lims1 (lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729)


Basic Information

Item Value
gene id lims1
gene name lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21756590 ~ 21770086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921487.2
TTGACGGTCCCTCAGCAGAAGGGTGGGGTCACTGAAAATCCAGCGCCTGGAGCAAAGcggagaggaaaaaaagtgtttagCTGCTAGCAGTGTTGCATTTCTTTGCTGAAATACTTCATATAAACCTAGTTTAAAGTTGTCGACTCTCAATACTCGTCCTGGATTAGCTGTCTAGTAGGGGATGCTGGGTGTGTCAGAAATGACGGGCAGCAATATGGCCAATGCCCTGGCAAATGCCGCATGTGAGCGTTGTAAAAGCGGCTTTGCCCCGGCGGAGAAGATCGTCAACAGTAATGGCGAGTTGTACCATGAGCAGTGCTTCGTCTGTGCCCAGTGCTTTCAGCAGTTTCCAGAGGGACTCTTCTACGAGTTTGAAGGCAGGAAGTACTGCGAGCATGATTTCCAAATGTTGTTTGCCCCTTGCTGTCACCAGTGTGGTGAGTTCATCATTGGCCGTGTGATTAAAGCGATGAACAACAGCTGGCACCCTGACTGCTTCTGCTGCGACATTTGTCAGGCAGTGTTAGCTGATGTTGGATTTGTCAAGAATGCTGGCCGtcATCTGTGTCGTCCATGTCATAATCGGGAGAAGGCTCGTGGTCTTGGGAAGTACATTTGTCAGAAGTGCCATGCCATCATTGATGAGCAGCCTCTCATCTTCAAGAATGACCCCTACCATCCGGATCACTTCAACTGCAGCAACTGCGGTAAGGAGTTGACTGCTGACGCTCGGGAGCTGAAAGGAGAGCTCTACTGTCTCCCATGCCATGATAAAATGGGAGTGCCGATTTGTGGAGCCTGCAGAAGGCCTATCGAAGGCCGTGTGGTAAATGCCATGGGCAAGCAGTGGCATGTTGAgcATTTTGTGTGTGCTAAGTGTGAGAAACCCTTCCTGGGTCATCGCCATTATGAAAGAAAAGGGCTGGCATACTGCGAGACTCACTACAACCAGCTTTTTGGTGATGTCTGCTACCACTGCAACCGAGTGATCGAAGGAGATGTTGTGTCGGCTCTGAACAAAGCCTGGTGTGTCAACTGCTTCTCCTGTTCTACCTGCAACACCAAGCTCACGCTGAAGGACAAATTTGTAGAGGTTGACCTGAAGCCGGTGTGTAAGCACTGCTACGACCGGCTGCCCGAGGAGCTGAAACGGCGCCTTGCTAAACGCGAACGTGATGCTcgtgagaagaagaagaagacggttgctgtctgtctgtaa
>XM_026921496.2
TTGACGGTCCCTCAGCAGAAGGGTGGGGTCACTGAAAATCCAGCGCCTGGAGCAAAGcggagaggaaaaaaagtgtttagCTGCTAGCAGTGTTGCATTTCTTTGCTGAAATACTTCATATAAACCTAGTTTAAAGTTGTCGACTCTCAATACTCGTCCTGGATTAGCTGTCTAGTAGGGGATGCTGGGTGTGTCAGAAATGACGGGCAGCAATATGGCCAATGCCCTGGCAAATGCCGCATGTGAGCGTTGTAAAAGCGGCTTTGCCCCGGCGGAGAAGATCGTCAACAGTAATGGCGAGTTGTACCATGAGCAGTGCTTCGTCTGTGCCCAGTGCTTTCAGCAGTTTCCAGAGGGACTCTTCTACGAGTTTGAAGGCAGGAAGTACTGCGAGCATGATTTCCAAATGTTGTTTGCCCCTTGCTGTCACCAGTGTGGTGAGTTCATCATTGGCCGTGTGATTAAAGCGATGAACAACAGCTGGCACCCTGACTGCTTCTGCTGCGACATTTGTCAGGCAGTGTTAGCTGATGTTGGATTTGTCAAGAATGCTGGCCGtcATCTGTGTCGTCCATGTCATAATCGGGAGAAGGCTCGTGGTCTTGGGAAGTACATTTGTCAGAAGTGCCATGCCATCATTGATGAGCAGCCTCTCATCTTCAAGAATGACCCCTACCATCCGGATCACTTCAACTGCAGCAACTGCGGTAAGGAGTTGACTGCTGACGCTCGGGAGCTGAAAGGAGAGCTCTACTGTCTCCCATGCCATGATAAAATGGGAGTGCCGATTTGTGGAGCCTGCAGAAGGCCTATCGAAGGCCGTGTGGTAAATGCCATGGGCAAGCAGTGGCATGTTGAgcATTTTGTGTGTGCTAAGTGTGAGAAACCCTTCCTGGGTCATCGCCATTATGAAAGAAAAGGGCTGGCATACTGCGAGACTCACTACAACCAGCTTTTTGGTGATGTCTGCTACCACTGCAACCGAGTGATCGAAGGAGATGTTGTGTCGGCTCTGAACAAAGCCTGGTGTGTCAACTGCTTCTCCTGTTCTACCTGCAACACCAAGCTCACGCTGAAGGACAAATTTGTAGAGGTTGACCTGAAGCCGGTGTGTAAGCACTGCTACGACCGGCTGCCCGAGGAGCTGAAACGGCGCCTTGCTAAACGCGAACGTGATGCTcgtgagaagaagaagaagacggttgctgtctGAACAAGTTTGTGGAGTTTGACATGAAGCCCGTGTGTAAGAAGTGCTATGAGAAGTTTCCCCTGGAGCTGAAGAAGAGGCTGAAGAAGCTGGCTGAAACTGTGGCCCGCAAGTAGACTTCGAC
