nxph2b (LOC108270824)


Basic Information

Item Value
gene id nxph2b
gene name LOC108270824
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21616189 ~ 21622277 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923268.2
GCGCGTGCGACTAGCAGCTTTTAACAGCGAGCCGGCAGGAGGATCTGCAAGGAGGATCTGCAAGGAGGATCTGATGACTTTTTAACACTTGTGTTTTTGAACGCCAGTCTGCTACAAACCTCCTGTTCTGAGCATCAACATGCACGGAGTTGAGCTCCTGAAGATCAGCTTAATCAGTGGACCTGGTTTTTAATAACCACATTCATGTTAAAAGCTCTAAAGATGAAGCATCTTTCAGCTCTGCTGGTTTTGTGCTTGCACATGGTCATAAGTGAGGCAGAGCCCAGTGCAGCAGTAGGCCCGCTAGGATGGAGGGAAAACGATAAGGAAAAGAGCATTTCTCAGCATGGTTCACACTCAGATCTCCTCAAACCCCTGTGGCTTTTCTCACACCTGTCCTTAACCAGTGAAGCCCCCCAGCAGCTTGCAGTGCAAGACCTATGGGCCTGGCTGTTTAATCGCACAGAAGAGAGTGAACAGAGTCTGGCTAGAGCCAAGCGGCGGCCTATTGTCAAGACGGGCAAATTCAAGAAGATGTTCGGTTGGGGAGACTTCCATTCCCACATTAAGACAGTCAAGCTCAACCTACTCATCACAGGCAAGATTGTTGACCATGGCAACGGCACATTCAGTGTCTACTTCCGTCACAACTCCACAGGCCTTGGCAACGTGTCGGTGAGCCTGGTGCCACCCTCCAAGGTTGTCGACTTTGAGATCAGCCAACAGGAAACTCTGGACATCCCCAAAGACACCAAGTCCTTCAACTGCAGAGTGGAGTACGAGAAGACTGACCGGAGCAAGAGGACATCCTTTTGTACCCATGACACAGGCAGGGTGTGCTTCCAGGAACAGACGCAGAGCCACGTCTCCTGGCTCTGCTCCAAGCCCTTTAAAGTCATCTGCATCTACATTGACTTCTTCAGTGCTGACTACAAACTGCTGCAGAAAGTCTGCCCAGACTACAATTACCACAGTGACATGCCTTATACTTCAATGGGGTAGAGTTCCCGGATTGCCATGAGCTTAAATGTCTGTGGAGTTGAATTTCTGTCATCACAGCCCACCTTTCCTTGTTACCTTCTTGTGATGAGTGGGCAGAAGAAAGTAAACTACGCTGAAGGTACTGCTGTGAGCAAGCCTCACTGAAGGTTCAAGATTATTTTAAGGAAAAGAAtcttaaaaatctgtaaaacattcaaaaacCTAACATTTTGTCATGATTCACCTTTTGATAATGTTCcctgttttgcatgttctgaCCATTCTAAAATATTGTAAAAGTATTTGTAAATTTGATCTTCATCAGTACTTAGGTggacatacaaacatacatacatgcatacatacctTCTCACACTGACCTCATGAGTGTaacgttcattcattcactcattcacctTGAACCATGATTCCTTACcagattatatataaaataagaaaacagaTCATCTGTTTTTGATGTCCATTATGACATTACCCCTTAATTGTGTTCAGTGATGTCTTTATGTTGTATGCCAAGAGAGCAAGCTATGATGTGACACATTCTATAATCATAGTGAATACCCGCTCTTTCTGTACAATTCACTTtgatcattaaaaatgtgtgatcCCCAAACAA

Function

NR:

description
PREDICTED: neurexophilin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923268.2 True 1618 mRNA 0.45 3 21616189 21622277

Neighbor

gene id symbol gene type direction distance location
si:ch211-227n13.3 LOC108270813 coding upstream 897 21611776 ~ 21615292 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding upstream 10275 21561055 ~ 21605914 (+)
tbr1a LOC108270775 coding upstream 57187 21554701 ~ 21559002 (+)
psmd14 psmd14,psde,LOC107563735 coding upstream 63922 21532681 ~ 21552267 (+)
lgsn lgsn coding upstream 225983 21383873 ~ 21390206 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding downstream 134313 21756590 ~ 21770086 (+)
fam43a fam43a,LOC106573864 coding downstream 1510690 23132967 ~ 23135152 (+)
LOC117598438 NA coding downstream 1547606 23169883 ~ 23170911 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding downstream 1756404 23378681 ~ 23387676 (+)
kif14 kif14 coding downstream 1766793 23389070 ~ 23410114 (+)
G185751 NA non-coding upstream 55810 21560167 ~ 21560379 (+)
G185546 NA non-coding upstream 127662 21488324 ~ 21488527 (+)
G185533 NA non-coding upstream 149251 21466332 ~ 21466938 (+)
G185519 NA non-coding upstream 169709 21444384 ~ 21446480 (+)
G185503 NA non-coding upstream 206397 21407479 ~ 21409792 (+)
G185940 NA non-coding downstream 398571 22020848 ~ 22021059 (+)
G185997 NA non-coding downstream 759121 22381398 ~ 22381611 (+)
G186046 NA non-coding downstream 806581 22428858 ~ 22429104 (+)
G186060 NA non-coding downstream 933172 22555449 ~ 22899731 (+)
G186058 NA non-coding downstream 1268007 22890284 ~ 22942348 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 351134 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 405650 21189248 ~ 21210539 (+)
G184979 NA other upstream 1465295 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1744726 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1770951 19836145 ~ 19845238 (+)
trnap-agg_1 NA other downstream 336611 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 690165 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2585599 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 2941123 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 3909468 25531745 ~ 25696872 (+)

Expression


Co-expression Network