pdzk1ip1


Basic Information

Item Value
gene id pdzk1ip1
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14708927 ~ 14711727 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920401.2
ATGACTCTCCTGGTCAGTCTGAGGCACTGACAATAGAACGCTATCGCATGTAATTGGTGTATCATGTTATAGACCATAACTATTGATTTAACACTTCATTTCATTCTGTAGTATTATTTCAGAAAAGATCTAAAATGGGAAAAGCTGTCCAAGTGCTTTACTGCCTGTTGCTGATGCTGGGCATTGTAACAGCACAAGCAGGGGGTGTTGAGCGAGCTCTACCAAACTGGCTCACTGGCATCATCGCTGTTGCTGTGTTTCTCTTCCTGGTCTTTATTGCCTTCCTTGTCAACAAAGCCTGGTGTGAGGACTCAAGCCAGGCAGAAAACGTCAGCGTAACAGCCAACGAATATGCCATGACCAATGGGTCAAACACAAATCTTGATTCAGTCAGGAGTGATGAGCACTACGATGCTTATGAGAATGTGATTTTTCACAAATCTGAAGAAAACGTGACAGCCATGTGAATCTGGGAAAATGGTTGACAGTCCATGCAGTGTGGCATCCATTTAAACCAGACGTAATCCACCGatgttaaacatttcattaatgtttctcttgcacttttatacacttacacacatttatgtatatacacatatgggacaatttcaaataaatttgttaCCAGTCATCACACTATATGCTAATGGGATCAGTAGGCTGAATAACCATAAGCAAAGGTTAAACACATGAACGCATTTATATGAATGTaaattgattttattcattatttctctGTAGAACTGGAATTGAATGCAAGCTGCTGAAATCCTGACTCATTTACAGATACTACACTGGCTAGTACAGCCATATAGATTCCTGAATTGCTCCTAggagaaatatgaaaaaacCTGACATTCCGCACCAAATCATAGGAACCCTTGCCTGCTTAatgttctcaaaacagtgaacatAGCTACAAAAATTCAGTCATTCTTTAGCATTTTCTACAAAACTAATAATGTCAAATGTTCAAATGATGTAATGTGTTTTAGAGCAGAGATTCTCAACTACAGTCCTGCACGGTTCTAAGGTTTACCTGATACCAAAACACCTGATCTGACTTACAAGTGTGACTGACAAGTGTTTAATATGAGGTAGATCAAACATCTTTACAGTTAGTATTAGTTCCtgatatcacttacattattgcagctttaaacagttgctccctcaacagcatctctttttttatctttcctGAAGCAGTAAGATgaaaatgcagcctgtcattttacagGGAAACTGCCAAGTGCAAACTCCTGTGCTGAAGACTCTACAGtagaagaaaatgtaaagttacagatttacctctgactgttacaaagtgctgacagcGAAGACTCCAAAaacgctaaataaacatctccttatagaaaataattacacatccatttaaatccatttatgtggagcatctgtcaTATAAGTCCctaactgttactatagaaatgataacatataaTAATGAGTGCATTCaaataaaccttgcagccagaactattgtctGAGTCATGTTAGAGAAaacgaatcaacaccttctgaccaatcagaactgaatATTCAACTCCCCTTTGGTATAAATGATGTAAGTGTAAATGAATAAAGCGATTAAGTGGGTAAATGTAGATATCAGGTTTATTAGATCATCTCTCATTATCTAACATAATGAATCTTGACATGGTTTCTTTGGGATTACATGATCATTTCACAAAGACTGACCAATAAACTAAACATTTCCAGTTGAATTAA
>XR_004579090.1
ATGACTCTCCTGGTCAGTCTGAGGCACTGACAATAGAACGCTATCGCATGTAATTGGTGTATCATGTTATAGACCATAACTATTGATTTAACACTTCATTTCATTCTGTAGTATTATTTCAGAAAAGATCTAAAATGGGAAAAGCTGTCCAAGTGCTTTACTGCCTGTTGCTGATGCTGGGCATTGTAACAGCACAAGCAGGGGGTGTTGAGCGAGCTCTACCAAACTGGCTCACTGGCATCATCGCTGTTGCTGTGTTTCTCTTCCTGGTCTTTATTGCCTTCCTTGTCAACAAAGCCTGGTGTGAGGACTCAAGCCAGGCAGAAAACGTCAGCGTAACAGCCAACGAATATGCCATGACCAATGGGTCAAACACAAATCTTGATTCAGTCAGGAGTGATGAGCACTACGATGCTTATGAGAATGTGATTTTTCACAAATCTGAAGAAAACGTGACAGCCATGTGAATCTGGGAAAATGGTTGACAGTCCATGCAGTGTGGCATCCATTTAAACCAGACGTAATCCACCGatgttaaacatttcattaatgtttctcttgcacttttatacacttacacacatttatgtatatacacatatgggacaatttcaaataaatttgttaCCAGTCATCACACTATATGCTAATGGGATCAGTAGGCTGAATAACCATAAGCAAAGGTTAAACACATGAACGCATTTATATGAATGTaaattgattttattcattatttctctGTAGAACTGGAATTGAATGCAAGCTGCTGAAATCCTGACTCATTTACAGATACTACACTGGCTAGTACAGCCATATAGATTCCTGAATTGCTCCTAggagaaatatgaaaaaacCTGACATTCCGCACCAAATCATAGGAACCCTTGCCTGCTTAatgttctcaaaacagtgaacatAGCTACAAAAATTCAGTCATTCTTTAGCATTTTCTACAAAACTAATAATGTCAAATGTTCAAATGATGTAATGTGTTTTAGAGCAGAGATTCTCAACTACAGTCCTGCACGGTTCTAAGGTTTACCTGATACCAAAACACCTGATCTGACTTACAAGTGTGACTGACAAGTGTTTAATATGAGCAGTAAGATgaaaatgcagcctgtcattttacagGGAAACTGCCAAGTGCAAACTCCTGTGCTGAAGACTCTACAGtagaagaaaatgtaaagttacagatttacctctgactgttacaaagtgctgacagcGAAGACTCCAAAaacgctaaataaacatctccttatagaaaataattacacatccatttaaatccatttatgtggagcatctgtcaTATAAGTCCctaactgttactatagaaatgataacatataaTAATGAGTGCATTCaaataaaccttgcagccagaactattgtctGAGTCATGTTAGAGAAaacgaatcaacaccttctgaccaatcagaactgaatATTCAACTCCCCTTTGGTATAAATGATGTAAGTGTAAATGAATAAAGCGATTAAGTGGGTAAATGTAGATATCAGGTTTATTAGATCATCTCTCATTATCTAACATAATGAATCTTGACATGGTTTCTTTGGGATTACATGATCATTTCACAAAGACTGACCAATAAACTAAACATTTCCAGTTGAATTAA

