LOC113531697 (kiss1r)


Basic Information

Item Value
gene id LOC113531697
gene name kiss1r
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19599263 ~ 19605614 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922559.2
ACAAACACCAGTGTCCGGGTGACATGGAGGTACTACTACTCTACAGCAGTGGTACAGCCTACTTTCCTCACAGTATTTTGATTGCAATTAGCACCGGTGCCAGTTAAGGATAAAAATCTACAATGAATGGTTCAGTTAATTCTACCAATGAGTCTTGTGCTGCTCGGGCTGTGTGTGAGGAAGACGCGCGCGCTCCCGCGATTCCCTACCTGGTGGACGCCTGGCTCGTGCCGCTGGTCTTCGCGCTCATCATGGTGCTGGGACTGTTTGGAAATTCCCTGGTTCTGTATGTGATTTCtaaacacaagaaaatgtggACAGCGACAAATATCTATATAGCTAACCTGGCGATGACGGACATCACCTTTCTGGTTTGCTGTGTGCCTTTCACTGCTGTGCTTTATCCGTTACCAAGCTGGATCTTTGGAAATTTCATGTGTAAATTTGTCAGCTACATCCAACAGGTATCTGCACAGGCCACTTGTGTAACACTGACAGTGATGAGTGTGGATCGCTGGTACGTCACTGTGTATCCGCTGCGCTCCTTGCAGTGTCGTACACCGAGAGTTGCCACCATGGTGAACCTGGGAATCTGGATAGGATCTTTCTTGGTGTCCCTGCCAGTGCCACTGTACACAAGGACTTTAGCTGGAGAATGGTTTGGTCCTCAGGTATTCTGCACGGAGATTTTTCccacaacaacacacaagaAAGCCTTCATCCTATACAACTTCCTGGCTGTGTATATGCTCCCGCTGGTgactatctgtgtgtgttatctggTCATGTTGTACCAGATGGGCCGGCCAGCTGTGGAGCCTGTTGACAATAATTATCAGCTCCAGGTTCAGACAGAGCGCAGCGCTGCTGTAAGAGCTAAAGTGTCCCGTATGGTGCTGGTGATTGTACAGCTGTTTATTCTGTGCTGGGGTCCCATCCAGCTGTTCATCCTGGCGCAGGCATTTAGCCCACACTTCCGTCAGGACTATTACACATACAAAGTGAAGATATGGGCACACTGCATGTCCTACAGCAACTCGTGCATTAATCCCATAGTCTACGCCTTCATGGGTGCCAACTTCCGCAAGGCCTTCAAGAAAACTTGCCATTGCTGTTTCAAACAGCGGGTAAATATCGCCCAACTGCCAAACGCAAATGGAAACACTGAGATGCACTATGTGTCATAGAGTAGAtctctttcctctgtgtgtgtgtatgtgtgtgtgtaggtgtttagGTTaaggatatattttttttaggtttaagCATAGTAGCAATGGGACATACTTCAGATGGCCATTAAAGCTGACTTCTTGTTACGCTcaatttaaactttaattcTAAATTTAAAGTACGAAAAGGCGCAAGTAAGTCTTGTACCAAAAGGCTTGTACTGCACTGATCGGGCTGTGAAGGAAGAAGACAGAGAAATGCCATTGGACGTCAGGCCTTCTACTTGGGTTACCTCAAATAGTATGGACTAGT

Function

symbol description
kiss1r Enables neuropeptide receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within negative regulation of cell migration; negative regulation of cell population proliferation; and signal transduction. Located in cilium; intracellular membrane-bounded organelle; and plasma membrane. Is integral component of membrane. Implicated in central precocious puberty 1; hypogonadism; and hypogonadotropic hypogonadism 8 with or without anosmia. Biomarker of breast cancer; papillary carcinoma; and transitional cell carcinoma.

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function

KEGG:

id description
K08374 KISS1R; KISS1 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922559.2 True 1485 mRNA 0.47 5 19599263 19605614

Neighbor

gene id symbol gene type direction distance location
r3hdm4 r3hdm4,LOC107750993,LOC107592851,LOC107661084 coding upstream 1871 19587328 ~ 19597392 (+)
zgc:172302 LOC108271263 coding upstream 14524 19555712 ~ 19584739 (+)
LOC117595669 pex11g coding upstream 67576 19527046 ~ 19531687 (+)
si:ch73-40i7.2 LOC108271407 coding upstream 74266 19509033 ~ 19524997 (+)
slc35e1 slc35e1,LOC107750991,LOC107752163 coding upstream 94162 19498363 ~ 19505101 (+)
arid3a arid3a coding downstream 1833 19607447 ~ 19638191 (+)
ctdspl3 LOC108270532,LOC108435930,LOC107597167,LOC107757917,LOC107685268 coding downstream 36611 19642225 ~ 19648916 (+)
ndufs7 ndufs7,LOC107680537,LOC107747413,LOC107597168,LOC107685366,LOC107553547 coding downstream 47224 19652838 ~ 19659420 (+)
dazap1 dazap1,LOC107685225 coding downstream 70602 19676216 ~ 19691780 (+)
gtpbp3 gtpbp3 coding downstream 141268 19746882 ~ 19764051 (+)
G184503 NA non-coding upstream 136420 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 137573 19459818 ~ 19461690 (+)
G184340 NA non-coding upstream 517778 19081252 ~ 19081485 (+)
G184309 NA non-coding upstream 586651 19012407 ~ 19012612 (+)
G184167 NA non-coding upstream 704388 18891239 ~ 18894875 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding downstream 55478 19661092 ~ 19664491 (+)
G184718 NA non-coding downstream 98021 19703635 ~ 19704250 (+)
G184823 NA non-coding downstream 203099 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 315857 19921471 ~ 19947483 (+)
G184900 ndufa11 non-coding downstream 348980 19954594 ~ 19955040 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other upstream 44294 19532081 ~ 19554969 (+)
LOC113546543 NA other upstream 51051 19526877 ~ 19548212 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 111479 19486328 ~ 19487784 (+)
adgrl4 adgrl4,LOC102783218 other upstream 329002 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 1190206 18166622 ~ 18409057 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 89613 19695227 ~ 19700274 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 222372 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 230531 19836145 ~ 19845238 (+)
ccl44 LOC108271213 other downstream 260184 19865798 ~ 19871463 (+)
G184979 NA other downstream 544357 20149971 ~ 20150894 (+)

Expression


Co-expression Network