LOC113530200 (LOC108270822,LOC108438687)


Basic Information

Item Value
gene id LOC113530200
gene name LOC108270822,LOC108438687
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20881535 ~ 20887344 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920038.2
GCTGAACGCCTGCAAGTCCTGACCACGTGACAAGTAGCTCCGCGCTGATTGGCTGTAGAAGCTGGGCTCTGCCTACGGTTCAGTGCTCCGGTGTGTGCTGCTGTGAAGGCTTTCACTTGCGCATCTGAAGACAAAGCAGCCATGTGGATGTACTTATTGGCTTTGGTGGTCCTGTACTATGTGGTGCGCTGGTTCCGTGAGCTGGAGAGAGTTCCAGACAGAGGGAGTAAGTACGTTTATATCACTGGCTGCGACTCCGGCTTCGGGAACCTTCTAGCACGCCATCTGGACAAGTGTGGATTCTGTGTGGTGGCAGCATGTTTTACAGAAAAGGGTGAAGAGGAACTGAAAAAATCCTGCTCAAGCAGAATGTCAACAGTCCATCTGGATGTCAGAAAGCAGGAAAGCATTGAAAAGGCTGCAGCCTTCATCAAGGAGCTAGTGGGGCAGAAAGGTCTGTGGGCCGTGGTCAATAACGCGGGGGTCTCTATTCCCTCGGGTCCCTGTGACTGGTTGACCCTGGAAGACTACAAGTCCATGCTGGCTGTCAATCTTGATGGAGTCATTGGTGTGACCCTGAGTGTCCTTCCTCTCATTAAGAAAGCCAGGGGACGTGTGGTTAACGTGGCCAGTGTGTTTGGCAGGATCACGCCAGTTGGAGGACCCTATTGTGTGTCCAAATATGGTGTGGAATCATTTAATGACAGCCTCAGGATATGTATGCACCCATTTGGAGTGAAAGTCCTGTGTATTGAGCCAGGTTTCTTTAAGACCAGTGTGACGGACACTGATTTGCTAATCAGAAATGTTAAAATGCTCTGGGAAAGATTGCCAAAGGAGACAAAAGATGACTATGGAGACAATTACCTAAGCGAAGTGGAAACAATGATGAAAAAGAAGCTATCCAAGATGCCAGATGGTGACTTGATGAAGGTTGTGAGCTGTATGGAGCATGCCGTCTCAGCCGTGCGCCCTCGCACCCGTTACTCCCCTGGCTGGGATGCTAAATTTTTCTGGCTGCCGCTGTCTTATGCCCCGACCTGTATTTCTGACTATGTGCTACTTAGAGAAATCATCAAACCTGCCAAAATGGTGAATTAGACTGATGCGCTAAGCTACAATAAAGTCCAATATTTAGACAATGAcatgtttgtttagttttgtactctagcagggatggacaaatcagtagcctgggcACCCGGGACACACAGATTTCTATTTCTATcactattagttttttatttgtggTTACGTAGGGGCCAAGTAGATTTAACaaccagaaaaataaaaataaacatacttCCTATTGAAAACATAATTCCGTCTTCCTATTGAGAAGTTTTCATTTGATATGTAGATGCAACATACCTCAATACTGAATCTTACTGCCTGTTGCAGTACATAACCAAGGATCAGGTATTTACTAAACAGACaggtacaatggatataaaacgTCTACACACCCTGATAAAATGGctttttgtgattaaaaaaaaaaaaatgaaaccagtgAAATCATGTTAGAactttccaccctcaatg
>XM_026920046.2
gagCTGAAGACAAATAGCCATGTGCATTAAATCAGAGCATTTACATCTACAGGCTAAAGAACAGCTTCTGGAAATAAGCCATGTGGATGTACTTATTGGCTTTGGTGGTCCTGTACTATGTGGTGCGCTGGTTCCGTGAGCTGGAGAGAGTTCCAGACAGAGGGAGTAAGTACGTTTATATCACTGGCTGCGACTCCGGCTTCGGGAACCTTCTAGCACGCCATCTGGACAAGTGTGGATTCTGTGTGGTGGCAGCATGTTTTACAGAAAAGGGTGAAGAGGAACTGAAAAAATCCTGCTCAAGCAGAATGTCAACAGTCCATCTGGATGTCAGAAAGCAGGAAAGCATTGAAAAGGCTGCAGCCTTCATCAAGGAGCTAGTGGGGCAGAAAGGTCTGTGGGCCGTGGTCAATAACGCGGGGGTCTCTATTCCCTCGGGTCCCTGTGACTGGTTGACCCTGGAAGACTACAAGTCCATGCTGGCTGTCAATCTTGATGGAGTCATTGGTGTGACCCTGAGTGTCCTTCCTCTCATTAAGAAAGCCAGGGGACGTGTGGTTAACGTGGCCAGTGTGTTTGGCAGGATCACGCCAGTTGGAGGACCCTATTGTGTGTCCAAATATGGTGTGGAATCATTTAATGACAGCCTCAGGATATGTATGCACCCATTTGGAGTGAAAGTCCTGTGTATTGAGCCAGGTTTCTTTAAGACCAGTGTGACGGACACTGATTTGCTAATCAGAAATGTTAAAATGCTCTGGGAAAGATTGCCAAAGGAGACAAAAGATGACTATGGAGACAATTACCTAAGCGAAGTGGAAACAATGATGAAAAAGAAGCTATCCAAGATGCCAGATGGTGACTTGATGAAGGTTGTGAGCTGTATGGAGCATGCCGTCTCAGCCGTGCGCCCTCGCACCCGTTACTCCCCTGGCTGGGATGCTAAATTTTTCTGGCTGCCGCTGTCTTATGCCCCGACCTGTATTTCTGACTATGTGCTACTTAGAGAAATCATCAAACCTGCCAAAATGGTGAATTAGACTGATGCGCTAAGCTACAATAAAGTCCAATATTTAGACAATGAcatgtttgtttagttttgtactctagcagggatggacaaatcagtagcctgggcACCCGGGACACACAGATTTCTATTTCTATcactattagttttttatttgtggTTACGTAGGGGCCAAGTAGATTTAACaaccagaaaaataaaaataaacatacttCCTATTGAAAACATAATTCCGTCTTCCTATTGAGAAGTTTTCATTTGATATGTAGATGCAACATACCTCAATACTGAATCTTACTGCCTGTTGCAGTACATAACCAAGGATCAGGTATTTACTAAACAGACaggtacaatggatataaaacgTCTACACACCCTGATAAAATGGctttttgtgattaaaaaaaaaaaaatgaaaccagtgAAATCATGTTAGAactttccaccctcaatg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K13369 HSD17B6; 17beta-estradiol 17-dehydrogenase / all-trans-retinol dehydrogenase (NAD+) / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920038.2 True 1545 mRNA 0.45 5 20881535 20887344
XM_026920046.2 False 1484 mRNA 0.44 5 20882591 20887344

Neighbor

gene id symbol gene type direction distance location
mast3b mast3 coding upstream 41946 20806331 ~ 20839589 (+)
si:ch211-1a19.2 NA coding upstream 159729 20719431 ~ 20721806 (+)
sid1 NA coding upstream 163633 20716531 ~ 20717902 (+)
tmem259 tmem259,LOC106613615 coding upstream 317603 20548259 ~ 20563932 (+)
slc1a8a slc1a8a,LOC108271187,LOC108437258,LOC104955947 coding upstream 700293 20171890 ~ 20181242 (+)
elovl1b LOC108270818,LOC108438650,LOC107656106,LOC107753833,LOC107665848,LOC107562086,LOC107723066 coding downstream 45398 20932742 ~ 20947791 (+)
chrna4b chrna4,LOC105906770,LOC103467111,LOC106941279 coding downstream 81391 20968735 ~ 20989421 (+)
hcn5 LOC108270784,LOC103027332,LOC107658208,LOC107712254,LOC107724451,LOC107668864,LOC107569239,LOC107597416 coding downstream 142050 21029394 ~ 21036574 (+)
txlng txlng,LOC107723067,LOC107665847 coding downstream 155956 21043300 ~ 21050473 (+)
zrsr2 zrsr2,LOC107729896,LOC107602790,LOC107753840 coding downstream 176073 21063417 ~ 21070097 (+)
G185206 NA non-coding upstream 173508 20705994 ~ 20708027 (+)
G185182 NA non-coding upstream 313243 20568076 ~ 20568292 (+)
G185092 NA non-coding upstream 326411 20554856 ~ 20555124 (+)
G185063 NA non-coding upstream 374855 20506477 ~ 20506680 (+)
G185037 ptbp1b,LOC107753809,LOC107593132,LOC107674525,LOC107723850 non-coding upstream 444948 20435795 ~ 20436587 (+)
G185330 LOC101478692 non-coding downstream 2903 20890247 ~ 20896461 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding downstream 77191 20964535 ~ 20967901 (+)
G185418 NA non-coding downstream 115484 21002828 ~ 21024560 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding downstream 171720 21059064 ~ 21060228 (+)
G185439 NA non-coding downstream 189831 21077175 ~ 21339714 (+)
G184979 NA other upstream 730641 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1010072 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1036297 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 1047121 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 1181261 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 301904 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 364801 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 1071544 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1425098 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3320532 24207876 ~ 24210763 (+)

Expression


Co-expression Network