LOC113530255 (slc39a3,LOC106613601,LOC106573935)


Basic Information

Item Value
gene id LOC113530255
gene name slc39a3,LOC106613601,LOC106573935
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20163215 ~ 20170408 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920083.2
TGTACACTGTTGATATGGAAATTAAATGTCAGATTTCAAGTAGGATATGATTGTTGTGATCCACTGGTATCCACAGGAGTAGGAAAATCTTTGCCAAATGTCATGCtgtgatctttttttatttgtttattttttattttatttaaaagactgGACATTTTGCATTAAATGTTCACTCCAAATAACATATAACAGGATGGGATAATCAGGGAGGACAAGGAAGTGTTAATATTCCACCAATCTCTCTCAAATACGTTCAACAAGGTAGGCTGGGTTTTAAAGTTCACTCTACACTACGTGTAGTGGGCTTCATAGGGTGCAGAACAGTGTGGGTCGTGCCTCACGGAGTGCACCTACAGAGGGAGCAGGGAGCCATTTGGCATCCAGCCACACCAGCGAATAGAAACCCGACAGGTGCTCTCGTACTAACGGAGATAGCCGAGAAAAACGCAGTGCTGAAGAGTGTCCGGGTCTGATGGATGGAGGAGGCTGTTCATGCTCACGCCATGCTGTTACTGTGCTGCTAATCTGAATCAGCAACATGGAGATGGTTGTAGCTAAAATCCTGTGCCTTCTGGGCATGTTTGGCCTCATGCTGAGCGCTATTCTTCTCCCTGTGCGGGTGATGCAGTCGGACCTGGACAAGGCTGTGCGCTACAGGAAGGCGGTGGCGTTCAGTAACTCATTCGGAGGCGGTGTGTTTCTGGCCACCTGCTTCAATGCGCTTCTGCCTGCTGTTCGAGACAAGGTGGAGCAGATCCTAAACCTGCTGAAGATCACCACCGACTACCCACTGGCCGAGACCATGATGATGCTTGGCTTTTTCCTCACTGTGTTTGTCGAGCAGGCTGTGCTGACCTTCAGGAAGGAGAAACCACCCTTCATCGACCTTGAGACCTTTAATGCCGGCGGCTCGGAGGCAGGCAGCGACTCTGAGTATGACACGCCGTTCATCGCTCCAGCACGGAGCTCGCATCATCACTCGCATAATCACTCTCATCACCACGGCCATTTCAACCCTGCAGAACTAACACGAGCAGGACCACTGCGGCTTGCAAGCCTCGTCCTGGCCCTCTCCGCTCACTCAGTCTTCGAAGGCCTTGCTCTTGGGCTTCAGGAAGATGGTGCTAAATTAGGAAGCCTTTTCCTCGGAGTGGCGATTCACGAGACCCTCGCAGCCATGGCTTTAGGGGTCAGTGTGGCTAAAGCAGGACTGCAGCTTCGGGATGCCAGCAAGCTGGGCATCACGGTCAGCCTCATGATCCCCATCGGCATTGGCCTTGGAATGGGTATCGAGAGCGCCCAGAACCTGGCAGGAAGTATTATTTCTGTGGTGCTCCAAGGCTTGGCAGCAggcacatttctttttattactttctttGAAATTCTCTCCCGAGAACTGGAGGACAAACATGATCGGCTCCTGAAGGTGCTTTTCCTCGTCTTAGGGTATGGTATACTGGCAGGTCTAGTCTTTATCAAGTGGTGATAGATCTCAGCTGTTCCCAGAGCGAATGATCTACAGCAGGTTTCGCTTTTTGGAATAGTTAACCCTCCTCATTGCCATAACCAAAGGGCCAGAGTTTTCTGAATATATTCTAAAAAGACTTTTCTTAACTTGTTACTTCCTATTCCTAAATTTCTGTACCTATGAAATCATACACTGGATATACAGAAACAGTAGCATATTAGATGCAGAAAAGCGTTTTAACTGTAGTGAAGTGATTTATTACTGTGAACGTTGTTGGACGGGTGCTACTGcagattttaaatgttatatgttattGATTCATTTGATGCTAGATGACTTTGTGATAAACATTGGAGATACAGTCCccgttttatttgttttatacctGATTAAAAGGTTAGCTTCAGAGACAGATATTCCTTGTATTCCTTGCAAGAGTTGATCTTACAGGCTacagcaggggttctcaaatgTTTTGCAGCCAGCGAttcatttaactttaaaataaatttcattgaCTCCCTCAACAGAGATTTATGAATAGTTCAAcgattcaaatattaggctaattgtttaaattttgtaaaatattagaCTCAATATTTAAACATGGGGTTTAAATTCGGGGTATTTATTTGCGCCATAAAgctttttgttctttaaatTTCCATGAACaaaacacattaggtccaagttgatATTGTGTATAGGcctgcttgtttttgagttacccattcaaatcaaatcaatataTAAATACTGTGCTTCACGGACCCCACTCTGAGACTCATGAGTCTATAGGCATATTGCACAGGTGTAGGAAAACTCAATGCTGGAGAGGTTACCTGGAAGTTTAATTGAAGTAGGTGCTGTAATGCAGTTTCACGTTGttactttacatttttgtaCATCTTTGTGGTTGTGCTCTTATATTTATAAAGGAATCTGTTTTGGTTTAAGACCCTGTAATTTGACATGCAGATTATTTGCATCTGataaatgcaaatttatttCACCTGACAAATGCAATGTAATACAATATTTGTCTAGTACATTCATAGAAAAAGGGGTCATTAAGAGTTCTTTGGATCATAAGCTTTCTAAAGGGAAACCTTCTGTTGTAGGCTTTTATGTAGAACTATTACAGGGTTTCCATAAAACGTTAGACTGAAGAACTGTCTGCAAAAAATATCAGATTAAATATGGCTTATAGATGAGAACAGCTGTAACAAGACtatttggcatttttatttgtttcaacaAAACTGTGAGGAACTTAAAATTTAACATGTTACTCTACTGAGTTTCTCCTCTAGGGCTAATCTAATAATTATTCCTTTTGACTATAACAATTACCAGATTGAAATTTGAAGATTTAAAGACATCTTTCTCTTTACGTCTTTGTCTAATCTCTACTAGATGTTTCCTCCTCATTCATCTTAACAAGCTAAAATTAAACAGTGAAACGTACCTGGCCTCATTAAACTATGAAGTTGTTGCATATATTTTATGACCACattggggtaaaaaaaaatcaagcccCTTTCATGAAATACAACACGAGGCTGTAACGTCAACAGTTAAGTATACTTCTTGCCAAGCAGTTCTCAGCCGCTTTGGTTGTTAATGTTTGTGCATCTCATCAGTGTGTTGCCATGAAGGACATCTCCGCATTACACAGGCCATATTGTACGTTTACTGTTTTTAACatgaaaatgtcagtgtttttacatattgctttttttttttttattattatttctctgttGTTGCCGCCAAGTCTCGCCTGTCTGCAAGAGAGATAGTTACACTGCTTTTTCagtcagtctgttttttttttctttcttcttctaaaACTGCAACAACAGTTTTGGGCCTAAAAACTGTTTTGTGCACAGTGCTATGTGGTGCAGTTGTAGCAGCGCTGCTGCTGCCCCCAGAGGCTTCTCTATGGTATTACATTTTACCCAGGAATAGATGCCTATATTTCTGTTATTGCTTAAGTCAGATATAAAAAATCTACTTTGATAATTGttcataatttaaattattgattGTTAAATAATCATTGCAGCCCTAATTAGATATGCTAGATGGAACCTTTTTCCTAAGATTGTACATGCATCAAACTTTTTTCCCGATGCAAAGGTTTTACCTGGGTTTTCCCAAGAATACCATAAATATACATGTTATCTAAATCATTTTAGCAGCATATTAACCTCATGCAGTATGCAGTGTTATTGACAGTATGAATTCCATGTCACAGCAGGGATATGTTCACGGTAAAGGTATATTTACTTAATGTTGCTCAGCATAAAAATGGAACAAGTGTTTGTAATAGTTGATTAGAAAGCTGAGAATTACAGGAATGGTTTGTTTCAAGTAGCTGAAGCACATGACTATAATGCTGGTGGTAGGTATGTCACTGTAAATgaagtgtatgtatgtgagtgtaATCAGTGTAAATTATAATGCTAAGATTAATGCCTTAAAAGACACtcaataaattttaatatattttc

