACCGCGACTGAAGCCTTTGGTGACGACTGGCGCCCTGGGCTCAGGCTCGAACGACACCCAGGACCTCTCCTTCAGCCAGGCTCCCTCTAAAGTGTGGCCTCAAGAGGAATACATAGTGGAGTATTCCCTGGAGTATGGTTTTCTGCGGCTGTCTCAAACCACACGACAACGTCTTAACATTCCTGTCATGGTGGTTACCCTGGaccCAGTAAAGGACCAGTGCTTTGGAGATGGATTTAGCCGCTTCCTCTTGGACGAGTTCCTTGGCTATGATGACATACTGATGTCCAGTGTTAAGGCTTTAgcagaaaatgaggaaaataaagGATTCTTGAGGAATGTGGTATCAGGAGAACACTACCGTTTTGTTAGTATGTGGATGGCACGTACTTCCTACCTGGCTGCCTTTGTAATCATGGTGATTTTTACACTCTCTGTGTCCATGCTGCTCCGCTATTCCCACCACCAGATCTTTGTTTTCATAGTGGACCTCCTGCAGATGCTAGAGATGAACATGACCATTGCATTCCCGGCTGCTCCTCTTCTCACTGTAATCCTGGCTCTTGTGGGAATGGAAGCCATCATGTCTGAGTTTTTCAATGACACAACTACAGCATTCTATATCATTCTCATCGTGTGGCTGGCGGATCAGTACGACGCCATCTGCTGCCACACCAACACAAGCAAGCGCCATTGGCTCAGgtTCTTTTATCTGTACCATTTTGCGTTCTACGCATACCATTACCGCTTTAATGGGCAGTATAGCAGCCTGGCTCTTGTCACTTCTTGGCTCTTCATTCAGCACTCCATGATCTACTTTTTCCATCACTATGAGCTGCCCGCCATTCTGCAGCAGATCCGCATCCAGGAAATGCTGCTGCAGAACCAGCAGGCTGCTCAGGGCAACCAGACAGCGCTGCAGGACAACTTgaacaacaacaccaccaccaatgCTGTGGCACATGCTGGCAGGCCAACTGCAGCCAGCTCAGTCACTGCCAATGGCCAGGAGCGCCAGTCAACCCTGGCCCAGCCACAGGCTGAAACTTCTAATGGCCTGCCTACTCCTGCACCAAGTGATCAGGACTGGATGTCCGAGACGGCAGCCATCATCACAGATGCCATCATCACGGAGGCACTTTCAGCCCCACTACTGGAGACTACAGCATCCACTGCAGGCATCAGTGTCGCACAGAGTGCAGCTATGGCAGGAGAGAATCAGCAGGGGAGCGAAAGATCAGCTGGACCCCAAGAAGGGGGAGGGAATGATGAGGCAGGAGCAACTCCTCACATCACAGACTGCAGAGAGGCAGAGGTGGACAAAACAGACATGCGTCAATGGGACGCCAGAAAAGAGAGCGAGAGTCACACTGAGCCAGCCACACCCGGCCCTCACACCGCCCCCTCCTGAGCTCAGCTCTCACTCGGGTTCAATTCCAAACCCCATAATTCCGCCTTTTTACTTCTTCAACTAGCAGCAGCAGAGCTTTTCACCCTAAATGCATCCGTAAAGTGTCAAGGAGGAAGAAGAGCACCAACAGCGATGGAGCGCAATGTAATCACACCCTGAAAAGGGGTGGGGggagtaaatgttttcttttcttaaggACTTGAAGTGAAAATGGATGctttttgaattattttgaaaatacacCACATGTGGGGTGTGATCATTCAGAGAGtaactgtgtgtttcttttctttttcttttctttttcttttttttttttttttaaaagatgattgattagtgattggtttcTTTAAACACTGGGTGTGTTTGTATACAATAATGTGTTTAACAATGATAGTACTTCTGATGGCATATTGGCAGTCATTTGGAGCTCAGCATCGACCTGTGTTATCTAAAGGAGCATCTAGTCTTTATTGTATCCGATGATTCAAGCCAAGCAGCGGTTAATCTTTTGATTAGATTTGAGTTTTTGAGGTGTAAGGTTCTTATGCAGTAGCAGACGACCCAGTGTAATGTTGAAACCAAGCTCTCACCTGGAAAGTAGTCTACCTTGTGAAAGTATAGTCTTAGTCCATGATGCCTTGaaaatttgttgtattttaagtGATTTTTGAAGACTACACTTAGGTGTCAAGGACTGATTTTTGAACTCCTTTCTTAAGGAAAAAAATCCTGTTTGGGACAGATTGCTGATCTTTACAATTACTGCACTAATTTCTTTATGAAACAGGTAAGCTCAGTCTGTTTTTGTGCAATTCCAAGAAGATCTATAAAGGTGCCCCAGTGAATCCTGTCTGGTTAGAGAGCAAGTCTCGTAATTTTCTTGAGAGTTCCTCTTTATTTAGGGGTACAGATATTTTGTTAAGGCTATTAATTCCTTCAGCTTTGGGCCTTCAGTTCAGGGTGTTTCATTTGCTGGCTTTGAGATTGGTTGCCTTTAGCATGTAGTACTATGAACCTGTTTAATAGTGCTATAAGGTTATACCATAGCTCTAAAGCCTTCTCAGAGTGAACGTCTTATTAATGTGCTTGATCATTTTTGTTGCGCTTTGCTTATGTGTATGTATTAATTGCATTATAAAAAGCAGCCATACAAATGGgtacattttttcccaaaacccATATTACAAAAGATATTATTTCTCCATCAAATAGTAACTCTCATGGAATGTAGGAGTACAAAAATAGCAAAACATTTTTGATACTCCCATGGGTACTGCAAGGCATACCAAGACAGAGTTCAATGTTTAACAGTAATCAAGACACAATGGGTGTCACAGAAGAGCAGGAGAACATTATTTAACTGCCATTCAAAATGTATGCAAAATGAGTCAGTCATTATGCTAGTaccagtaagaaaaaaaaaaaaacaagcatcgTAAAAGCtcagtgaatattttatgtGCAAATAGatcaaaaagctttttaaaagtgAGTGAAACAGAATTAAGAGTTGTATGCTTTATAGATCATGCCTAGAGGGACAGATAaagccaattaaaaaaaaaaaatcttgctttTACAAGTTGAGTTAATTGACTACAACGAACTTTATTCTGTCAAATAGATTAAGCTTAACGTGTCACAGATTGTCTCTACTCTTTGGATGAGAGAAGACTGGAGGAAACTGTGCAATTTCTTTGGCAGGGTTTCATTCaaaggctatgcaacaaatgaCAAGGTAAACGTCAGCGGCTCTGGGAAGATGGTTTTATCCAAAACGTGTGCAATAAGTCAAGTCAGTTTGAGAGAGATTTTCAGCATGAGTGCTCCGCAGATGAGCTTTTATGAtcgaatttcttttttttttttttttttttttttttcctgtgcctATTTGCCGTTCTGTGTCAGAATGCAGGATGATGAGTTTCTATCCATTCATCATAGACGATGAAAATCCACAGTTCTGTGATGAACTCAATTTGCTCTTTCATTCAgttgtatttaaatgtaaaaacgaAATGCATAAACAGACAAAAGGATTTTCCACTC

