LOC113532271 (hrh4,LOC103041953,LOC107678092,LOC108424938,LOC107559824)


Basic Information

Item Value
gene id LOC113532271
gene name hrh4,LOC103041953,LOC107678092,LOC108424938,LOC107559824
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13379796 ~ 13397775 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923575.2
CACAGAGCTGTCGGTGTGTCGCCTCAGCTCCTCAGTCACCTGAGCTCTCAGAAAGCGAAGACGGTGTTTtttcttatataataataattttttccatataaatacatatttatttatatatattttcttctcGAATGGGAAAAAACGGGTCTCGATACTTTCGCCAGTCGGAAAATGAATTCTTTGTGAACATTTTCTAACATGCGGACTTTTTTGCTACAGTAAActatataaacatatactggtgaacttttttttttgacgacAGCGTTAAACaagttttgaaaataaatttggATGATTCATCCTCTTCAGGCAAAGGGAGAAAGGACACGTCGACGTGTTTAGAAAACGCACAATGTGTGTAAAGTCGCCTCGTGTGTTTGAGTTGACGGCAGCACGGAGTTGACCATGCTAACCTGCTTTTCTGGACACAGTAACTCGAGTGCTGAGCATGCGGGCATCGGCGGCGCCACCGTGCTCCTGGCCGCCTTAATGATGAGCCTGGTGGTCGTGGTGGTCGTGGGAAACGCGCTGGTCATCTTTGCCTTTGTCGTGGACAAGAGCCTCCGAAATCAGAGCAACTATTTCTTCCTTAACTTGGCTATATCTGATTTTCTGGTCGGGGCGTTCTGTATCCCAGTGTACATGCCCTACATCTTGACAGGCCGATGGATGCTGGGCCGTGGTCTCTGCAAGCTGTGGCTCGTGATGGACTATCTGCTCTGTACTGCCTCCGTCTTCAACATAGTCTTAATCAGCTATGACCGCTTCCTGTCTGTCACCAGAGCTGTGAGGTACAGAGCACAGCAGGGAATGACTCGGCTCGCTGTGGCAAAGATGCTAGCAGTGTGGCTGCTGGCTTTTCTCCTGTACGGCCCAGCCATTATCTTCTGGGAGGATGTAGCTGGTGAGAGCATCGTTCCGGCTGACGAGTGCTTTGCCGAGTTCTACTGCACGTGGTACTTCCTGCTTAGTGCATCTACCTTTGAGTTCTTCTCGCCGTTCATCTCAGTGACCTTCTTCAACCTCAGCATCTACCTCAACATCCAGCGGCGGAACAAGAGCCGCGCAGCTCACCGAGGCACAGAGAAGGAGGACGGCTGGAGGGTGGTGGACGGCGGCGCGTCACCCTCATCCACAGTCTTCTTTGTCAGGACGCGCAAAGTCTCCTCCAGTGAACCGGCGGCTGTTTCAGCGGTGATTGAGGAAGACATGGAGATTTCGCCGTCCTCCAGTGGAGACCCCAGCTGCAGCcactcagtttctctctctctgaagacAGTCAATAAGAAGAAAGGAGCGTGGAGCTGCTGGTTAAAGACACGCATGATCCAGGCACAGGCACCCTCGAGGAATGGGGAGCATTCACGTCTCTCGCGGGACAAGAAGATCGCCAAATCTTTGGCGGTAATAGTTTGTGTTTTCGGTGTGTGCTGGGCTCCGTACACCTTGCTCATGATCATTCGAGCAGCGTGTAGCGGCACATGTATAGAACATCACTGGTACGAAGTCACATTCTGGCTTCTTTGGCTCAATTCCGCCATCAACCCTTTCCTGTACCCTCTGTGTCACAGCAGCTTCCGCAGGGCTTTCACTAAGATCCTTTGCCCCAAACGGCAATCTGTCAGGCCGCACGAGGACACCCCATCCTGCCAGTGACAGCAGACAAGATTTCACACAGTCTGCGATTGTCAGTGGGGATTACGTGAGAATGTTGAGGCAGCAGCCTGTAAGATGCTCGTGTCTGACAAAATCAATGAGACCGTTGGCATCTTGCTTGTGTGGAGTGAAAAAGTTTCTCATTTCCcatagaaaaacattttcattttggattGCCTGTTTTCGTTTTTCAGAAATCCACATTGTCCTTGAAACCCTGTTACCTGGTGAAACTTTCTGAACGTTGGAAAGGAATAATGTTAAAAGTAATGCATGAGCATGTACAGTTCATTCCATCATCCTCTTGATTATCTTCCGTAACAAAGATGTGCATTCAGCTAGACAGAGCTTAGAGTGTAATAATGTGAAGGAAGccagagaaaaataaatcagttttctGGAGACTTTCTCTGCATCCCTTTGCAGCACTCTGAATGTAGTCTGGTGTTGTTTTTGAATGTGAGACAAACTGGTGTTAGTTTTGTCATTGCTAAGGAATGTGACGTGTTTTCACAGGTTTGATTTATAATTTGGAAGGACAGCAGAACTTGAGCAAATGTTCTGttgttttaatgtcattttaacaaataatgACAAATGGATTCCCAATTCAAGTGTGTATGGATGTCTGGACTCACATATGGTGTGTGATTGTATTGTTGGCACTTAAATAATGAATTGTGACAagggtgatttttaaaataatccttGTACATAGTTATATTTCCTCTGCTTCTCAACTGATTTGTTGTTT

