zgc:172302 (LOC108271263)


Basic Information

Item Value
gene id zgc:172302
gene name LOC108271263
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19555712 ~ 19584739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922544.2
GAGCCCCTCCCACTTTCCTGTCTCTTCCTTCTGAGGTGTCCTCACGGACCGGCACCGGCTTCATGTCCCGACGGAGAGCAGGAATGTTTCAATATAATGCACTGTCcaagcaaaaataagaagccGTTTTGACAGCAGAGATACAACCATGGCCATAGGAACCCAGCTCTTACTCCTGCTGTGGAAGAACTTCACCTACCGCAGGAGGAACAAGATCCAGCTGATCATAGAGCTGCTTTGGCCTCTCTTCCTGTTCTTCATCCTCATCGCTGTACGTCACTCGCACCCTCCCTACAAGCACAGTCAGTGTCACTTCCCCAACAAAGCTCTCCCGTCTGCCGGCACTCTAGCATGGGTTCAGGGCATCATCTGCAACATCAACAACCCATGCTTCCACTACCCAACTCCAGGGGAGACGCCGGGTGAAGTGGGAAATTTTAATAACTCAATACTTTCTCGACTATTCGTGGATGGCAGGACCATTCTCTCCAACCTTGGCAATCAGACAACCCTCTCAGCCTTAGAGAACCTCTCGCTTGCTGTTCAGAGACTGGGCGAGAGGCAGGAAGCTTGGCCAAaTCTGACAGTGGAAGAGTACCTAAGGGTCAATGAGACATTCTCCTCCTTCTTGAGGACAAACTGCAGCCTTCCTCCTTCAGCTGTAGACCAGTTACTGAGAGCACGACTCAGCCTCCAGGTGGTGTCACTGGCAGGTGCTGGGATGCGTCTGTCCGATATCGTCTGTAATGCCACACTCCTGGACCGCTACCTCACAGTGGAAGGAGACTCCTCACTCACTGAGCTGCAGCAGTACTTATGTGCTGTTCCCTCAGATTTGCTGCAGCAGGCCGAGCAAATCTTCCTTTCACAACTGAACCTCAGCAAGATTTTCACAAGGGAGCGACTCCTCTCCAATGCTGCTGAAGTGCGTCTGCTCAGCCAGGCTGTCTCCTCTGTGGCTCGGGACTTCACCTCACATTTGAATGACATGTCTGCTTTATCCAGCTTCACGGAGCTGAATGCAGAACTGAGACTGCTTTTTCCAGAGAGTGGCTCAGTGCTACCGCGTGAGAGTTTTCGAGCTTTCTCCAGGATTATGTGCGGGCATCCTGAGGTGGGCGGTGAGAAGATTCCTTCCTTTAACTGGTATGAAGACCATGACATCAAGTCCTTCATGGGTAAAGATGGGACAGAGGAAAATGGCTTGGAAAATGACAACACTACCActcCATTTTGTAAAAACCTGATTCAAACCCTTGAGTCGAATCCCCTCTCTCGCATGGTATGGAGAGGCATTAAGCCACTTTTCATTGGGAAACTTCTGTACACACCGGATACTCCTGCTACACAGAGCATCATGAAAGAGGTGAACAGGACATTCCAGGACTTTGAGATTGCGGAGGTAAACGCCGCATGGGAGGAAGTGGGACCCAGGCTGAAGAGCTTCATGGAAAGCAGTGTGGAGATCCGTATGCTACAGGATTTGCTGAGGCGACCCGAGGTGGCCGTTGTGGTGAATCTTCAACTGGAGAACACTTCTTGGACAGCTTCTCGCATCGCACGCTTCCTCTCCACGCCGAATCGAGACACTCCTAAGAAAGAAGGGGCGCCTGCTACATGGCTGGACCTGTATCAGGATTTCAATAGCACCATAAGCTTCTTGTCCCAGCTCACAAAGTGTTTTTCGCTGAATAAGCTGGAGGGAATGGCCACAGAAGGGCAGCTGGTGGAGAGAGCATTGGAGCTGCTGGAGGATCGTCAGTTCTGGGCTGGAATAGTCTTCCTCCTCCCAGACCCTTCCTCCTCAGATCTTCCTCCCCACGTCAAGTACAAGATCCGCATGGACATAGATGATGTCACACGTACCAATAAAATCAAAGACAAGTTCTGGGATCCTGGTCCAGCTGCAGAGCCCTTCAGTGATCTGCGCTACATATGGGGTGGCTTTGTCTATGTGCAGGATTTAGTGGAACGAGCAATAACTCGTGTGCTGAGTGGCAAACAACCAACTACAGGAATATATATCCAGCAGATGCCCTACCCATGCTTTGTGGATGATGTCTTTCTGCGAGTCTTGAATCGTTCGCTCCCTCTCTTCATGACGCTGGCGTGGATATACTCAGTGGCAATGATCATTAAAGGCATGGTGTATGAGAAGGAGGCACGACTGAAGGAGACTATGAAGATCATGGGCTTGGGCTCAGGAACGCTCTGGCTCAGCTGGTTCATCAGCAGTTACCTGCCTTTTCTCTTCAGCTCCGGACTTCTCATTACTGCACTCAAGTTGGGAGATATCTTGCCCTACAGCGACCCTGCGGTTATCTTCTTCTTCCTGGCCGCCTTTGCTACAGCCACAATCATGTTGTGCTTCCTCATCAGTACATTCTTCTCTCGTGCCAATCTGGCAGCAGCCTGTGGAGGACTCATCTACTTCTCTCTCTACCTGCCTTATGTGCTCTGTGTGGCCTGGAGGGAATATCTGACCAGCACACACAGAATCCTAGCAAGCTTCCTCTCTCCAGTAGCCTTTGGATTTGGCTGTGAGTACTTCTCTCAGTATGAAGAGCAAGGAGTGGGTATTCAGTGGTTCAATCTTCTGTCCAGTCCTACTGAAGGAGACAACTACAACTTTACTACCTCAATCATAATGCTGTATGTGGATGCCTTCATCTATGGAGTGGCCACCTGGTACATTGAAGCTGTGTTTCCAGgGCAGTATGGAATTCCCAGGCCTTGGTATTTTATCTTCCAGTTAAATTACTGGGGAGGAGTACCGCTGGAGGCTGACATACCCATTCCTCCAGTACCATGTGATCAACCAGACGataaaattgaaCCAGAACCTTCTCATCTTGTCCTTGGGGTAGCCATATATGACTTGGtgaaaatttataaaaaagGGGCCAAGCTTGCTGTCAATCATCTGAACCTCAAGTTCTATGAGGGTCAGATCACGTCATTCCTGGGTCACAACGGAGCTGGCAAGACAACAACGATGTCCATTCTGACTGGGCTGTTCCCCCCGACTGCTGGCACAGTTTACATAAAGGGCAGGGACATTCGCACAGACATGGACATCATCCGTAGAACTCTGGGAGTGTGTCCCCAACACAATGTTCTTTTCCCAATGCTCACTGTAGAAGAGCATGTATGGTTCTATGGCCGTCTTAAAGGCATGAGCAGTGCCGAGGTTAAAGAAGAGATGGCCTCCCTGCTGGAGGATGTGGGACTGTTACACAAACGACACGAGCAGACCAGGAACCTCTCAGGCGGCATGCAGAGGAAGCTCTCAGTAGCTATAGCCTTCATAGGAGGTTCTAAAGTTGTTGTCCTGGACGAGCCCACTGCTGGAGTGGACCCCTATTCGCGACGTGGGATATGGGACCTACTGCTCAAATACCGCAAAGACCGTACCATTATTTTGTCTACACATTACATGGATGAGGCTGATCTCCTGGGCGACCGCATCGCCATCATCTCTCAGGGGAAGCTGTGCTGCTGCGGCTCGCCACTTTTCCTAAAAGCTCGTCTGGGCACAGGATATTACCTGACCATAGTGAAGAAGGAGCTCCCAAGTCTCACACCAAGCAGTACAAGTGCCGCCAATCTCTCAGCATCCACACTCATGAAGGAGAGTGATTCTTCCATGAGTGATGACACTGGACTTGGAAATGAGCTCTATGGCTCAGATGTGAGTGGCCTTGTGGCTCTTGCCCAACACCACATTGCTAGGGCTCAGCTGGTGGAAGATGTGGGCAGAGAAGCAGTGATCAACTTCCCCCATGCCGCCTCGGAAGATGGCACTCTCGCCCTTTTCTTGGCAGAGCTGGAGAAACGTCAGAGCGAGTTTGGCGTTGTCAGTTATGGACTCTCAGATACCACACTAGAGGAGATCTTTCTGAAGGTGGCTGAAGAGACAGGAGTAGATGCTGACCCAGAAGGAAGTGAGGGAGAACTGTCTGAGGACAGAGACACAGAAAGGATACAACATTGTAAAACAGATGCTAATGAAACGGACCCCCTAAGCAGTAATGTTCAGGGTGGCATGACCCTCACAGGCTGGGGGCTGACCTGGCAGCAGCTCCGCGCACTCTTTATCAAGAGGCTAAAGTACGCCCTCCGCAGCCGCCGAGGTTTCATAGCACAGattGTGCTACCTGCAGTATTTGTCATGGTGGCTCTGCTGTTCAGCCTCATTGTCCCTCCCTTTGGAAAGTATCCCCCTCTTGAGCTGCAGCCATGGATGTATGGCGAACAGTACACTTTCTTTAGCAATGATGCCCCAGAGAACCCTGAAATCCAGAATCTCCTTGATGCTCTTCTGGATCCTCCTGGATTCGGGACCAAATGCATGGAGTCAGACATGGAGCCCCAGTGTGAGGACAGTGAGGCGGGGACAGTGTTTCTGCGACCCCAGATTTCCTATACCACATGGCAGCTTTTTAACAAAGTCAACTGGACAGTTGAGCTCCCTTCTCCTGGCTGTGAATGCAGCACTGAGGATGTTCGCAGAATGCTACCTGAATGTCCACTGGGAGCAGGAGGCTTGCCTCCTCCCCAGATAAAAAGATTGACAGGTGACCTGCTGCAGAATCTGACTGGCCGTAATATTTCTGACTACCTCATCAAGACTTACCCGCAGATTCTGAAAAAAAGCTTGAAGACGAAAAAGTGGGTGAATGAGTTCAGGTATGGAGGTTTCTCTCTGGGCAGTAAAAGCTCACAGGGTCAGACAGATATCCATCAGCTAGAGCAGTCTGTAATGGCTATAAGAACACGCTACAAAATAGCACAGAACGGCTCACTGGATCAACTTTTGGACAGATTACCAGGCCTTCTTACTGGGCTTAGTAGTCAAAATAATGTTAAGGTATGGTTTAATAATAAAGGTTGGCATGCCATGGTGTCATTTGTGAACATCATGAACAATGGACTGCTCCGTGCCAGTCTTCCTCCAGGACCAGACAGAAGGAAACATGGAATAACAGCCTATAATCATCCACTTAACCTCACCAAGGAGCAGCTCACCGAGTTTGCCTTaaTGACCACCTCAGTGGATGTCTTGGTGTCCATATGTGTGATTTTTGCCATGTCCTTTGTACCAGCAAGTTTTGTACTGTTTCTGATCGAGGAGAGGGTCAGCAAGTCTAAGCACCTTCAGTTTGTTAGTGGGGTCAAACCCATTCTGTATTGGACTGCAAACTTTGTTTGGGACATGTTGAACTACACGGTTCCTGCTACCATGGTGGTCCTCATCTTCATAAGCTTCCAACAGCAGTCTTATGTCTCTGAAAAAAACCTTCCTGCGCTAGTGCTTCTTCTCTTGTTCTATGGTTGGTCCATCACTCCTCTAATGTACCCTGCCTCGTTCGTGTTCTCTGTGCCCAGCACAGCCTATGTGGTGCTCACCTCCATCAACCTTTTCATCGGCATCAATGGCAGCATAGCCACCTTCGTCCTCGAGCTCTTTGTTGATGAACATTTAAATGAGGTCAACAGGATCCTCAAGAAGGTCTTTTTGATCTTTCCTCACTTCTGTCTGGGTCGAGGTCTTATTGACATGGCTAAAAACCAGGCAATGGCAGATGCTTTCCAGAGGCTTGgAAACACGCAGACACTGGAGCCACTGGCATGGGATTTTGTAGGGAAGAACTTGTTTGCTATGGCAGTCGAGGGCGttgtcttcttcattttcactgtaCTGCTTCAGTACAAGTTCTTCATACACTTCAGAATGTGGTCTGATCCTGTCCTGCCACCACTGGGCCCAGAGGATGAGGACGTAGCAAATGAAAGAGAACGTGTGAAAAGCAACAAAACTCAGGACAATATTCTTATTGTCAGAGACCTGAGCAAGGTCTATAAGGCAGGCAAGAGGCCAGCAGTGAACCAGCTTTGTCTTGGCATTCCTCGGGGAGAGtgctTTGGGCTTCTTGGGGTTAATGGGGCTGGGAAGACTTCCACTTTTCGCATGCTGACAGGAGACACCACCATTACCtatggagatgcttttctcaaCAATTACAGTGTGCTGAATGACATGGACAGAGTACATCAGCTAATGGGCTACTGTCCTCAGTTTGATGCCATCAATGACCTTTTGACTGGAAGAGAGCACCTAGAGTTCTATGCTCGATTGAGAGGAGTCCCTGAGCCATATGTAGCAAAGGTCTCACAGTGGGGAGTAAAAAAACTGGGACTGACACAGTATGCTGAGCAAGAAGCAGGAGGATACAGTGGAGGCAATAAACGCAAACTCTCAACTGCCATTTCTCTCATCGGAGCACCACCAGTTGTTTTTCTGGATGAGCCCACAACAGGAATGGATCCAAAGGCTAAGCGCTTCTTGTGGAACTGTATCCTCAGCGTCATCAAAGAAGGCCGAGCTGTTGTTCTCACATCCCACAGTATGGAAGAGTGTGAAGCTCTCTGCACTCGCATGGCCATCATGGTCAATGGGAGGTTCCAGTGTCTGGGTTCAGTGCAGCACCTCAAGAACagATTTGGCGATGGGTATACAATTATCCTCCGCTTGTCTGCACCATCTCCGGATTCCTGCCCCGTGAATGCCTACATCCAGAACTGCTTTCCTGGAATCAAGCTGAAGGAGAGACACCACAACGTTCTGCAGTATCAGCTGCCAACTCACGCCTGCTCCCTCGCTCATGTGTTCGACATTCTGTCAAACAACAGCGAAGAGCTGGGAATAGCGGAATATTCCGTCTCTCAGACCACACTGGACCAGgtgtttgtcaaCTTCGCGAAGGAGCAGATGGATGACGATGACCAACTCAGAGAGGTGGCTATAAACAGTGGATCAGATGCAACTCAATCCCGCACACCTCAGCAATCCAGTCAAACTATATATCCATCGCTAACAACTTCTTTTGAACCTAAAAGATCAGTGTCTCAAGTTACTGCTGCTCAGTCACCCCATCCGTTATCATCATCCCAATCCAGTCAGCCAGGAGCTGCATGGTCAAAGACTAAAGAGAGCAAATGTAGCAAAACAAAGCAACCTCAGCAAATACAAATGCAGCCTCTAATGGATTTCTCAGCTAATGGATTAAAGTGCACAGAAGAAGAGAAATCTCAGAGCAAAGACCTTACCAAGCTTTTTATAGTCAAGACATGAATGACCTCTCGGTCTCAAATCTTGATGTTCTGcttgattttaatatttagtttaATCTGTATTTGTCTCAAACTACCTTTCATGTATTGAAGATATTGAGTACTCTCAGGACCACTCTGTTAAATTGTCTGAACACTGCTGTATGATGCTAATTGCACTTTACATCCTGTATGTCTTGTGCAAGTCAATTTGTTGACAAATCTTATTTACTTGGAAGTTTATTATATGATTTTAGAATTTCTTTTCATAATTATCTGCAAGTCTGTAAATCACGTGTTATAATCAGAATCTGCCTTCATCAAGTCAGCCTTTTTCTATTcagatgtttctgtttttaaaaggttttagaCAAATTGTGCACCTCTGATGCACATTGGCATAAAAGGAGCTGTAAAACTAAACTCTAAGATGCACTTAGGAAAATGATGAATACTGTGTCATTGGAATGTAttcataaatcaaaaatatcattttaaatgatggAAATTGTATATTGCATATGTAAAGTGATATTTACTGAAATGTGCAGTTTCTCTGAGTACATGtagaagaaaaatgcaaatgcattcAAGTTCACAACTACGTGAAAGTATAAGGTGTTTGTGCAAATTAATTTTGCACAGACCTCCACTGTCTCCTCCATTGGCTgcatgaaaatatatgaataattcTCCATTGAGTTTCTCCAttgtaacaataaaaatacaataagacAACATCTTACACATCTgcacttttttgctttttgcatgCAAGTATTCAAATACAGCTGCACATTCAGTATTTGTGTCATTTTACAagtgtaaattaatttaaactcCGTGTTATtgcacttattatttatttctatatatttttaagaacattaataaatgtataagtCAAGTACAAGCacaacattt

