chrna4b (chrna4,LOC105906770,LOC103467111,LOC106941279)


Basic Information

Item Value
gene id chrna4b
gene name chrna4,LOC105906770,LOC103467111,LOC106941279
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20968735 ~ 20989421 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920807.2
TAaacttctctcctctcctccagcTCATGTATAATTACGTTTGGTTGTGATGGGAGTGCCTGGAAGGACTGGGCCATCCAAGCAAATGAAGTCTGGTCTGCTGCTTACAGAGCTGCTTGCATTCACAGAACTCCCCAGAGCGCTAAACCTCCACCTATGTTCTGGTCCATGTTTCTGACATGGACTGTGGAATCTCTGTGCCAGCAGGAAAAGACGCTTCAAAACAGCCTTGCGCAGAAGTATGTACACCCATGGGTCAAGAATCTGGTTCCATGTGGCCAGTCGCACAGTCAGCAACAGacataCAAGACCTGACCAACCGGGATGAATCCAGCCAGGAGCGTCCAGCTAATCCTGATCCTCTACCTCCAATGCATCTACGTGTGCACACCTGCCCCGGCTCATGGTCATGCAGAGGAGAGACTACTTCAGGTTTTATTCCGTCGCTATAACAAGCTCTCACGTCCTGTAGAGAACATCTCAGATGTGGTGCTGGTCCACTTCGGCCTTTCCATCGCACAACTCATTGATGTAGATGAAAAGAATCAAATGATGACCACCAATGTTTGGGTGAAACAGGAATGGAGCGATTACAAGCTGCGCTGGAACCCTGAGGAGTTTGAGAATGTCACCTCCATCAGAATCCCCTCCGAGCTCATCTGGAGGCCTGATATTGTGCTCTACAACAATGCTGATGGAGATTTCGCCGTGACCCACCTGACCAAAGCCCAGGTGTTCCACGATGGCAGAGTCAAATGGAAGCCTCCTGCCATATATAAGAGCTCCTGCAGTATTGACGTCACGTTCTTCCCTTTCGATCAGCAGAACTGTAAGATGAAGTTTGGCTCGTGGACGTATGACCGAGCTAAGATCGACTTGGTCAGCATGGACAGCAATGTGGACCAAATGGACTACTGGGAGAGTGGTGAGTGGGTCATCATCAACGCTGTGGGAAAGTACAACAGCAAGAAATATGAGTGCTGCACAGAAATCTACCCAGACATCACATACTACTTCATCATCCGCCGGCTCCCTCTGTTCTACACCATCAATCTGATCATCCCATGCCTGCTGATCTCATGCTTGACCGTGCTTGTGTTCTACCTACCATCGGAGTGTGCTGAGAAGATCACGCTGTGCATATCGGTGctcctctcactcactgtcttcCTGCTGCTCATTACAGAAATCATCCCTTCCACCTCGCTGGTCATCCCACTCATCGGTGAGTACCTGCTCTTCACCATGATCTTTGTCACGCTTTCTATCATCATCACCGTGTTTGTGCTGAACGTGCACCACCGCTCATCCCGCACGCATCGAATGCCTCATTGGGTCCGCCAGCTCTTTCTCCACCTGGTCCCGAGATACCTCTTCATGAAACGTCCACCCGCTGCTGGAAAGAGGAACTGCCGCAAACTCATTGAAATGATGCATAGGCCAATGGCACTGCAGCCCATCCAGCAGGGCAACCCCACCTTGACCATGCCCCTCGATCTGGCCATGGTCTCTGCTAGCTCATCATGTGCAATGCACCGAGAAGCAGCATCCAAATCTCCTCTTTTCTGCAGCTCCCCCAGTAGTCAGTACTCCATCCTTCAAGAGGAGCCCACACACATGAACCTCACTCCTGGACTCACATGCACTCAAGTGAACACTTCCTCTACCTCAAGCCCTTCTTTGTCTCCAGATGCACCCCTTGGGCCTCTGCTTCAAACGTTAGCTCTCAGTGAGGTTTGTGAATTTCAGTGCCACAGTGCTGAGAGTGTATTTGTGGATACCACAGAAGGTACGCATGAGACAGGAACTCTTTGGCACTGTCATAAGCATGAGGAGACAAGTATAAAGACATACGTCACTGCAGATAGAAGTGAAAGTACAGGTTCATGTATAAGACACAAGGTCCGGGGCACTCAAATCTCAAGCCCCAGCTGTAGTAAAGAATCCAAGCTGGAGGAAACTGAGTTTCCAGTGTCACAGTCACTCCTGCGGGCCCTCGAGGGAGTCCAGTACATCGCCGACCATCTCAGAGCTGAGGATTCAGACTTTTCGGTAAGAGAAGACTGGAAAtatgttgccatggtgattgATAGAATATTTCTCTGGATGTTTGTGCTGGTGTGCATTTTGGGTACAGCGGGACTGTTTCTGCCTCCTTGGTTGGCTGGAATGATCTAGAATCTGACACTGAGCTCAGCATTGAACAAGAAACCTGCCAAACACTTTCAGTGTCCTCATCCAGATCCACTGTTTTTGACTGTACAAATATCTGCAATATCATAATATCACATTCCAGAGTGGCCAATGTAACGATGAAGCATTTTTTCAAGGTCAGCTTATATTTCCTTGAAATGCTTTCAAGGCACAAAATGGTTTATTCCTGTCCTTTCAACAAAGGCCAGTTTCTGTTGCAAATAAGCTGCTGTGCCTTCTTCTGAAACTTTCCTTCATTTGTGTATTATTCCCTTTAAATTCACGCTTTAAATCTGTGCCAATTATAACCACATACCTTCATGCCATTTGTTATATATTAAAGGATCTGCTACAAAACTAGatgaataaaattttacatACTGACAGCATAAAAGCAATTCATATTGAAATTTATTTAGAATAATCTAGATATTCACGTGCCATATTtgtactgttgtgtttttcgCAGGGAGGCgtaaataaatgattcaatGGAATAAATTCACTGGGCATCCATGTTACCCTAGAGCTCTATTTGTCATCTCTGTCTAAACAGATTGTGAGAAATAGCCTTCTGCTCTATCTGGTGGTGATTATAGCACAATAGATACTGACAGAATACACCACCAGATTTTGTCCACGTACACACACAATGGCAGGATGTAGAGATAAGCTTCTGTGCCACAGTTCATGCTGTCAGCTAGGAAGCTATAGCTGGATGcctaataatgaaattatatttcaaGAAAATAGTTACATCTTTAATCAAGAACAACAAAGGCTTGAGTTTCTTTCATAATAGTGCAGTCTGTGTTTAGAATCAAATGAGGTAAAACTCACTCACTCTGAAAAACAACAGGAGGGTTCTTCAGTGAAAACTGGTCAATACATCATAATCAAATATACTGACATGATCTTAGGCCAAAGCAAGAGACTTGTAGCTACGTTCTGCACATCTGACTGCAGCTCATAACAGACACATAAAACAAAGCAAGCCCCAGCTTGCTTTATACAGCCGACTCCATAACTGTTGGCACCCCTCAGGAAAATCGATAAAAAGACTGGATGAAATAACACATTTTCCTGACAAGCAACTGGAGAAACTCATTACCTTTCAACTTAAaaatatagctttttttttggggggtggcACAGTAGGTAGAcagctgcc
>XM_026920815.2
aggaGGGGCAAAGTGGGAGACAGTGACGGGGAAAGTACAGGAACAAGACAGGAACAACCATCACTACAGTTGTTCCAGCGGATACACAGATTTCTTCCTGCACTTACAAGCTGacataCAAGACCTGACCAACCGGGATGAATCCAGCCAGGAGCGTCCAGCTAATCCTGATCCTCTACCTCCAATGCATCTACGTGTGCACACCTGCCCCGGCTCATGGTCATGCAGAGGAGAGACTACTTCAGGTTTTATTCCGTCGCTATAACAAGCTCTCACGTCCTGTAGAGAACATCTCAGATGTGGTGCTGGTCCACTTCGGCCTTTCCATCGCACAACTCATTGATGTAGATGAAAAGAATCAAATGATGACCACCAATGTTTGGGTGAAACAGGAATGGAGCGATTACAAGCTGCGCTGGAACCCTGAGGAGTTTGAGAATGTCACCTCCATCAGAATCCCCTCCGAGCTCATCTGGAGGCCTGATATTGTGCTCTACAACAATGCTGATGGAGATTTCGCCGTGACCCACCTGACCAAAGCCCAGGTGTTCCACGATGGCAGAGTCAAATGGAAGCCTCCTGCCATATATAAGAGCTCCTGCAGTATTGACGTCACGTTCTTCCCTTTCGATCAGCAGAACTGTAAGATGAAGTTTGGCTCGTGGACGTATGACCGAGCTAAGATCGACTTGGTCAGCATGGACAGCAATGTGGACCAAATGGACTACTGGGAGAGTGGTGAGTGGGTCATCATCAACGCTGTGGGAAAGTACAACAGCAAGAAATATGAGTGCTGCACAGAAATCTACCCAGACATCACATACTACTTCATCATCCGCCGGCTCCCTCTGTTCTACACCATCAATCTGATCATCCCATGCCTGCTGATCTCATGCTTGACCGTGCTTGTGTTCTACCTACCATCGGAGTGTGCTGAGAAGATCACGCTGTGCATATCGGTGctcctctcactcactgtcttcCTGCTGCTCATTACAGAAATCATCCCTTCCACCTCGCTGGTCATCCCACTCATCGGTGAGTACCTGCTCTTCACCATGATCTTTGTCACGCTTTCTATCATCATCACCGTGTTTGTGCTGAACGTGCACCACCGCTCATCCCGCACGCATCGAATGCCTCATTGGGTCCGCCAGCTCTTTCTCCACCTGGTCCCGAGATACCTCTTCATGAAACGTCCACCCGCTGCTGGAAAGAGGAACTGCCGCAAACTCATTGAAATGATGCATAGGCCAATGGCACTGCAGCCCATCCAGCAGGGCAACCCCACCTTGACCATGCCCCTCGATCTGGCCATGGTCTCTGCTAGCTCATCATGTGCAATGCACCGAGAAGCAGCATCCAAATCTCCTCTTTTCTGCAGCTCCCCCAGTAGTCAGTACTCCATCCTTCAAGAGGAGCCCACACACATGAACCTCACTCCTGGACTCACATGCACTCAAGTGAACACTTCCTCTACCTCAAGCCCTTCTTTGTCTCCAGATGCACCCCTTGGGCCTCTGCTTCAAACGTTAGCTCTCAGTGAGGTTTGTGAATTTCAGTGCCACAGTGCTGAGAGTGTATTTGTGGATACCACAGAAGGTACGCATGAGACAGGAACTCTTTGGCACTGTCATAAGCATGAGGAGACAAGTATAAAGACATACGTCACTGCAGATAGAAGTGAAAGTACAGGTTCATGTATAAGACACAAGGTCCGGGGCACTCAAATCTCAAGCCCCAGCTGTAGTAAAGAATCCAAGCTGGAGGAAACTGAGTTTCCAGTGTCACAGTCACTCCTGCGGGCCCTCGAGGGAGTCCAGTACATCGCCGACCATCTCAGAGCTGAGGATTCAGACTTTTCGGTAAGAGAAGACTGGAAAtatgttgccatggtgattgATAGAATATTTCTCTGGATGTTTGTGCTGGTGTGCATTTTGGGTACAGCGGGACTGTTTCTGCCTCCTTGGTTGGCTGGAATGATCTAGAATCTGACACTGAGCTCAGCATTGAACAAGAAACCTGCCAAACACTTTCAGTGTCCTCATCCAGATCCACTGTTTTTGACTGTACAAATATCTGCAATATCATAATATCACATTCCAGAGTGGCCAATGTAACGATGAAGCATTTTTTCAAGGTCAGCTTATATTTCCTTGAAATGCTTTCAAGGCACAAAATGGTTTATTCCTGTCCTTTCAACAAAGGCCAGTTTCTGTTGCAAATAAGCTGCTGTGCCTTCTTCTGAAACTTTCCTTCATTTGTGTATTATTCCCTTTAAATTCACGCTTTAAATCTGTGCCAATTATAACCACATACCTTCATGCCATTTGTTATATATTAAAGGATCTGCTACAAAACTAGatgaataaaattttacatACTGACAGCATAAAAGCAATTCATATTGAAATTTATTTAGAATAATCTAGATATTCACGTGCCATATTtgtactgttgtgtttttcgCAGGGAGGCgtaaataaatgattcaatGGAATAAATTCACTGGGCATCCATGTTACCCTAGAGCTCTATTTGTCATCTCTGTCTAAACAGATTGTGAGAAATAGCCTTCTGCTCTATCTGGTGGTGATTATAGCACAATAGATACTGACAGAATACACCACCAGATTTTGTCCACGTACACACACAATGGCAGGATGTAGAGATAAGCTTCTGTGCCACAGTTCATGCTGTCAGCTAGGAAGCTATAGCTGGATGcctaataatgaaattatatttcaaGAAAATAGTTACATCTTTAATCAAGAACAACAAAGGCTTGAGTTTCTTTCATAATAGTGCAGTCTGTGTTTAGAATCAAATGAGGTAAAACTCACTCACTCTGAAAAACAACAGGAGGGTTCTTCAGTGAAAACTGGTCAATACATCATAATCAAATATACTGACATGATCTTAGGCCAAAGCAAGAGACTTGTAGCTACGTTCTGCACATCTGACTGCAGCTCATAACAGACACATAAAACAAAGCAAGCCCCAGCTTGCTTTATACAGCCGACTCCATAACTGTTGGCACCCCTCAGGAAAATCGATAAAAAGACTGGATGAAATAACACATTTTCCTGACAAGCAACTGGAGAAACTCATTACCTTTCAACTTAAaaatatagctttttttttggggggtggcACAGTAGGTAGAcagctgcc

