si:ch211-227n13.3 (LOC108270813)


Basic Information

Item Value
gene id si:ch211-227n13.3
gene name LOC108270813
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21611776 ~ 21615292 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925444.2
GGTATCCAGCagggggacacacacacacacacatcatgacTGCTCAGCCTGTTTGTGCCATGAAGAAGAAGAGTGGCAGTAGCGGAGCTGTTTGAAAGCAGAGGTAGAGGAGTGCTGGGGATTTCTCTCAGGAATGATGCTGATGAAGCGGTAAATCCACGCTGTGAAACCAGACAGATTCATAATCCAGATGTGGGGATGGACTGCAGAAGGAAGAAAATAGCCTTACCTGTGGGGTCAAAGGCTGAAGATACACTGAAAACGCTCTGGATGACCAAAGACACTTCAGGCCACATGTGTTTATCTGACAGTCTGTCTAAGTCTTGTGCTGAGAGTCCACTGGACGGCTCAGGTTCTGAAGACTCTGTGGTGTCGGGCCCCAGCTCACCTTCTGCTGCCCTTCATTCACTGAGATGCAGGAAGTGTGAGAGACTTTTCTCCAAAATGAGGAGACAAGGGCctccaagaaaaaaacaaagagacgACGATCCAGCCTCGCTGTCATGTGACGAGTGGCTGCTTAATAAAACATGGCAGCCACAGAGACAGCAGCAACCCCGAGGGAGGTTATGGGTGCACTTGAAGCGCATCAGGCTACGAGCTGCAAAGCAGTCAGACGATGCCATGGCGAATAAAGCATGGTCACGCTCTGCTCGAGACCTCACGTGTTCCTGCAGAGGAACTTGCGTCGCTGCAAAAAGATGTTTGGAAAGCCATCTAAAAGCAAAGCGAAGCCACTCCATCAGCGGAGAAATCGAGCAAAACCTACATGGCCCCTGCGCAGTGCAAAatatcagagaaagaaaaggaagtcCTCAGAGAAAGACGATACATCGGAGCATCTTTCACCGGTGGATCTCGACATTCCCACGAAACATGATTTGCCTGCAAATGacaacactcacactcaccatGAGGGTTTGCAGCGGTTGGAGAAAGTTCCCAAGAACCAGTCTGTCAGTGATGTGAGTGGCTTGATGGACATCCAGGCTAATTGCAGTGGAGTGGAGGGAACTCGTAGGGTGCTGAAATTTGACGCTTCTCCCAGTGCTGTGCTAGCTGAAACACAGAAACCAAAGCACCGCCTTGTACATAAGAATGCAGGAGAAAAATTACATGAAGGCCAAGCAGATTTCACAGTGAAGAATAAAGATTGTCCCAGAAGGCTAGATGATGTTCTGTATGAGGATTTGGAGGTGTTTCGGACACCGACGGATCTCTTCAGTGCGGATTTGAAGATCAGCAGGAAGAGCAGGCCATCGCGTCCGTTTGGCGCACGGAAAGACAGCTTCAGGACCATGTTGGCTGCACTTGGGCAGGGTCATAACCAGATTATTAAGGAGTCCCATCACTGATGCTTTTgcagaaaatgtaaaagttatagtttttttttttgtaatttagtGTTACAATTTCAGACTGCACGCCAGTCTATGTATTCAGCTTGTTCAGCCTGTATGTCTATTGTCCGATACCTTTCCAAGATACAATTTGTGTTTTGCATGAAGACTGTACTAAACGCTCCCAGACTTTGCACCACATGTGCTTACAGGACCTATTTATTAACTGTAGGAAATGTTAAAAGACTATTCAAAGGCTGGCATCAAGTCACAGTGTTTGTGGGAGTGAGAATAGCAGTGACTTTATAGAAGACtagtttaaaaacatgtttaattgtAAATGTTATTGCATAAAGTACTTTTTTGGATTTCTTTAGTCATGTTCTCATTTTTCgttgctaaaaaaataaatacagtttaataGGTTGA

Function

NR:

description
uncharacterized protein LOC110509170 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925444.2 True 1769 mRNA 0.46 6 21611776 21615292

Neighbor

gene id symbol gene type direction distance location
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding upstream 5862 21561055 ~ 21605914 (+)
tbr1a LOC108270775 coding upstream 52774 21554701 ~ 21559002 (+)
psmd14 psmd14,psde,LOC107563735 coding upstream 59509 21532681 ~ 21552267 (+)
lgsn lgsn coding upstream 221570 21383873 ~ 21390206 (+)
col9a1a LOC108438673,LOC108270765,LOC107753862,LOC107680514,LOC107597184 coding upstream 238405 21359474 ~ 21373371 (+)
nxph2b LOC108270824 coding downstream 897 21616189 ~ 21622277 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding downstream 141298 21756590 ~ 21770086 (+)
fam43a fam43a,LOC106573864 coding downstream 1517675 23132967 ~ 23135152 (+)
LOC117598438 NA coding downstream 1554591 23169883 ~ 23170911 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding downstream 1763389 23378681 ~ 23387676 (+)
G185751 NA non-coding upstream 51397 21560167 ~ 21560379 (+)
G185546 NA non-coding upstream 123249 21488324 ~ 21488527 (+)
G185533 NA non-coding upstream 144838 21466332 ~ 21466938 (+)
G185519 NA non-coding upstream 165296 21444384 ~ 21446480 (+)
G185503 NA non-coding upstream 201984 21407479 ~ 21409792 (+)
G185940 NA non-coding downstream 405556 22020848 ~ 22021059 (+)
G185997 NA non-coding downstream 766106 22381398 ~ 22381611 (+)
G186046 NA non-coding downstream 813566 22428858 ~ 22429104 (+)
G186060 NA non-coding downstream 940157 22555449 ~ 22899731 (+)
G186058 NA non-coding downstream 1274992 22890284 ~ 22942348 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 346721 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 401237 21189248 ~ 21210539 (+)
G184979 NA other upstream 1460882 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1740313 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1766538 19836145 ~ 19845238 (+)
trnap-agg_1 NA other downstream 343596 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 697150 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2592584 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 2948108 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 3916453 25531745 ~ 25696872 (+)

Expression


Co-expression Network