Function

NR:

description
ATP-binding cassette sub-family A member 1-like isoform X2

GO: NA

KEGG:

id description
K05643 ABCA3; ATP-binding cassette, subfamily A (ABC1), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922544.2 True 8037 mRNA 0.47 51 19555712 19584739

Neighbor

gene id symbol gene type direction distance location
LOC117595669 pex11g coding upstream 24025 19527046 ~ 19531687 (+)
si:ch73-40i7.2 LOC108271407 coding upstream 30715 19509033 ~ 19524997 (+)
slc35e1 slc35e1,LOC107750991,LOC107752163 coding upstream 50611 19498363 ~ 19505101 (+)
LOC113535100 med26 coding upstream 59811 19490432 ~ 19495901 (+)
crtc1b crtc1,LOC107747695 coding upstream 97538 19442164 ~ 19458174 (+)
r3hdm4 r3hdm4,LOC107750993,LOC107592851,LOC107661084 coding downstream 2589 19587328 ~ 19597392 (+)
LOC113531697 kiss1r coding downstream 14524 19599263 ~ 19605614 (+)
arid3a arid3a coding downstream 22708 19607447 ~ 19638191 (+)
ctdspl3 LOC108270532,LOC108435930,LOC107597167,LOC107757917,LOC107685268 coding downstream 57486 19642225 ~ 19648916 (+)
ndufs7 ndufs7,LOC107680537,LOC107747413,LOC107597168,LOC107685366,LOC107553547 coding downstream 68099 19652838 ~ 19659420 (+)
G184503 NA non-coding upstream 92869 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 94022 19459818 ~ 19461690 (+)
G184340 NA non-coding upstream 474227 19081252 ~ 19081485 (+)
G184309 NA non-coding upstream 543100 19012407 ~ 19012612 (+)
G184167 NA non-coding upstream 660837 18891239 ~ 18894875 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding downstream 76353 19661092 ~ 19664491 (+)
G184718 NA non-coding downstream 118896 19703635 ~ 19704250 (+)
G184823 NA non-coding downstream 223974 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 336732 19921471 ~ 19947483 (+)
G184900 ndufa11 non-coding downstream 369855 19954594 ~ 19955040 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other upstream 743 19532081 ~ 19554969 (+)
LOC113546543 NA other upstream 7500 19526877 ~ 19548212 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 67928 19486328 ~ 19487784 (+)
adgrl4 adgrl4,LOC102783218 other upstream 285451 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 1146655 18166622 ~ 18409057 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 110488 19695227 ~ 19700274 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 243247 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 251406 19836145 ~ 19845238 (+)
ccl44 LOC108271213 other downstream 281059 19865798 ~ 19871463 (+)
G184979 NA other downstream 565232 20149971 ~ 20150894 (+)

Expression


Co-expression Network