sgta (sgta,LOC107656077)


Basic Information

Item Value
gene id sgta
gene name sgta,LOC107656077
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20153984 ~ 20163045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920096.2
gaagaaggagaaaaggatGACGAGTGCGATGACGTATCTCTGAAGAGGGGCGGGGCTACGTGCGGCAGGGTTAGCTCGCGCAGCAGCGGACAGCAGCTCGTGATAGTGGGACGTTATTATCCCCATAAATACCCGGAGAGGTCCTAACCTCCAACCAACAATGACAGATACAAAGCGTCTCGCTTACTCCATTATCCAGTTCCTCCACAACCAGCTCACATCTGGAGGCTTGTCATCAGATGCTCAAGAAAGTTTAGAAGTTGCCATCCAGTGTCTGGAGACTGCGTTTGGGATCTCAACCGAGGACCAGAGTTTAGCAGTTTGTCAGACCTTGCCAGAATTATTCGCAGCGGCAACTGTCAAGGTAGCAGAAACGCCTCAGGTTAAAGTCACCTCAGCCAATAGTTCCCCTACAGAGGATCAGCTAGCAGAGGCAGAACAACTAAAAAGTGATGgTAATGACCAAATGAAGGTGGAAAACTTCAGTGCAGCGGTGGAATTCTACTCAAAAGCCATTCAGATTAATCCACAGAATGCAGTTTACTACTGCAACAGAGCCGCGGCATACAGCAAACTTGGTAACTACGCTGGAGCAGTTCAAGATTGTGAGTGTGCAATCGGAATTGATCCAAACTACAGTAAAGCGTATGGACGCATGGGGCTGGCGCTGTCAAGTTTGAACAAACACAACGAGGCTGTAGGCTACTACAAGAAAGCCCTGGAACTCGACCCTGAGAACGAAACGTATAAATCAAATTTGAAAATTGCTgagcagaaaatgaaagaaacaccAAGCCCAACAGGTGGGATGGGTGGCGTTGACCTTGCTGGTTTGCTCAGTAATCCCGGTTTCATGAGCATGgcttctAATCTGATGAATAACCCACAAGTACAACAACTGGTATCAGGAATGATGTCTGGATCTTATGGGCCTATGGGTGGCACTGCAGCCCCAACCACAGGGCCTCCGAACGACATATCAGGCCTTATTCAAGCTGGCCAGCAGTTTGCACAGCAAATGCAGCAGCAGAATCCTGAGCTCATCGAGCAGTTAAGAAGTCAAATCCGGAGCCGGCCCCCTAGTGCAAGTAACGAAGAACAATGACACATGAAGCAGTAAAGAATCATTGTGAGGGACACAGAAGACTGGCtcgctttttctttttatcttctttttaaGATCTATTGTATCTACTACTCCAGGGACTAAACCAATTTGACATCAGAAGGAGCGCATGTGTGTCCAGCCGTCCTCCTCCCTGCATTGCCTGTCTTTGAAGAAACCAATGTAGCCAAAATTTTTAGGTCATATCTGGCCACCtagatgctaaaaaaaaaaaaaaaaaaaa

Function

symbol description
sgta Predicted to enable molecular adaptor activity. Predicted to be involved in positive regulation of chaperone-mediated protein folding; posttranslational protein targeting to endoplasmic reticulum membrane; and ubiquitin-dependent ERAD pathway. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTA (small glutamine rich tetratricopeptide repeat co-chaperone alpha).

NR:

description
PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like

GO: NA

KEGG:

id description
K16365 SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920096.2 True 1349 mRNA 0.47 12 20153984 20163045

Neighbor

gene id symbol gene type direction distance location
zgc:113223 LOC108271437,LOC108437285,LOC103041228 coding upstream 33388 20105710 ~ 20120596 (+)
apc2 apc2 coding upstream 50932 20076613 ~ 20103052 (+)
gadd45ba gadd45b,LOC107553537,LOC107597151,LOC107757925 coding upstream 182637 19969557 ~ 19971347 (+)
LOC113535596 vmac,LOC107680554 coding upstream 189427 19959701 ~ 19964557 (+)
ctns ctns coding upstream 242775 19904158 ~ 19911209 (+)
LOC113530255 slc39a3,LOC106613601,LOC106573935 coding downstream 170 20163215 ~ 20170408 (+)
slc1a8a slc1a8a,LOC108271187,LOC108437258,LOC104955947 coding downstream 8845 20171890 ~ 20181242 (+)
tmem259 tmem259,LOC106613615 coding downstream 385214 20548259 ~ 20563932 (+)
sid1 NA coding downstream 553486 20716531 ~ 20717902 (+)
si:ch211-1a19.2 NA coding downstream 556386 20719431 ~ 20721806 (+)
G184900 ndufa11 non-coding upstream 198944 19954594 ~ 19955040 (+)
G184882 NA non-coding upstream 206501 19921471 ~ 19947483 (+)
G184823 NA non-coding upstream 344730 19808713 ~ 19809254 (+)
G184718 NA non-coding upstream 449734 19703635 ~ 19704250 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding upstream 489493 19661092 ~ 19664491 (+)
G184988 NA non-coding downstream 101891 20264936 ~ 20265620 (+)
G184987 NA non-coding downstream 102663 20265708 ~ 20320904 (+)
LOC117598445 NA non-coding downstream 103554 20266599 ~ 20294374 (+)
G185042 NA non-coding downstream 268084 20431129 ~ 20431338 (+)
G185037 ptbp1b,LOC107753809,LOC107593132,LOC107674525,LOC107723850 non-coding downstream 272750 20435795 ~ 20436587 (+)
G184979 NA other upstream 3090 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 282521 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 308746 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 319570 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 453710 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 1026203 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 1089100 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 1795843 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 2149397 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 4044831 24207876 ~ 24210763 (+)

Expression


Co-expression Network