Function

symbol description
chrna4 Enables acetylcholine receptor activity and acetylcholine-gated cation-selective channel activity. Involved in several processes, including DNA repair; behavioral response to nicotine; and response to hypoxia. Part of acetylcholine-gated channel complex. Implicated in autosomal dominant nocturnal frontal lobe epilepsy 1 and nicotine dependence. Biomarker of Alzheimer's disease and Lewy body dementia.

NR:

description
neuronal acetylcholine receptor subunit alpha-2-like

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04806 CHRNA4; nicotinic acetylcholine receptor alpha-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920807.2 True 3364 mRNA 0.46 7 20968735 20989421
XM_026920815.2 False 3177 mRNA 0.45 7 20983032 20989421

Neighbor

gene id symbol gene type direction distance location
elovl1b LOC108270818,LOC108438650,LOC107656106,LOC107753833,LOC107665848,LOC107562086,LOC107723066 coding upstream 20944 20932742 ~ 20947791 (+)
LOC113530200 LOC108270822,LOC108438687 coding upstream 81391 20881535 ~ 20887344 (+)
mast3b mast3 coding upstream 129146 20806331 ~ 20839589 (+)
si:ch211-1a19.2 NA coding upstream 246929 20719431 ~ 20721806 (+)
sid1 NA coding upstream 250833 20716531 ~ 20717902 (+)
hcn5 LOC108270784,LOC103027332,LOC107658208,LOC107712254,LOC107724451,LOC107668864,LOC107569239,LOC107597416 coding downstream 39973 21029394 ~ 21036574 (+)
txlng txlng,LOC107723067,LOC107665847 coding downstream 53879 21043300 ~ 21050473 (+)
zrsr2 zrsr2,LOC107729896,LOC107602790,LOC107753840 coding downstream 73996 21063417 ~ 21070097 (+)
npepps npepps,LOC106587691,LOC107718863,LOC107674532 coding downstream 97496 21086917 ~ 21105876 (+)
mrpl45 mrpl45,LOC107753856,LOC107680544 coding downstream 119172 21108593 ~ 21114493 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding upstream 834 20964535 ~ 20967901 (+)
G185330 LOC101478692 non-coding upstream 72274 20890247 ~ 20896461 (+)
G185206 NA non-coding upstream 260708 20705994 ~ 20708027 (+)
G185182 NA non-coding upstream 400443 20568076 ~ 20568292 (+)
G185092 NA non-coding upstream 413611 20554856 ~ 20555124 (+)
G185418 NA non-coding downstream 13407 21002828 ~ 21024560 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding downstream 69643 21059064 ~ 21060228 (+)
G185439 NA non-coding downstream 87754 21077175 ~ 21339714 (+)
LOC113528706 NA non-coding downstream 247883 21237304 ~ 21248130 (+)
G185500 NA non-coding downstream 400930 21390351 ~ 21390568 (+)
G184979 NA other upstream 817841 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1097272 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1123497 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 1134321 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 1268461 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 199827 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 262724 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 969467 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1323021 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3218455 24207876 ~ 24210763 (+)

Expression


Co-expression Network