col9a1a (LOC108438673,LOC108270765,LOC107753862,LOC107680514,LOC107597184)


Basic Information

Item Value
gene id col9a1a
gene name LOC108438673,LOC108270765,LOC107753862,LOC107680514,LOC107597184
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21359474 ~ 21373371 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922435.2
GGTGATTCAGTGCAGGAATATTGACAGAAAAAGCGTGGACCCCCAAAAAGGACTTTTTGCCTTCTCTGAGACATCAAGGAGACCATGGCGTACGCCAGGACTCTCCGAGCCTCCTTACTGGTGATTTTACTGCAAATATTCCTCATCTGTTCTGCTCAGaggGGCCCGGTTGGTCCCAGGGGGCCACCCGGCCCTCCAGGTTTTCCTGGCATCGATGGCATTGATggaGAGAGGGGTCCAGGCCCTGGACTGGATGGACCTCCAGGCCAAGATGGAGACGATGGAAAAAACGGTTCTAGTGGACTACCAGGAAATCCGGGAGCAGACGGTGAGATTGGGCCTGGTGGAGATCCTGGCCCAGTTGGGCCCATTGGACCAAAAGGTGAACCTGGCGATCCTGGACCTAGAGGAATTCCTGGGGCTGGAGAGGATGGAGAACCTGGTGCAGATGGAGAGGATGGATTGCCAGGAGAACTGGGCAAAGCCGGACCTCCAGGGAGCCGTGGATTGAGAGGGTCTGTTGGACTTCCAGGACCAGCTGGACTGAGAGGCCCCCCTGGTGTTTGGAATGGTGAAGAATTGTGTCCTAATGCCTGCACACGTGGACTGACCGGCTATAGTGGACTAGCAGGAATGAAAGGCCACAAAGGTATCAAAGGCGAACCTGGAGAACCAGGAAGACAAGGACATAAGGGTGAAGAAGGAGAACAAGGGCCccctggagaacctggagcacaAGGAAAAACTGGTCCACATGGACTAAGAGGCATCACTGGTTTGATGGGTTCTAAAGGTGACAGGGGCTTCCGTGGGATAGATGGTGACTTGGGTCCTCAGGGCATTCAAGGAGCTCCTGGTGATCGAGGGCAAAGAGGAAAAGTGGGTGAGACTGGACCAAACGGAGCTCAAGGGCCTCTGGGACTTCGAGGCATTTTAGGTTTACCTGGACCCAAAGGAGAACCTGGTTTGCCAGGAATAGACGCTCGTGAGGGTATTCCAGGATTGCCAGGCGTTAAGGGTATCCCTGGCAAAGTAGGCCCTCCTGGTGAAGCTGGCCTTCAAGGCCTGCCTGGTTTGCCAGGCATTCCAGGTGCAAAGGGTGAGAGTGGGCAGAAGGGAAACTCTGGTGATCCAGGTGTGGCAGGACCAATTGGGAACAATGGGAAATCAGGTGAACGTGGCGAACAGGGAGAAGTGGGACCAGTAGGACCAAGAGGTGGGCCAGGTGAGAGAGGGGTGAGGGGTCCAGATGGGCCGCAAGGGCAGCCAGGTCCAAGGGGACCTAAAGGGAATCTCGGTCTACCTGGCGTTCCAGGTCCATCTGGTTTTCGTGGTCAGCAAGGCGACAGGGGCGCAGTTGGTCTCACTGGTCCAAAAGGAGAGCAGgGAGCACCCGGTGAGGAGGGCGCTCCAGGAGAAAGAGGGGACGTAGGTGATCAAGGGGAACCAGGAGAGAAAGGTTCGGTGGGAAAACCAGGTGATACAGGAAACAAAGGTCCAGAGGGAATGCGTGGACAGCAGGGACCTGAAGGTGGACCAGGTCAGCCAGGACCCAGAGGCATGCAGGGAGACCGAGGAGAACGCGGCTTACCTGGTGCACAAGGACGACCGGGTCGAGGACCAACAGATCAACACATCAAGCAGGTCTGCATGAGGGTTATGCAAGAGCAGCTCGCTCAGCTTGCAGCAAGCCTAACGAGGCCTCCGTCTGGCATTGTCGGGATGCCAGGTCCTCCCGGCCCTGCCGGCCCTCCTGGCTCGCCTGGAGACAACGGCTTCCCGGGACACACTGGAGCCAGAGGATTGCCAGGTCTTAAAGGACCTCCTGGACTTATTGGACTAAAAGGACCTAAAGGTGACATGggagacagaggagacagagggCCTACAGCACAAGGGCCTAAAGGCATTCCTGGACCACCAGGTCTTCCAGGTGAGCCCGGGCAGCCCGCATATGGCAACGATGGGCGTGATGGTATGAGAGGGCCTCCTGGTGTATCAGGAATTCCCGGCATTCCAGGACCTCCTGGGCCTCCTGGGCTTAACGGATACTGCGAGCCATCACAGTGTGTCCTCAGCCCAGTAGCACCGCCATCTCTCAAAGAGTCCATGATGAAGGGACCAGACGGACTTTAAAGTGGCTGCAGAATTGAAGTTCAGAGACTAACAGAAGGGAAACCCTTCACCAATGGAGTCTTTATTTTGAGGGGTATCCAGTGTAGTACTTTTTCTGCAATCACAGTGTGATTGATATTTCCATAGTGCATTCTGATTTTCCTTAAAGATATACCATGGAAGATTTTATGCCTTGAAATATTTGTGAGACATCTTTACATTACAGGGCTAAACATTCCAGTATGCAGAAATGGACTTCCTATAAAAATGGACTTCCTATAAAAGACATgaattaattctttttaaatggTCAGTCATACAAAAACTTACATGATACATCCAGGGGAGTTATTTTCCAACTGAAGTATACCAGTCCATTCCTATCTTTACAGAGTAACCATAAAAATCATGAAATGTACTAAATCTTCATGTATAGTCACAttgaaaatgcaaaatgtttatacaCTAGTACATAATGTAAATACAGTTTATCATTACCTCAAATTGACTGTTCTTCATATTCTCcatgccatttttttaaatattcagaattaaaaaaatatttctaaatcagtgtaaatcattttaaacattcaatTTGTTCAATTACATGTAATTAAGTGTTCATCTTCTTATTACCCCGTAAGTACAGTCTACTAGTTACATTCAGTGTGTGAACTTTTCAatggtattatttattttctaaaaggTTCAATGTCACACCAACATTTGTGAAAATGGGTAAATAAATGGTTTTGATAAAGctc

