rab3b (LOC108270584,LOC108429523,LOC103027359,LOC107653655,LOC107592692,LOC107669838)


Basic Information

Item Value
gene id rab3b
gene name LOC108270584,LOC108429523,LOC103027359,LOC107653655,LOC107592692,LOC107669838
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15088240 ~ 15096387 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927363.2
TATACGTCATTAACATCATCAACTTCTCCACTCTGAAAAAGTACCTTTAATATGTCTTTCACCTGGAGGTGTGAATGTAGtgtacttttaaaatgtttaaggtAATTAATTAGCTTATAGAGTATAGCTTTAGAGATACATggacctttctaggtaaaagagacatactaaaggtacaaaagatgtaggCTTGATGGTACAACCACAGTGACAAGGACTGGTACAGTTTACTTCGCTGTATCTGGGAGTGTATAGTACTAAGTAGGCTAGTATGGCGAAACAGTAGCCTCTACCCTGTGGTTGTGTATCATTGTGACTTGGGAAAAGTACACCTTGGCTCAAAATTTCGGATGAAAGGAAAACTTTCGATTCGTTCGTACTTGCGAATCGATTCACTCGACCcattcaaaatatttcagacgGAAACGATTCGTCCAAAACGGTTCGTCTCCGATCAGTGCAGTCCGCCCCCACCTAGAAGGAAGGACGGAGGGAAGCAGCGCTCACACACTCGAGATGGCGAAAGCAGATCACCGCTTCGGACAAAGAGATGGCTCTGACCAGAACTTTGACTACATGTTCAAGCTTCTCATTATAGGCAACAGCAGCGTAGGCAAAACCAGCTTCCTATTCCGATATGCAGACGACTCCTTCAGCAACTCATTTGTCAGCACCGTTGGCATTGACTTCAAAGTAAAAACAGTTTACCGCAATGACAAGAGGGTCAAACTCCAAATCTGGGATACAGCAGGTCAGGAGCGTTACAGGACCATCACCACAGCTTACTACAGAGGAGCAATGGGCTTCATTCTCATGTATGACATCACTAATGAGGAGTCGTTTAATGCAGTACAGGATTGGGCAACCCAGATTAAGACCTACTCATGGGACAATGCTCAGGTTATTTTAGTGGGAAATAAATGTGACATGGCTGATGAGAGAGTGATACCTGTGGAGAAAGGCAAGCACTTGGCTGATCAACTAGGCTTTGAGTACTATGAGGCGAGTGCCAAGGAAAACATCAACGTCAGGCAGGTGTTCGAGCGCCTGGTGGACATCATCTGTGTGAAAATGTCTGAGCGAGTGGACACAGACCCGTCCATGGTCAGTGGAGCTAAGACCACTCGGCTTAGTGACAAGCCGACGCAGCTACCTCAGAATTGCTGCTGATTTAGCCTGTTTACTCTGCTGTCACGTGCTAGACTATTGTGCTGATCCTGTCTTTTCATCTGCTTTCCATTTCCATCaaaatagcctttttttttattccttacatagtagTGTTACATATATAGTTTACTGTTAACGCTATACTGTCACTTTAAACACACCTCTAACTAAGGGTCAGAGTGAGGTcaaagcagggactccagcaaagCACAAAAAAGCACATGCTCACTGCCAGACACAGATAACTCACATGAGTAAATCAGACCTCAACAGGTGTATTATTCTAGCATAATCGGTGCTTTAAAGATCACCTAACACAATCTCTCTGCTTCTTTTCTTCAATAATTGCTCAGTGAAAGAGCACAAGTGTGACCTAAACTCAAGACAACTGCAGAGTGGCCATAACAGTTATATATTATGCACAATAATGGTCTGTTGTTTCAGGGTGGTTTTGATGCTCTGTTTTTTAACTTGGCAGAACCACTGGCTGGTGGGTTCTTATAAAGTTATTTCACTGCCAGAAGTCAAGAGCACAATAGTTTTGATAGGTCATCAAGCTTCCTTTCACTCTTGCTCATATTTAATTTGCTGTCATAACAATATAGATGTCCAGGCTCAAATCTGTCCTGCTTGGCTGAGTGTGGCAACAAAAAAGCACTCACCCTACCGTTGGGAGTTTGCGAGTCCAGATCTACATataatgccacagccatccatgatTGGGAGTCTAACAGACCATAAATAACCATCTCATTATCAtttgtgggcatctgtgagctcatgtatggaAAAAAGAGCAGACaccactttcctctgagtgtgttcaacTGCCATGTGACAGTACATGAGCAGCAGCTCAAAAAAGATGTAATGGGTACACATGtatcagaggaagcatgtgcaaCTCTTCACCCtcattgtgtaaatatttttaaaaaatgggggAAACAATCACATCCTGCTCACTCTCAAACATTTTACTCTCACATGGTCAGATTTCCTTTCTGTTGTACATCATTTTTTAGTGCCTGTCAATGTTTAATGGTTCTTGATATTGATAACTGACCACTCCAACTGCCCGGCGTCAGCAATATGGTGTCAGAATGGGAGGAGCTTATCTTGATTTCCTCCTACTATTAAAAATGTAGAGAAGGCCATCAGCTGAAAcccaatctgattggctgacgaATTTCGGCAGTGTTGTTGCACCAAAGTATGAAAAAAGGAAACCTAAAACGGGTGAGCACAAAAAGTATAAGTGAGCCAGATGAATTTAACTTGTAACTTGTACATGTACACATGTATTATTGTATGAGAGTTGAAGTAACCTGCGTAATCATTGCATATCCTACTAACTGCTACAGAAGCTAATGCGCTCTCCATTTTTGGCAATAAAATAACGCCATAGGTTCCTTTGAATACCTATAATGGGCAcaatataatgtgtgtttttggacATATGGAGCACTTTGCAACTGTTcaatgtatcatgatatatcaAAGGTAGTTTAGTACTTGCATGAAGCCAAGTAGCCTACAAATAGtcttacaaaacaaaaatcaaatcCCTACATGTTCTCTTGCATAAAAGTGAGTATTTTCTtgtggaatatatatatatatatatatataactatatatatgaatgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtacTGACTGTATTCAGCCGTAAAGTGACATTCAGGTTGTTACTGCACATATTTACGCTTCATTTACAGTGacaacacattaaaaatatctttagaGATGCCAGTATATGTATATTGTAAAACTTGTGCCACGACTGATTTATATTTCAGAAACGTAGCAGATCCTTGTGGAGTTCTACATGTATCACATACATTGAGTTTTCAATCAAGTGATGTTAGCATTTATGAACAATGTTTTATGTAACTACTtcgaaatttattttacatgaaatatttataattaagaTGTTGTAAGCTATCAAGCTGGTCTTTGCTGagtagatatttatttttatgctatAACCGAAGCTGGGAACATATAGATGTACTGTAACTTTGCTGTCAGTGATTTTTGACTGGTAGAAAGATTTGCACAAGGATATAGAGTGATTGTACAGATCATTGTAAAAGTTGGTTTTAGATGCAATTTGTAACAATAAAAGTACCACTCACACCATA

