slc1a8a (slc1a8a,LOC108271187,LOC108437258,LOC104955947)


Basic Information

Item Value
gene id slc1a8a
gene name slc1a8a,LOC108271187,LOC108437258,LOC104955947
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20171890 ~ 20181242 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922496.2
ATGGAGGAGTTCCTGATTCCCGAGGATGCTCGCTCTGAGCACAGCTTCTTCTCTCCGATCGGCTCAGGGAAAAACAGACTGGACAGTGTAAAGAACTTGCTGCTATACATCAGGGACTATGTGAAGCGAAATGGGCTGCTGACTCTGTCTGTGCTCGGAGTGTTTACAGGATGCATCCTTGGCTACACACTCAGGGGATGTGAACTCTCCACGCAGgcaaagattTATCTGTCATTCCCTGGTGAACTCCTTATGAGAATGCTAAAAATGCTCATTCTGCCCCTGATCACCTCAAGTTTAATGTCAGGTCTGTCATCGATGGAATCCAAGGCTTGTTGTCATATGGGCTTGCTAACTGTGACCTATTACCTGTGGACCACCTTCATTGCTGTGGTGGTTGGCATTGTACTGGTGGTGATCATCAAACCAGGCTTTGCAACAGACATGGAGAGCACCAGGCTGGGAGGAGGACCGGTGATGACCTCAGCAGACGCTCTGCTCGACCTTGTCAGGAACATGATTCCTTCAAATCTCATAGAGGCCACATTTCAGCAGTACAAGACAGATCTTATTCCTGTTCTTAAAACACAAGACAGCAACAAGCAGCACAACTTTGTTTACCTGATGCCAGATGAGGATCATCCTAAAGGTCACACAGTGTTACTTGATCTCACTCCACCTCCTGATATCCACTACAAGATATATCCTGGAAGCAGCCACCAAATGAACGTTCTGGGGATCGTCATCTTCTCAGCCACTATGGGGCTTCTGCTTGGCAAAATGGGTGAGCGAGGTGCGCCTTTAATCAACGTCTGCCAGTGCATCAATGAGTGTGTCATGAAGATGATCAATGCAGCAGTGTGGTATTTCCCCTTTGGGATCATCTTTCTGGTGGCTGCGAAGATCCTGGACATGAGTGACCTCTCCACTCTGGGGAAGAAGCTAGGCTGGTACGCAGTGACCGTTCTGGCTGGGCTGTTCGTCCATGGCTTCATTCTTCTTCCTCTATTTTATTTCCTCTTAACACGCAAGAACCCCTTCATGTACATCAGAGGACTGCTGCAAGCTATGGTCATTGCCTTAGCCACATCCTCAAGTTCTGCCACGCTGCCCATTACAATGAAGTGCTTGCTGGAGAACTGTCAAGTAGAAAGACAGATTGCACGCTTTGTCTTACCCGTGGGTGCCACCATCAACATGGACGGCACTGCTCTCTATGAAGCGGTGGCAGCCATCTTCATCGCTCAGGTCAACGAGTACGAGCTTGATTTTGGACAGATGGTGACAATAAGCATAACGGCCACTGCTGCAAGCATTGGTGCTGCAGGCATCCCTCAGGCTGGCCTCGTAACCATGGTGATAGTGCTGACATCTGTAGGATTGCCACCAGATGACGTCACACTGATTGTGGCCATCGACTGGATTCTGGATCGATTTCGAACAATGATTAATGTACTAGGAGACTCCCTGGCTGCGGGAATCATCGGCCATTTGTGTCGGAAAAATTTTGCCCCTGATAAAAGGGGATCAGCCAGTGGATCATGTCGGAATACAAATCATGGCCGAAACATGGAGAATGTTCATTTGACTGAGGTGCCGCTGCTTGCAGGAAAAGACTGCATGTATGAGGTGGTTGGAGATACGGTTATTGAGCGACCCACTGTCTACTACAACATCTGTCAAGTTTAACCTCGCAAGTGCCTTACAACCACCACATTTTGGAGACAAGTCTCTACTTGTGTGACTCTGCTGGTAGTTAAATGACCAAGCAGATCAAATATTCAACAATTATTCCTGTGattgtgttctttaaaaaaagaaaagaatgttgCATGCAAAGAACGAAAGGCCCTACTGCATAAATGCTGGCATCACACACTTTACAAGAGTGATGTCCGTATCAGCAGGTAGCAGAGAAAAGATGCATTACATGTATTGCCTTAAAATAGACTAAAAGTAAACTGACTACATTTTGTGACAAAAGTCATTTTTTGTATGTACTGTCTAAGATTTCCAGACTTATGTCTGTTACATAATGTTTCTGTAGAACGCCTGTAGTAATTATGAGCGATTTGCACAGAGATAGAAGTGTCTTTATGATGTACGCATCATCGTCACACTAAAAATATGCATACTACATCCATGCAAATTATGTATACCTCACTTTAATACGAACAGCTTGTTTATTACAAGTGC

Function

symbol description
slc1a8a Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: excitatory amino acid transporter 5-like

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K11102 gltP, gltT; proton glutamate symport protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922496.2 True 2196 mRNA 0.46 11 20171890 20181242

Neighbor

gene id symbol gene type direction distance location
LOC113530255 slc39a3,LOC106613601,LOC106573935 coding upstream 1482 20163215 ~ 20170408 (+)
sgta sgta,LOC107656077 coding upstream 8845 20153984 ~ 20163045 (+)
zgc:113223 LOC108271437,LOC108437285,LOC103041228 coding upstream 51294 20105710 ~ 20120596 (+)
apc2 apc2 coding upstream 68838 20076613 ~ 20103052 (+)
gadd45ba gadd45b,LOC107553537,LOC107597151,LOC107757925 coding upstream 200543 19969557 ~ 19971347 (+)
tmem259 tmem259,LOC106613615 coding downstream 367017 20548259 ~ 20563932 (+)
sid1 NA coding downstream 535289 20716531 ~ 20717902 (+)
si:ch211-1a19.2 NA coding downstream 538189 20719431 ~ 20721806 (+)
mast3b mast3 coding downstream 625089 20806331 ~ 20839589 (+)
LOC113530200 LOC108270822,LOC108438687 coding downstream 700293 20881535 ~ 20887344 (+)
G184900 ndufa11 non-coding upstream 216850 19954594 ~ 19955040 (+)
G184882 NA non-coding upstream 224407 19921471 ~ 19947483 (+)
G184823 NA non-coding upstream 362636 19808713 ~ 19809254 (+)
G184718 NA non-coding upstream 467640 19703635 ~ 19704250 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding upstream 507399 19661092 ~ 19664491 (+)
G184988 NA non-coding downstream 83694 20264936 ~ 20265620 (+)
G184987 NA non-coding downstream 84466 20265708 ~ 20320904 (+)
LOC117598445 NA non-coding downstream 85357 20266599 ~ 20294374 (+)
G185042 NA non-coding downstream 249887 20431129 ~ 20431338 (+)
G185037 ptbp1b,LOC107753809,LOC107593132,LOC107674525,LOC107723850 non-coding downstream 254553 20435795 ~ 20436587 (+)
G184979 NA other upstream 20996 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 300427 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 326652 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 337476 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 471616 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 1008006 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 1070903 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 1777646 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 2131200 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 4026634 24207876 ~ 24210763 (+)

Expression


Co-expression Network