LOC113532286 (LOC108270593,LOC108430073,LOC107719667,LOC100332608,LOC107699403,LOC107593325,LOC107676991,LOC107586464)


Basic Information

Item Value
gene id LOC113532286
gene name LOC108270593,LOC108430073,LOC107719667,LOC100332608,LOC107699403,LOC107593325,LOC107676991,LOC107586464
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16858927 ~ 16862149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923600.2
CGCGCTGGTTAGAGGCTCGTTCAGCCTGAGTGAGATGAGCCGTTAGTGTGTGAGGTTCACCACAGGAGAGCTGTTACCAAAGCTCACAACAAAAGCCCAGCTGTGCTTCAGTGGGTCAGACCCTGAAGAATCATGTGGGTTCTGGAGAAAATCCGGAGCTCAGTGGAGAACAGTGCTCCTCGGCCAGGGGAGGCAGGAGACAAACAGGACAAAGCACCCATCTACAGCAACGTTCTCACACCTGATAAGATCCCGGACTTCTTCATCCCTCCCAAGCTGGTGAGCTGCCCACCAGAGACTGAAACACCAGACGTGAAGCCCAAGGAAGGTCTACAGCCTTCCACGTCAGAGCAGACCATTGGCAACAAAATTAGCAGCCCTCGAAGTCCTCGCCTGGTCAGCAAACTAGCTGGAGACACCAAAAACCTGCTAAGGGCTGCCAACCGTCACATCATTCAGATTGAGAGTGCGGATGATGTCGTTACTGGGGACACCAATGCTGACCCTCAGTCCCAGACAGCTATGTCTCTGTCATATATTCCAAAGACTCAGACCTCCTACGGATTTGCTACACTAATGGAGAGTCCCCACACTCGTCGGAAAGAGTCGCTCTTTCACTGTGACCACACAAGCCCAGTCACGTCTCCCAACACCCAACGCAAGTCGCCAGGCAAGACCACCATTGAAGTAAACCATCTGAACCCTCTGGATTTCAACACGTCCCACATCAACCCATATCGCTACTTTAGTGGGGGCGAGAGTGACACATGCTCCTCGGCTGAGTCCTCCCCTTTCAGCTCGCCCCTGCTGTCCcgctctgcctccttgctcAAGATCTTCACCCATGAGACTCAGGCTAAAGTGGTCAAAGCCAAGAGGACGTTCGCCCGGCACAGTTCGCTCTCCACGGATGAGTGCAGCTCCGCAGAGCCCAGCCCCAGCGTGCCCAGGAGGCTCCACTCTCCCGTAGGTGGCGGACCTCTGGACCATCAGCATGGGAAGGACAAACAGCAAAGGGAGCACATGGTCAACCTCCACAAGGGAGGTATGATCCGGCTCTGTGCTGATTATGACCCAGGAACGGCACGTTTGCGCATCCGCATCATTGCAGCTGAGGACCTTTATGACCAGACATTTGACATAAAGAGCATTAACTGCTGTGTGTCACTCTACCTCAACCCAGGCAAGCAGCAAAAGCAGAGAAGCACTATAATCAAGAACAGCCGCAATCCCGTCTTCAACGAGGACTTCTTTTTTGATTCTGTGAGCTTAGCTCAGGTGAAAAGCCTAGCTCTGAAGATCAAAGTGGTGAACAAGGGCACTAGCCTGAAAAGGGACAGCCTAGTAGGGGAGAGAGAGGTTCCTCTGGGGAAGCTGCTGCCTGGTCTTTAAGCCTGCATAAGGGCTTATGAGGGCTTAGTGCCTTGAAAGGAGGACTAATGTACCTTAAAGTAAATAGCTAATCCTGTTACCGTGTAGTATTAGCAGCAGTTCCTTTAGCAGTGACATATTTATTCATGACTTCAACTTACACGCTAGCTCAGCCTTTATAGTAagtatatgtataaatttaaatctGGTATGAATAGAAACGAAATTGTGTTTCCTCTTCATCATCTTTCATatattgtacaaaaaaaagtaccagtcaaaagattttgaaaaccctacattttagcatttttgcttaattttttgCCCATTTTAAATACTGCATAATATTTGAAAGTCTGACCAAGAAACAGGTTTGAGTGAATTGAGATATGAtagaaatgattattttattgaaacagTTAGGATCTTAGAGCAAGCAGTTAATAAACTGCACAAAGATTTAGG
>XM_034308535.1
CTTAAAATTTGATTGAATGACAAAAGCCCAGCTGTGCTTCAGTGGGTCAGACCCTGAAGAATCATGTGGGTTCTGGAGAAAATCCGGAGCTCAGTGGAGAACAGTGCTCCTCGGCCAGGGGAGGCAGGAGACAAACAGGACAAAGCACCCATCTACAGCAACGTTCTCACACCTGATAAGATCCCGGACTTCTTCATCCCTCCCAAGCTGGTGAGCTGCCCACCAGAGACTGAAACACCAGACGTGAAGCCCAAGGAAGGTCTACAGCCTTCCACGTCAGAGCAGACCATTGGCAACAAAATTAGCAGCCCTCGAAGTCCTCGCCTGGTCAGCAAACTAGCTGGAGACACCAAAAACCTGCTAAGGGCTGCCAACCGTCACATCATTCAGATTGAGAGTGCGGATGATGTCGTTACTGGGGACACCAATGCTGACCCTCAGTCCCAGACAGCTATGTCTCTGTCATATATTCCAAAGACTCAGACCTCCTACGGATTTGCTACACTAATGGAGAGTCCCCACACTCGTCGGAAAGAGTCGCTCTTTCACTGTGACCACACAAGCCCAGTCACGTCTCCCAACACCCAACGCAAGTCGCCAGGCAAGACCACCATTGAAGTAAACCATCTGAACCCTCTGGATTTCAACACGTCCCACATCAACCCATATCGCTACTTTAGTGGGGGCGAGAGTGACACATGCTCCTCGGCTGAGTCCTCCCCTTTCAGCTCGCCCCTGCTGTCCcgctctgcctccttgctcAAGATCTTCACCCATGAGACTCAGGCTAAAGTGGTCAAAGCCAAGAGGACGTTCGCCCGGCACAGTTCGCTCTCCACGGATGAGTGCAGCTCCGCAGAGCCCAGCCCCAGCGTGCCCAGGAGGCTCCACTCTCCCGTAGGTGGCGGACCTCTGGACCATCAGCATGGGAAGGACAAACAGCAAAGGGAGCACATGGTCAACCTCCACAAGGGAGGTATGATCCGGCTCTGTGCTGATTATGACCCAGGAACGGCACGTTTGCGCATCCGCATCATTGCAGCTGAGGACCTTTATGACCAGACATTTGACATAAAGAGCATTAACTGCTGTGTGTCACTCTACCTCAACCCAGGCAAGCAGCAAAAGCAGAGAAGCACTATAATCAAGAACAGCCGCAATCCCGTCTTCAACGAGGACTTCTTTTTTGATTCTGTGAGCTTAGCTCAGGTGAAAAGCCTAGCTCTGAAGATCAAAGTGGTGAACAAGGGCACTAGCCTGAAAAGGGACAGCCTAGTAGGGGAGAGAGAGGTTCCTCTGGGGAAGCTGCTGCCTGGTCTTTAAGCCTGCATAAGGGCTTATGAGGGCTTAGTGCCTTGAAAGGAGGACTAATGTACCTTAAAGTAAATAGCTAATCCTGTTACCGTGTAGTATTAGCAGCAGTTCCTTTAGCAGTGACATATTTATTCATGACTTCAACTTACACGCTAGCTCAGCCTTTATAGTAagtatatgtataaatttaaatctGGTATGAATAGAAACGAAATTGTGTTTCCTCTTCATCATCTTTCATatattgtacaaaaaaaagtaccagtcaaaagattttgaaaaccctacattttagcatttttgcttaattttttgCCCATTTTAAATACTGCATAATATTTGAAAGTCTGACCAAGAAACAGGTTTGAGTGAATTGAGATATGAtagaaatgattattttattgaaacagTTAGGATCTTAGAGCAAGCAGTTAATAAACTGCACAAAGATTTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923600.2 True 1839 mRNA 0.48 2 16858927 16862149
XM_034308535.1 False 1770 mRNA 0.48 2 16859207 16862149