Function

symbol description
tmem259 Predicted to be involved in positive regulation of ERAD pathway and response to endoplasmic reticulum stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human TMEM259 (transmembrane protein 259).

NR:

description
membralin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919781.2 True 4865 mRNA 0.44 12 20548259 20563932

Neighbor

gene id symbol gene type direction distance location
slc1a8a slc1a8a,LOC108271187,LOC108437258,LOC104955947 coding upstream 367017 20171890 ~ 20181242 (+)
LOC113530255 slc39a3,LOC106613601,LOC106573935 coding upstream 377851 20163215 ~ 20170408 (+)
sgta sgta,LOC107656077 coding upstream 385214 20153984 ~ 20163045 (+)
zgc:113223 LOC108271437,LOC108437285,LOC103041228 coding upstream 427663 20105710 ~ 20120596 (+)
apc2 apc2 coding upstream 445207 20076613 ~ 20103052 (+)
sid1 NA coding downstream 152599 20716531 ~ 20717902 (+)
si:ch211-1a19.2 NA coding downstream 155499 20719431 ~ 20721806 (+)
mast3b mast3 coding downstream 242399 20806331 ~ 20839589 (+)
LOC113530200 LOC108270822,LOC108438687 coding downstream 317603 20881535 ~ 20887344 (+)
elovl1b LOC108270818,LOC108438650,LOC107656106,LOC107753833,LOC107665848,LOC107562086,LOC107723066 coding downstream 368810 20932742 ~ 20947791 (+)
G185063 NA non-coding upstream 41579 20506477 ~ 20506680 (+)
G185037 ptbp1b,LOC107753809,LOC107593132,LOC107674525,LOC107723850 non-coding upstream 111672 20435795 ~ 20436587 (+)
G185042 NA non-coding upstream 116921 20431129 ~ 20431338 (+)
G184987 NA non-coding upstream 227355 20265708 ~ 20320904 (+)
LOC117598445 NA non-coding upstream 253885 20266599 ~ 20294374 (+)
G185182 NA non-coding downstream 4144 20568076 ~ 20568292 (+)
G185206 NA non-coding downstream 142062 20705994 ~ 20708027 (+)
G185330 LOC101478692 non-coding downstream 326315 20890247 ~ 20896461 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding downstream 400603 20964535 ~ 20967901 (+)
G185418 NA non-coding downstream 438896 21002828 ~ 21024560 (+)
G184979 NA other upstream 397365 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 676796 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 703021 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 713845 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 847985 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 625316 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 688213 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 1394956 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1748510 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3643944 24207876 ~ 24210763 (+)

Expression


Co-expression Network