>XM_026921504.2
TTGACGGTCCCTCAGCAGAAGGGTGGGGTCACTGAAAATCCAGCGCCTGGAGCAAAGcggagaggaaaaaaagtgtttagCTGCTAGCAGTGTTGCATTTCTTTGCTGAAATACTTCATATAAACCTAGTTTAAAGTTGTCGACTCTCAATACTCGTCCTGGATTAGCTGTCTAGTAGGGGATGCTGGGTGTGTCAGAAATGACGGGCAGCAATATGGCCAATGCCCTGGCAAATGCCGCATGTGAGCGTTGTAAAAGCGGCTTTGCCCCGGCGGAGAAGATCGTCAACAGTAATGGCGAGTTGTACCATGAGCAGTGCTTCGTCTGTGCCCAGTGCTTTCAGCAGTTTCCAGAGGGACTCTTCTACGAGTTTGAAGGCAGGAAGTACTGCGAGCATGATTTCCAAATGTTGTTTGCCCCTTGCTGTCACCAGTGTGGTGAGTTCATCATTGGCCGTGTGATTAAAGCGATGAACAACAGCTGGCACCCTGACTGCTTCTGCTGCGACATTTGTCAGGCAGTGTTAGCTGATGTTGGATTTGTCAAGAATGCTGGCCGtcATCTGTGTCGTCCATGTCATAATCGGGAGAAGGCTCGTGGTCTTGGGAAGTACATTTGTCAGAAGTGCCATGCCATCATTGATGAGCAGCCTCTCATCTTCAAGAATGACCCCTACCATCCGGATCACTTCAACTGCAGCAACTGCGGTAAGGAGTTGACTGCTGACGCTCGGGAGCTGAAAGGAGAGCTCTACTGTCTCCCATGCCATGATAAAATGGGAGTGCCGATTTGTGGAGCCTGCAGAAGGCCTATCGAAGGCCGTGTGGTAAATGCCATGGGCAAGCAGTGGCATGTTGAgcATTTTGTGTGTGCTAAGTGTGAGAAACCCTTCCTGGGTCATCGCCATTATGAAAGAAAAGGGCTGGCATACTGCGAGACTCACTACAACCAGCTTTTTGGTGATGTCTGCTACCACTGCAACCGAGTGATCGAAGGAGATGTTGTGTCGGCTCTGAACAAAGCCTGGTGTGTCAACTGCTTCTCCTGTTCTACCTGCAACACCAAGCTCACGCTGAAGAACAAGTTTGTGGAGTTTGACATGAAGCCCGTGTGTAAGAAGTGCTATGAGAAGTTTCCCCTGGAGCTGAAGAAGAGGCTGAAGAAGCTGGCTGAAACTGTGGCCCGCAAGTAGACTTCGACACCCACAGGGGGCGCCCGAGACCCAGTGAACTTTCCTGTGCTTGATGGAATGGAGACCATGCATTTCTATAGCCTTAATATCCTCTTGCATTGCTACTCAGTGGTGTTAGTTGTATTagttcagtattcagtattacTCTTGTATTTGAGGAAAGCCCAGTGAATGAGGCAAATATTTTTCACTTATTGCTCCATACTTCTAATCAGAGTGCCTCttcatttattataattcagGAACCAAAAGGCTTTATGTTTGGtagaaatgtatataaaacttttattcaGTATATGCAATAAGAAGCTTCacaataatcagtgtgtgtgatgtaatgtgCAGTTTACACACTAGAATGCCTTGATGGATTGAATTGCCCTTCTAACATGATACACTGCTTTTACTGTATAGCCAAAGTTGTTTGCCTTTATGTAATCCTATTTTATAATGGTATATTCTGTGAGAAACGggtaaagaaagaatgaaaaaaaaacaaaacaaaacaaaaacctgttTACACGTCTCACTTTAACTGAAATATATATTCTAAATATAAGTTCTAAATCAAACTCCTACCATGATATCACCTTTTTATGTATGTGCTAATATTAcaggcttattattattattacatgattGTATTAAAATACAGTAGGTTGGTGTTAAGGTTGTGCTTTTGGAAAAGTCCTGGCAGATTTGAAGCTGTAAAATCTTAAATATGCCAAATGTTTTAACTGATCAAAGGGTCCAGACTAATAAGGACTTTAAAAAGTTCTCTAAAAATTGTACGTACTCCTGATGCTTTTCAGCGTTATCATATGTGAATCATGGCCGAGTGTTAGGAAAGTATTAGCTTCTGCATTTGAGGAATGACGAGTTACAGTGTGTGCAGCTGAATGTATCGAATTGctacacatcatttttttttttataacttccctgaaaaaaacaaacacacacatagttcATGTACCAGGATTTAATTTAAGTGTGTTTAGTGTCCCACGagcaagtgtgtgattttttttattttatttttattttttacagcaaaatgtGATATGTTTTCTACATCTTGGGCCAAAAATCTGACATGTTGAAAGGACCAGCAGTGTTTTTAGttatttccccctttttttcaaACTGTATATTGTAGATGATGTtctgggtattttttttttttgtccacttCATTTGATTTCCATTTAAGATTTCCACCAGTGACTTTACACAGAATAAAAGCAAACATAAGTAATTACAGCTGAGCATTATATGCAACTATTCATCTTATTTATGCTATACCATTTCACTGTATCTCTAATATGCTGATTAATGCTTTAaacatatgcaaataaaatatgcaCTCGTGA