Neighbor

gene id symbol gene type direction distance location
ap3d1 ap3d1,LOC107593327,LOC107676965,LOC107586409 coding upstream 11723 16814608 ~ 16847204 (+)
hdgfl2 hdgfrp2,LOC108270897,LOC108430101,LOC107676974,LOC107717991 coding upstream 44681 16801804 ~ 16814246 (+)
chaf1a chaf1a coding upstream 72728 16774458 ~ 16786199 (+)
unc13a LOC108270949,LOC108430111 coding upstream 208812 16606126 ~ 16650115 (+)
hmg20b hmg20b,LOC107586380,LOC107719660,LOC107655186,LOC107729671 coding upstream 256165 16597960 ~ 16602762 (+)
LOC113527868 LOC108271202,LOC108430096,LOC105011594,LOC107717982,LOC107699416,LOC106584406,LOC106613802,LOC107586405 coding downstream 50423 16912572 ~ 16947458 (+)
tle5 aes,LOC108271216,LOC108430095,LOC107593322,LOC107586404 coding downstream 87599 16949748 ~ 16975577 (+)
tle2b LOC108271164,LOC108430094,LOC107676970,LOC107719559 coding downstream 137956 17000105 ~ 17066956 (+)
trnak-cuu_26 NA coding downstream 167723 17029872 ~ 17029944 (+)
soul4 LOC108270966,LOC108411954 coding downstream 362277 17224426 ~ 17235688 (+)
LOC117598387 NA non-coding upstream 1790 16852408 ~ 16857137 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding upstream 133400 16708625 ~ 16725527 (+)
G182483 NA non-coding upstream 598611 16260058 ~ 16260316 (+)
G182190 NA non-coding upstream 849692 16006054 ~ 16009235 (+)
G182116 NA non-coding upstream 868517 15988630 ~ 15990410 (+)
G182906 NA non-coding downstream 98510 16960659 ~ 16961299 (+)
G182910 NA non-coding downstream 127170 16989319 ~ 16989519 (+)
G182932 NA non-coding downstream 217488 17079637 ~ 17083529 (+)
LOC113535983 NA non-coding downstream 554581 17416730 ~ 17423320 (+)
G183032 NA non-coding downstream 588308 17450457 ~ 17450736 (+)
G182819 NA other upstream 273984 16583303 ~ 16584943 (+)
LOC113532318 NA other upstream 602145 16255047 ~ 16256782 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 1184945 15668798 ~ 15673982 (+)
pdzk1ip1 NA other upstream 2147200 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 2209242 14622543 ~ 14649685 (+)
G182877 NA other downstream 51109 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 259750 17121899 ~ 17189315 (+)
LOC113528769 klc4 other downstream 334131 17196280 ~ 17222532 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other downstream 503549 17365698 ~ 17411425 (+)
LOC113536271 ankub1 other downstream 577647 17439796 ~ 17446248 (+)

Expression


Co-expression Network