Function

NR:

description
PREDICTED: ras-related protein Rab-3B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06108 RAB3B; Ras-related protein Rab-3B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927363.2 True 3365 mRNA 0.40 5 15088240 15096387

Neighbor

gene id symbol gene type direction distance location
atpaf1 atpaf1 coding upstream 2858 15080920 ~ 15085382 (+)
frem1b LOC108271303,LOC108429520,LOC107669836,LOC105904425,LOC107728586,LOC107599441 coding upstream 8473 15050182 ~ 15079767 (+)
tm2d1 tm2d1,LOC107653653,LOC107715116,LOC107669801 coding upstream 239140 14838497 ~ 14849100 (+)
tal1 tal1 coding upstream 384152 14696583 ~ 14704088 (+)
ier5 LOC100304758 coding upstream 415510 14670881 ~ 14672730 (+)
nrd1b LOC108271269,LOC108429524,LOC100693897,LOC102784242 coding downstream 2928 15099315 ~ 15114363 (+)
axdnd1 axdnd1 coding downstream 18663 15115050 ~ 15126124 (+)
tdrd5 tdrd5 coding downstream 35620 15132007 ~ 15148372 (+)
fam163a fam163a coding downstream 54634 15151021 ~ 15165898 (+)
rabgap1l rabgap1l,LOC106613570,LOC107715121,LOC105011404,LOC107728556,LOC106574055,LOC107592725,LOC107655181 coding downstream 74174 15170561 ~ 15285798 (+)
G181632 NA non-coding upstream 1920 15085901 ~ 15086320 (+)
LOC113533733 NA non-coding upstream 86007 14994688 ~ 15002233 (+)
G181599 NA non-coding upstream 110689 14960885 ~ 14977551 (+)
G181588 NA non-coding upstream 157378 14867927 ~ 14930862 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding upstream 423176 14664701 ~ 14665064 (+)
G181851 NA non-coding downstream 196851 15293238 ~ 15294067 (+)
G181824 hnrnpm non-coding downstream 202861 15299248 ~ 15308946 (+)
G181944 NA non-coding downstream 276371 15372758 ~ 15372970 (+)
G181945 NA non-coding downstream 276833 15373220 ~ 15383177 (+)
G181946 NA non-coding downstream 279689 15376076 ~ 15377227 (+)
pdzk1ip1 NA other upstream 376513 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 438555 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 488261 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 525230 14561555 ~ 14563010 (+)
LOC113531387 ctxn1 other upstream 847699 14222218 ~ 14240541 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 572411 15668798 ~ 15673982 (+)
LOC113532318 NA other downstream 1158660 16255047 ~ 16256782 (+)
G182819 NA other downstream 1486916 16583303 ~ 16584943 (+)
G182877 NA other downstream 1816871 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 2025512 17121899 ~ 17189315 (+)

Expression


Co-expression Network