nr2f6b (nr2f6,nr2f6b,LOC107680506,LOC107747262)


Basic Information

Item Value
gene id nr2f6b
gene name nr2f6,nr2f6b,LOC107680506,LOC107747262
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19799656 ~ 19808358 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922974.2
gagagagagagagagagagaagggtggggggaagtgagagagagaaggagggagggaaagagaaagagagagaaacagagcaggGTCTGTTGACCACAGAGGCTGGTTGATCTTTCCTCTGTCCTTCATCCGTGGCCAAACGGCGCTGACTTCCTCTATTCGCTTTCACCAAAGGGACAGAAAGACggaaggagaaagaagaaaagcgGAAACGGTTTCACAGTGGCTTCCGGGAACGCAGGGGCGAGCTGAAGCCCTGGAGCTGTTACTGCTGGATGGGCAAGTGCTGACAAAACAAGGCGAGGGAGGGACACTCGAGACACACGGACGCTTGCAGATCTAAGATTCCTCCTTTTTCACAGACCTTGCCCTCTTAATCGATGTTTGAATCCCATGCTCTTCTTTGAAACTGACGCAAGAGTGTACGTTGAAGCGAGAAGATCTGAGCCTGGGTTTCCCAACAGGACAGAaagggtgtgtgcgtgtgtgtgtttgtatgtgagagagatagaggggaCTTCCTTGAACTTTGATCCTTCATAGGGAGGGCTGAAAGAGAGCTCTGTTTATCATTAGCAGGCTTTGTCTCTTTCCCTTCTTGGTAGCTTTGAATGTGAAGATTTATTGGAACCGGATTCTTGTAGTAGTTTTGGACATGTGTACTTTATTTGGTGAGATATTACTGTAGCCATTGATGAGCAAAAACTCATTTTctgctttaaattttttttttgttttaactgtgTTCTTTTAAAATAGTGGGAACAGAGATTGCTAGCgctgcaaaacacacagcaagaaCAGGTTTGACTTGTTAGTGACCTGTGGGCAGGGCAACTGTCTCATGCACGGCTCCTAAAGCGGCACAAGGTTTGTTAATGCTCGCTGGCTGAGATGAGGCATTTCGGTTCTTCTTAAGAGGCGCTTTACTTTTGCCCCAGTTTCGGAGTCGCAGGGCTGTGCATGTTTATGTGTAATTTATAGTTTCCTGTAAAGGGCCAGGCTGTATGTTACTCACTCTTGACTGAACTCTGAACCACTTGGTGAAGCAGACGTTCTTCGAGAGCCCTGGAGGATTACTTTTAAGTTAAACCTGAGTTTTAAGATCACTAGGACTACAGAAAACAGGCCTGCAAAACCGAAGAACATTTGCTGATCAACCGTTGACTGTCTGAAAGGCCGATTTTTGAAAGGGCCGTCAGATTTAGGCCGTGTAAACGTTTGAGGACCTCGTGTCACTGTTTACTTTTCTCCTTCCACACTCGAGAAGCTTGAGGTTAATGTCTGCAGTGTgaactctcacacacaatctCAGGCAAGTCTGAATACTTACTGCTGGGAGTGGATTTCGTTAAAAAAAAGCCCTGGTGGTGCACACAGCGATGGCCATGGTGGGTGGGGGATGGGGCAACCCTAATGGGAGCACCAATGGCCTGGGGGAGAAGGGCTACCTGCGGGGGGAGGAGGACGAGAGCTCTCCCCAGGCAGGGAACAGCGATGCCGAGGGCGGAGAGGATGACAAGGCCTGCGTGGTGGACTGTGTGGTGTGCGGTGACAAGTCCAGCGGGAAGCACTACGGCGTCTTCACCTGCGAGGGCTGCAAGAGCTTCTTCAAGAGGAGCATCCGTCGCAACCTTAGCTACACATGCAGaTCAAATCGAGAATGTCAGATTGATCAACATCATCGCAACCAGTGTCAGTACTGCCGTCTGAAGAAATGCTTTCGTGTGGGCATGAGAAAAGAAGCAGTCCAGCGTGGACGTATTCCTCCATCACACTCAGGTATCAGCCCAACCTCCATGGTTTCTGCTGGTGGAGGTGGGCCTGGAGGACCAGGCATGGCTGGTGACTTTTTCAATGGTCAGCCGGCACCCGAGCTTATCTCACAGCTCCTGAGAGCTGAACCCTACCCCAGCAGCCGCTACGGAGCTCAGTGTGGTCAACAGTTGCCTGGAGGCCATGGCTCCGTCATGGGCATCGACAGTATTTGTGAGCTGGCTGCCCGACTCCTCTTCAGCACCATTGAGTGGGCCCGGAACATTCCCTTCTTCCCTGACTTACCTGTCTCGGAGCAAGTGGCCCTGCTGCGCCTCAGCTGGAGCGAACTGTTCATCCTGAATGCAGCACAATCAGCCCTGCCTCTACACATGGCCCCCCTGCTAGCTGCCGCTGGCTTCCACGCTTCCCCCATGTCTGCTGAGCGTGTGGTCTCCTTCATGGACCAGGTGCGAGTCTTCCAGGACCAGGTGGATAAGCTCACACGACTACAGGTGGACTCTGCTGAATACAGCTGCCTCAAAGCCATAGCCCTATTTTCACCAGATGCATGTGGACTGACAGACCCAGCCCACGTGGAGAGTCTTCAGGAGAAGGCTCAGGTGGCTCTGACTGAGTACGAACGCATGCAGTATCCGACTCAACCACAGCGCTTCGGTCGCCTCCTTCTCCGCCTGCCCTCACTGAGAGCTGTCCCCGCAAACCTCATATCTCAGCTCTTCTTCATGCGACTGGTGGGCAAGACGCCCATCGAGACACTCATTCGAGACATGCAGCTCTCTGGCAGCTCCATTAGCTGGCCTTATGTGCCTGGACAGTAGCTGGGTTGGACACCCTGTGAGCAGACAACAGTCAGCCACTCAAACTTTGACTTTCATGTTCTGTGTGGGCTTATAGGATTGTGATATGTAATTTCCTTTTAGTTGCTGCGAGAATATTCTTGTTGTGTTGCAGCATCTCATTGCTCATTAGTGTACATGGAGAAGGATGGCCAAAGGTCAATATGCTGTCACATGTCCTTGGGCAGATGAATAGCGTCACTTGATTTTGGGATACCTCAGGTTTTTTACGTAAATCGCAGAACTTATAGAGGTGACTCTATTGTAAATGCATAAGCACAGTGACAGATCATTGACAAGAAACTATGACTAGTAAAGGAAAATACAATACATTTATGGCATTGCATTCAGAGATATATCTCAACGCTGTGATATATGACTGATCCAGGTCCAGCTTTAAACAATTACAGGAATGTTCCTGCTATACCTAAGAATAATTACTATTTCAATTATAACAATTGATTATGTAGTTTAGACAAATTAACCTACTCATGAAGGTATTGCCATGGACTGCAGTGCTACTTACTTGAGAAATCAGTGGTGAATATGTATTGTAAAATGTGATGgtcacattgtttaaaaaagctCTATGTACTCTTACTTAATTGGGTCCAAAAATTTTTCATATTGTCGGCCATGAAAAATATCCGATATTTTTGCATACGAATAATTAAAAAGCATTCATCCAAACACTCTGAA
>XM_026922981.2
gagagagagagagagagagagaagggtggggggaagtgagagagagaaggagggagggaaagagaaagagagagaaacagagcaggGTCTGTTGACCACAGAGGCTGGTTGATCTTTCCTCTGTCCTTCATCCGTGGCCAAACGGCGCTGACTTCCTCTATTCGCTTTCACCAAAGGGACAGAAAGACggaaggagaaagaagaaaagcgGAAACGGTTTCACAGTGGCTTCCGGGAACGCAGGGGCGAGCTGAAGCCCTGGAGCTGTTACTGCTGGATGGGCAAGTGCTGACAAAACAAGGCGAGGGAGGGACACTCGAGACACACGGACGCTTGCAGATCTAAGATTCCTCCTTTTTCACAGACCTTGCCCTCTTAATCGATGTTTGAATCCCATGCTCTTCTTTGAAACTGACGCAAGAGTGTACGTTGAAGCGAGAAGATCTGAGCCTGGGTTTCCCAACAGGACAGAaagggtgtgtgcgtgtgtgtgtttgtatgtgagagagatagaggggaCTTCCTTGAACTTTGATCCTTCATAGGGAGGGCTGAAAGAGAGCTCTGTTTATCATTAGCAGGCTTTGTCTCTTTCCCTTCTTGGTAGCTTTGAATGTGAAGATTTATTGGAACCGGATTCTTGTAGTAGTTTTGGACATGTGTACTTTATTTGGTGAGATATTACTGTAGCCATTGATGAGCAAAAACTCATTTTctgctttaaattttttttttgttttaactgtgTTCTTTTAAAATAGTGGGAACAGAGATTGCTAGCgctgcaaaacacacagcaagaaCAGGTTTGACTTGTTAGTGACCTGTGGGCAGGGCAACTGTCTCATGCACGGCTCCTAAAGCGGCACAAGGTTTGTTAATGCTCGCTGGCTGAGATGAGGCATTTCGGTTCTTCTTAAGAGGCGCTTTACTTTTGCCCCAGTTTCGGAGTCGCAGGGCTGTGCATGTTTATGTGTAATTTATAGTTTCCTGTAAAGGGCCAGGCTGTATGTTACTCACTCTTGACTGAACTCTGAACCACTTGGTGAAGCAGACGTTCTTCGAGAGCCCTGGAGGATTACTTTTAAGTTAAACCTGAGTTTTAAGATCACTAGGACTACAGAAAACAGGCCTGCAAAACCGAAGAACATTTGCTGATCAACCGTTGACTGTCTGAAAGGCCGATTTTTGAAAGGGCCGTCAGATTTAGGCCGTGTAAACGTTTGAGGACCTCGTGTCACTGTTTACTTTTCTCCTTCCACACTCGAGAAGCTTGAGGTTAATGTCTGCAGTGTgaactctcacacacaatctCAGGCAAGTCTGAATACTTACTGCTGGGAGTGGATTTCGTTAAAAAAAAGCCCTGGTGGTGCACACAGCGATGGCCATGGTGGGTGGGGGATGGGGCAACCCTAATGGGAGCACCAATGGCCTGGGGGAGAAGGGCTACCTGCGGGGGGAGGAGGACGAGAGCTCTCCCCAGGCAGGGAACAGCGATGCCGAGGGCGGAGAGGATGACAAGGCCTGCGTGGTGGACTGTGTGGTGTGCGGTGACAAGTCCAGCGGGAAGCACTACGGCGTCTTCACCTGCGAGGGCTGCAAGAGCTTCTTCAAGAGGAGCATCCGTCGCAACCTTAGCTACACATGCAGaTCAAATCGAGAATGTCAGATTGATCAACATCATCGCAACCAGTGTCAGTACTGCCGTCTGAAGAAATGCTTTCGTGTGGGCATGAGAAAAGAAGTCCAGCGTGGACGTATTCCTCCATCACACTCAGGTATCAGCCCAACCTCCATGGTTTCTGCTGGTGGAGGTGGGCCTGGAGGACCAGGCATGGCTGGTGACTTTTTCAATGGTCAGCCGGCACCCGAGCTTATCTCACAGCTCCTGAGAGCTGAACCCTACCCCAGCAGCCGCTACGGAGCTCAGTGTGGTCAACAGTTGCCTGGAGGCCATGGCTCCGTCATGGGCATCGACAGTATTTGTGAGCTGGCTGCCCGACTCCTCTTCAGCACCATTGAGTGGGCCCGGAACATTCCCTTCTTCCCTGACTTACCTGTCTCGGAGCAAGTGGCCCTGCTGCGCCTCAGCTGGAGCGAACTGTTCATCCTGAATGCAGCACAATCAGCCCTGCCTCTACACATGGCCCCCCTGCTAGCTGCCGCTGGCTTCCACGCTTCCCCCATGTCTGCTGAGCGTGTGGTCTCCTTCATGGACCAGGTGCGAGTCTTCCAGGACCAGGTGGATAAGCTCACACGACTACAGGTGGACTCTGCTGAATACAGCTGCCTCAAAGCCATAGCCCTATTTTCACCAGATGCATGTGGACTGACAGACCCAGCCCACGTGGAGAGTCTTCAGGAGAAGGCTCAGGTGGCTCTGACTGAGTACGAACGCATGCAGTATCCGACTCAACCACAGCGCTTCGGTCGCCTCCTTCTCCGCCTGCCCTCACTGAGAGCTGTCCCCGCAAACCTCATATCTCAGCTCTTCTTCATGCGACTGGTGGGCAAGACGCCCATCGAGACACTCATTCGAGACATGCAGCTCTCTGGCAGCTCCATTAGCTGGCCTTATGTGCCTGGACAGTAGCTGGGTTGGACACCCTGTGAGCAGACAACAGTCAGCCACTCAAACTTTGACTTTCATGTTCTGTGTGGGCTTATAGGATTGTGATATGTAATTTCCTTTTAGTTGCTGCGAGAATATTCTTGTTGTGTTGCAGCATCTCATTGCTCATTAGTGTACATGGAGAAGGATGGCCAAAGGTCAATATGCTGTCACATGTCCTTGGGCAGATGAATAGCGTCACTTGATTTTGGGATACCTCAGGTTTTTTACGTAAATCGCAGAACTTATAGAGGTGACTCTATTGTAAATGCATAAGCACAGTGACAGATCATTGACAAGAAACTATGACTAGTAAAGGAAAATACAATACATTTATGGCATTGCATTCAGAGATATATCTCAACGCTGTGATATATGACTGATCCAGGTCCAGCTTTAAACAATTACAGGAATGTTCCTGCTATACCTAAGAATAATTACTATTTCAATTATAACAATTGATTATGTAGTTTAGACAAATTAACCTACTCATGAAGGTATTGCCATGGACTGCAGTGCTACTTACTTGAGAAATCAGTGGTGAATATGTATTGTAAAATGTGATGgtcacattgtttaaaaaagctCTATGTACTCTTACTTAATTGGGTCCAAAAATTTTTCATATTGTCGGCCATGAAAAATATCCGATATTTTTGCATACGAATAATTAAAAAGCATTCATCCAAACACTCTGAA