Function

symbol description
lims1 Predicted to enable metal ion binding activity. Acts upstream of or within heart contraction and regulation of protein kinase B signaling. Located in Z disc and intercalated disc. Is expressed in EVL; hatching gland; heart; periderm; and polster. Orthologous to human LIMS1 (LIM zinc finger domain containing 1).

NR:

description
PREDICTED: LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

GO:

id name namespace
GO:0051896 regulation of protein kinase B signaling biological_process
GO:0060047 heart contraction biological_process
GO:0030018 Z disc cellular_component
GO:0014704 intercalated disc cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23354 LIMS1_2, PINCH1_2; LIM and senescent cell antigen-like-containing domain protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921487.2 False 1219 mRNA 0.51 10 21756590 21766584
XM_026921496.2 False 1334 mRNA 0.51 11 21756590 21768721
XM_026921504.2 True 2565 mRNA 0.41 10 21756590 21770086

Neighbor

gene id symbol gene type direction distance location
nxph2b LOC108270824 coding upstream 134313 21616189 ~ 21622277 (+)
si:ch211-227n13.3 LOC108270813 coding upstream 141298 21611776 ~ 21615292 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding upstream 150676 21561055 ~ 21605914 (+)
tbr1a LOC108270775 coding upstream 197588 21554701 ~ 21559002 (+)
psmd14 psmd14,psde,LOC107563735 coding upstream 204323 21532681 ~ 21552267 (+)
fam43a fam43a,LOC106573864 coding downstream 1362881 23132967 ~ 23135152 (+)
LOC117598438 NA coding downstream 1399797 23169883 ~ 23170911 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding downstream 1608595 23378681 ~ 23387676 (+)
kif14 kif14 coding downstream 1618984 23389070 ~ 23410114 (+)
LOC113526144 LOC108270555 coding downstream 1642943 23413029 ~ 23473569 (+)
G185751 NA non-coding upstream 196211 21560167 ~ 21560379 (+)
G185546 NA non-coding upstream 268063 21488324 ~ 21488527 (+)
G185533 NA non-coding upstream 289652 21466332 ~ 21466938 (+)
G185519 NA non-coding upstream 310110 21444384 ~ 21446480 (+)
G185503 NA non-coding upstream 346798 21407479 ~ 21409792 (+)
G185940 NA non-coding downstream 250762 22020848 ~ 22021059 (+)
G185997 NA non-coding downstream 611312 22381398 ~ 22381611 (+)
G186046 NA non-coding downstream 658772 22428858 ~ 22429104 (+)
G186060 NA non-coding downstream 785363 22555449 ~ 22899731 (+)
G186058 NA non-coding downstream 1120198 22890284 ~ 22942348 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 491535 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 546051 21189248 ~ 21210539 (+)
G184979 NA other upstream 1605696 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1885127 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1911352 19836145 ~ 19845238 (+)
trnap-agg_1 NA other downstream 188802 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 542356 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2437790 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 2793314 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 3761659 25531745 ~ 25696872 (+)

Expression


Co-expression Network