Function

symbol description
hrh4 Predicted to enable G protein-coupled acetylcholine receptor activity and G protein-coupled serotonin receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; chemical synaptic transmission; and inflammatory response. Predicted to be located in membrane. Predicted to be active in dendrite and synapse. Predicted to be integral component of plasma membrane.

GO: NA

KEGG:

id description
K04151 HRH3; histamine receptor H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923575.2 True 2416 mRNA 0.46 3 13379796 13397775

Neighbor

gene id symbol gene type direction distance location
impact impact coding upstream 11538 13319943 ~ 13368258 (+)
cep19 cep19 coding upstream 66349 13308441 ~ 13313447 (+)
LOC117598427 NA coding upstream 99284 13277958 ~ 13280512 (+)
hsh2d NA coding upstream 284833 13088273 ~ 13094963 (+)
tpm4a tpm4,tpm4a,LOC108424981,LOC103036175,LOC107561904,LOC107665514,LOC107757474,LOC107715082 coding upstream 293865 13065988 ~ 13085931 (+)
rpl36 rpl36,LOC106560598 coding downstream 28895 13426670 ~ 13430143 (+)
ftsj3 ftsj3 coding downstream 51684 13449459 ~ 13461109 (+)
lim2.2 LOC108270866,LOC100701835,LOC102794991,LOC101061816,LOC101468118 coding downstream 64505 13462280 ~ 13468477 (+)
gipc3 gipc3,LOC108270865,LOC108424935,LOC100702370,LOC102212133,LOC107559818,LOC107678090 coding downstream 98903 13496678 ~ 13512874 (+)
ticam1 NA coding downstream 785444 14183219 ~ 14187331 (+)
G180833 NA non-coding upstream 77499 13299280 ~ 13302297 (+)
G180738 NA non-coding upstream 94726 13201871 ~ 13285070 (+)
G180695 NA non-coding upstream 176648 13136137 ~ 13203148 (+)
G180534 NA non-coding upstream 528617 12850960 ~ 12851179 (+)
G180516 NA non-coding upstream 538514 12836868 ~ 12841282 (+)
G180838 NA non-coding downstream 4112 13401887 ~ 13406255 (+)
G180926 NA non-coding downstream 50170 13447945 ~ 13448184 (+)
G180945 NA non-coding downstream 231920 13629695 ~ 13640963 (+)
G181136 NA non-coding downstream 699885 14097660 ~ 14100987 (+)
G181157 NA non-coding downstream 748098 14145873 ~ 14293381 (+)
G180834 NA other upstream 74080 13301255 ~ 13305716 (+)
trnag-gcc_17 NA other upstream 104240 13275486 ~ 13275556 (+)
trnag-gcc_16 NA other upstream 106179 13273548 ~ 13273617 (+)
trnag-gcc_15 NA other upstream 110067 13269656 ~ 13269729 (+)
trnag-gcc_14 NA other upstream 112019 13267707 ~ 13267777 (+)
G180936 NA other downstream 97815 13495590 ~ 13495985 (+)
G181175 uhrf1 other downstream 767251 14165026 ~ 14174218 (+)
LOC113531387 ctxn1 other downstream 824443 14222218 ~ 14240541 (+)
LOC113540185 NA other downstream 1163780 14561555 ~ 14563010 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other downstream 1192105 14589880 ~ 14599979 (+)

Expression


Co-expression Network