Function

NR:

description
collagen alpha-1(IX) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922435.2 True 2882 mRNA 0.50 32 21359474 21373371

Neighbor

gene id symbol gene type direction distance location
mrpl4 mrpl4,LOC107680457,LOC107753863,LOC107597183,LOC107680460 coding upstream 8143 21346217 ~ 21351331 (+)
c11h6orf120 c10h6orf120,LOC103038725,LOC105905813 coding upstream 15060 21339943 ~ 21344414 (+)
krt94 LOC108270801,LOC108438672,LOC103031381,LOC102787562,LOC102307626 coding upstream 35205 21321091 ~ 21324269 (+)
krt15 LOC108270790 coding upstream 66557 21290434 ~ 21292917 (+)
krt99 NA coding upstream 81522 21270459 ~ 21277952 (+)
lgsn lgsn coding downstream 10502 21383873 ~ 21390206 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 159310 21532681 ~ 21552267 (+)
tbr1a LOC108270775 coding downstream 181330 21554701 ~ 21559002 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding downstream 187684 21561055 ~ 21605914 (+)
si:ch211-227n13.3 LOC108270813 coding downstream 238405 21611776 ~ 21615292 (+)
G185439 NA non-coding upstream 19760 21077175 ~ 21339714 (+)
LOC113528706 NA non-coding upstream 111344 21237304 ~ 21248130 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding upstream 299246 21059064 ~ 21060228 (+)
G185418 NA non-coding upstream 334914 21002828 ~ 21024560 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding upstream 391573 20964535 ~ 20967901 (+)
G185500 NA non-coding downstream 16980 21390351 ~ 21390568 (+)
G185501 LOC108270736,LOC105903432 non-coding downstream 17473 21390844 ~ 21391810 (+)
G185502 NA non-coding downstream 21991 21395362 ~ 21404052 (+)
G185503 NA non-coding downstream 34108 21407479 ~ 21409792 (+)
G185519 NA non-coding downstream 71013 21444384 ~ 21446480 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 94419 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 148935 21189248 ~ 21210539 (+)
G184979 NA other upstream 1208580 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1488011 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1514236 19836145 ~ 19845238 (+)
trnap-agg_1 NA other downstream 585517 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 939071 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2834505 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 3190029 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 4158374 25531745 ~ 25696872 (+)

Expression


Co-expression Network