Function

symbol description
nr2f6b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; axis; gut; mesoderm; and nervous system. Orthologous to human NR2F6 (nuclear receptor subfamily 2 group F member 6).
nr2f6 Enables DNA-binding transcription factor activity and sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus.

NR:

description
nuclear receptor subfamily 2 group F member 6 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08549 NR2F6, EAR2; nuclear receptor subfamily 2 group F member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922974.2 True 3314 mRNA 0.48 4 19799658 19808358
XM_026922981.2 False 3313 mRNA 0.48 4 19799656 19808358

Neighbor

gene id symbol gene type direction distance location
ushbp1 ushbp1 coding upstream 3488 19781228 ~ 19796168 (+)
gtpbp3 gtpbp3 coding upstream 35605 19746882 ~ 19764051 (+)
dazap1 dazap1,LOC107685225 coding upstream 107876 19676216 ~ 19691780 (+)
ndufs7 ndufs7,LOC107680537,LOC107747413,LOC107597168,LOC107685366,LOC107553547 coding upstream 140236 19652838 ~ 19659420 (+)
ctdspl3 LOC108270532,LOC108435930,LOC107597167,LOC107757917,LOC107685268 coding upstream 150740 19642225 ~ 19648916 (+)
pole4 pole4,LOC106613703,LOC107685140 coding downstream 46327 19854685 ~ 19860286 (+)
ctns ctns coding downstream 95800 19904158 ~ 19911209 (+)
LOC113535596 vmac,LOC107680554 coding downstream 151343 19959701 ~ 19964557 (+)
gadd45ba gadd45b,LOC107553537,LOC107597151,LOC107757925 coding downstream 161199 19969557 ~ 19971347 (+)
apc2 apc2 coding downstream 268255 20076613 ~ 20103052 (+)
G184718 NA non-coding upstream 95406 19703635 ~ 19704250 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding upstream 135165 19661092 ~ 19664491 (+)
G184614 NA non-coding upstream 197017 19548663 ~ 19602639 (+)
G184503 NA non-coding upstream 336813 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 337966 19459818 ~ 19461690 (+)
G184823 NA non-coding downstream 355 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 113113 19921471 ~ 19947483 (+)
G184900 ndufa11 non-coding downstream 146236 19954594 ~ 19955040 (+)
G184988 NA non-coding downstream 456578 20264936 ~ 20265620 (+)
G184987 NA non-coding downstream 457350 20265708 ~ 20320904 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 99382 19695227 ~ 19700274 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other upstream 244687 19532081 ~ 19554969 (+)
LOC113546543 NA other upstream 251444 19526877 ~ 19548212 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 311872 19486328 ~ 19487784 (+)
adgrl4 adgrl4,LOC102783218 other upstream 529395 19254931 ~ 19270261 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 19628 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 27787 19836145 ~ 19845238 (+)
ccl44 LOC108271213 other downstream 57440 19865798 ~ 19871463 (+)
G184979 NA other downstream 341613 20149971 ~ 20150894 (+)
wipf2a LOC108270800 other downstream 1380890 21189248 ~ 21210539 (+)

Expression


Co-expression Network