Function

symbol description
slc39a3 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within response to zinc ion. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SLC39A3 (solute carrier family 39 member 3).

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG:

id description
K14709 SLC39A1_2_3, ZIP1_2_3; solute carrier family 39 (zinc transporter), member 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920083.2 True 3993 mRNA 0.40 3 20163215 20170408

Neighbor

gene id symbol gene type direction distance location
sgta sgta,LOC107656077 coding upstream 170 20153984 ~ 20163045 (+)
zgc:113223 LOC108271437,LOC108437285,LOC103041228 coding upstream 42619 20105710 ~ 20120596 (+)
apc2 apc2 coding upstream 60163 20076613 ~ 20103052 (+)
gadd45ba gadd45b,LOC107553537,LOC107597151,LOC107757925 coding upstream 191868 19969557 ~ 19971347 (+)
LOC113535596 vmac,LOC107680554 coding upstream 198658 19959701 ~ 19964557 (+)
slc1a8a slc1a8a,LOC108271187,LOC108437258,LOC104955947 coding downstream 1482 20171890 ~ 20181242 (+)
tmem259 tmem259,LOC106613615 coding downstream 377851 20548259 ~ 20563932 (+)
sid1 NA coding downstream 546123 20716531 ~ 20717902 (+)
si:ch211-1a19.2 NA coding downstream 549023 20719431 ~ 20721806 (+)
mast3b mast3 coding downstream 635923 20806331 ~ 20839589 (+)
G184900 ndufa11 non-coding upstream 208175 19954594 ~ 19955040 (+)
G184882 NA non-coding upstream 215732 19921471 ~ 19947483 (+)
G184823 NA non-coding upstream 353961 19808713 ~ 19809254 (+)
G184718 NA non-coding upstream 458965 19703635 ~ 19704250 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding upstream 498724 19661092 ~ 19664491 (+)
G184988 NA non-coding downstream 94528 20264936 ~ 20265620 (+)
G184987 NA non-coding downstream 95300 20265708 ~ 20320904 (+)
LOC117598445 NA non-coding downstream 96191 20266599 ~ 20294374 (+)
G185042 NA non-coding downstream 260721 20431129 ~ 20431338 (+)
G185037 ptbp1b,LOC107753809,LOC107593132,LOC107674525,LOC107723850 non-coding downstream 265387 20435795 ~ 20436587 (+)
G184979 NA other upstream 12321 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 291752 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 317977 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 328801 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 462941 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 1018840 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 1081737 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 1788480 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 2142034 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 4037468 24207876 ~ 24210763 (+)

Expression


Co-expression Network