Function

NR:

description
PDZK1-interacting protein 1-like

GO:

id name namespace
GO:0030097 hemopoiesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920401.2 True 1755 mRNA 0.37 4 14708927 14711727
XR_004579090.1 False 1646 misc_RNA 0.37 5 14708927 14711727

Neighbor

gene id symbol gene type direction distance location
tal1 tal1 coding upstream 4839 14696583 ~ 14704088 (+)
ier5 LOC100304758 coding upstream 36197 14670881 ~ 14672730 (+)
LOC113527219 LOC108270689,LOC108429511,LOC107653644,LOC107715111,LOC107588053,LOC103463808,LOC100711005,LOC106955782 coding upstream 97362 14600430 ~ 14611565 (+)
mydgf mydgf,LOC107566370 coding upstream 221115 14481557 ~ 14487812 (+)
mibp mibp,LOC108271439,LOC103035840,LOC108430237,LOC107734093,LOC107702642,LOC107566367,LOC107698603 coding upstream 231176 14473342 ~ 14477751 (+)
tm2d1 tm2d1,LOC107653653,LOC107715116,LOC107669801 coding downstream 126770 14838497 ~ 14849100 (+)
frem1b LOC108271303,LOC108429520,LOC107669836,LOC105904425,LOC107728586,LOC107599441 coding downstream 338455 15050182 ~ 15079767 (+)
atpaf1 atpaf1 coding downstream 369193 15080920 ~ 15085382 (+)
rab3b LOC108270584,LOC108429523,LOC103027359,LOC107653655,LOC107592692,LOC107669838 coding downstream 376513 15088240 ~ 15096387 (+)
nrd1b LOC108271269,LOC108429524,LOC100693897,LOC102784242 coding downstream 387588 15099315 ~ 15114363 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding upstream 43863 14664701 ~ 14665064 (+)
G181300 NA non-coding upstream 270918 14437375 ~ 14438009 (+)
G181252 NA non-coding upstream 298850 14409722 ~ 14410077 (+)
G181236 calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933 non-coding upstream 329454 14375493 ~ 14379473 (+)
G181233 LOC108271251 non-coding upstream 347555 14360788 ~ 14361372 (+)
G181588 NA non-coding downstream 156200 14867927 ~ 14930862 (+)
G181599 NA non-coding downstream 249158 14960885 ~ 14977551 (+)
LOC113533733 NA non-coding downstream 282961 14994688 ~ 15002233 (+)
G181632 NA non-coding downstream 374174 15085901 ~ 15086320 (+)
G181851 NA non-coding downstream 581511 15293238 ~ 15294067 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 59242 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 108948 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 145917 14561555 ~ 14563010 (+)
LOC113531387 ctxn1 other upstream 468386 14222218 ~ 14240541 (+)
G181175 uhrf1 other upstream 534709 14165026 ~ 14174218 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 957071 15668798 ~ 15673982 (+)
LOC113532318 NA other downstream 1543320 16255047 ~ 16256782 (+)
G182819 NA other downstream 1871576 16583303 ~ 16584943 (+)
G182877 NA other downstream 2201531 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 2410172 17121899 ~ 17189315 (+)

Expression


Co-expression Network