hcn2b (hcn2,hcn2b,LOC108429559)


Basic Information

Item Value
gene id hcn2b
gene name hcn2,hcn2b,LOC108429559
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16087204 ~ 16122109 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927396.2
AAGAAGTAAATCCGCGCCGCCGCGTCTCCGCCTTCACACTCTGATCTCCGCCCGCCGGAAGAGCCGTTTCACCGCCATGGACGAAGCGGAGGACGGCGACGAGGACCGCGGACGCGAGCGGCGTTCGAGGCTCGACAGCGGAGGCTTAGCTGACCCTTCCAGGACCAGGTGTTCAACGCCAGGAGGGGGAGCAGCACCGAGCCAGACCTCTAACAGCAGCGCCGGCGGAGCTCACGAGCTCCGCGCGTCGCGCGACACGGACCGCGCGCCTGTCTCTCTGTGCCAGGGCGACGCGTGCGGCTTCGGCTTCGGCTTCAGTTTCACGAGCAACGACGACGACACGAGGACCTCGGCCACTAGTGTTGATGTGGAGCAAGAAGACGGAGgcgaggaagaagaggaggaggaggaggaggaggaggaggacgtcGGCATGAGACGCGCCGTGAACGGAGACTGCAGGAGAGACACGAGCTCACCTTCACTCCTCTCCAAACAGGAGAAGCAGACAGGTGGCTCGGTCACACCTGAGGAGAGAAGAGCGGGTAGCGCATGTCCTTCCACCACCATGGACGGCTCGATTACGCCCGCAGGCACCGGAGCCGTCGAGCCGGAGAAGAAAGACCCTCGGGTGGCGTTTTCGAGCTCGAATCCCGCGCAGCCCGCCGCGCTCTCCAAGGCCGAGGACGGACAGATGACAGCGGAGGACGGAGAGGCCAGAGACAGTCAGACCTACATGCAACGCCAGTTCAGCTCCATGCTGCAGCCCGGAGTCAACAAATTCTCCCTGCGCATGTTCGGCAGCCAGAAGGCGGTGGAGAAAGAGCAGGAGCGGGTCAAATCTGCCGGGAACTGGATCATCCACCCCTACAGTGACTTCAGGTTCTACTGGGACTTCACTATGCTGATGTTTATGGTGGGCAACCTAATCATCATTCCAGTCGGCATAACCTTCTTCAAAGACGAGACCACCACCCCCTGGATTATCTTCAACGTGGTCTCAGATACTTTCTTCCTCATGGACCTGGTGCTCAACTTCCGCACGGGCATTGTCTTTGAGGACAACACAGAGATCATTCTGGACCCTAAAAAGATCAAGCAAAAGTACTTGCGGACTTGGTTTGTAGTGGACTTCATCTCATCTATCCCTGTGGATTATATTTTTCTCATTGTGGAGAAAGGCATCGACTCGGAGGTTTACAAGACAGCGAGGGCGCTGCGGATCGTGCGCTTCACCAAAATCCTTAGTCTGTTGCGGCTTCTGAGACTTTCCAGACTCATCCGCTACATCCACCAGTGGGAGGAGATCTTTCACATGACCTATGACCTGGCGAGTGCTGTCATGAGGATCTTTAACCTGATCGGGatgatgctgctgctgtgtCACTGGGATGGCTGCCTGCAGTTTCTGGTGCCCATGCTGCAGGACTTTCCCTCTGACTGCTGGGTTTCCCTCAACAAGATGGTGAACGACTCATGGAGCGAGCTGTACTCCTTCGCCCTGTTCAAGGCCATGAGCCATATGCTGTGTATTGGCTACGGACGCCAGGCCCCGGAGAGCATGTCTGATATCTGGCTCACCATGCTGAGCATGATCGTGGGAGCCACCTGTTACGCCATGTTCATCGGCCATGCCACTGCGCTCATCCAGTCGCTGGACTCGTCACGCCGCCAGTACCAGGAAAAGtACAAACAAGTGGAGCAGTACATGTCCTTCCACAAGCTTCCCGCTGACTTCCGGCAGAAGATCCATGATTACTATGAACACAGATACCAAGGCAAGATGTTCGACGAGGAGAGTATTTTAGAGGAGCTAAATGAGCCACTGAGAGAGGAAATTGTCAACTTCAACTGCCGTAAGCTGGTGGCCTCCATGCCGCTTTTCGCAAACGCTGATCCCAACTTTGTGACGGCTATGCTGACCAAACTCCGATTTGAAGTCTTCCAGCCAGGAGATTACATCATTCGTGAGGGGACCATCGGCAAAAAGATGTATTTCATCCAGCATGGGTTTGTGAGCGTCCTTACCAAAGGCAGCATAGGCATGAAGCTCTCTGATGGCTCTTACTTTGGAGAGATTTGCCTGCTGACTCGGGGGAGACGCACGGCCAGCGTTCGAGCCGATACCTATTGCCGTCTGTACTCGCTCTCCGTGGACAACTTTAATGAAGTGCTGGAGGAATATCCAATGATGAGGAGAGCCTTCGAGACCGTGGCCATTGACAGACTAGATCGAATAGGCAAAAAGAACTCCATCCTGATGCACAAAGTCCAACATGACCTAAATTCTGGAGTTTTCAACAACCGCGAGAATGAGCTAATTCAGGAAATTGTGAAGTATGACCGGGAGATGGTGAAACTAGTTGACCTGCAAAGACCCAGGGCCATGTCGGCCACTCAATCCACTCATGGAACCATGTTTCCTTCCTCCAATCAGCCTCCAACAGGCTCCGCCATTGCCACACTGCAGCAGGCTGTAGCCATGAGTTTCTGTCCCCAGATGGCCAACCCTCTGGCAGCCCACGGAGCCCTCCAGTCCCCCCGCATGGTGCGCCGTTTCCAGGTAGTCCAAAGCCTCTCCAGCCCTGGGACCCAGCAGACTCCTTCAGGCTCACAGTTATCCAGCACTGCTCTGCCCTCTGCCCTCACCAGCACGCCTGTCCAGAGCCCGTTGGCTACCGGTGGTCGAACGTTCCAGTACAGCTCCAGTCCCATGGGTGCTCCTTCAGGCTCCCAGCTCTCCCTGGTGCAGCAGCACATCTCCAGCCCCACACACCGAGCAGCAGTTCCCAGGAGTGCAATGACCCAGGATGCCAGGGCCCTCTCAGCCTCCCAACCATCTTTGCCCCATGATGCCATGCAACCAGCTGCCCCAAGCCCACCCCAGTCCACAAGAGTTTCCTCCACCTCCATTGGACCACCTCACAACCTCCCAGGGCCCACGGGCTTCAGGGCTGCCATTCCTCCTAGGATGACACTTCAACACCAGATGTCTGTGGGAGCTTTCCCACCTGCCTCCCTACCACAAATGAGGCCAAGCCAGGACTCGGGACTGCCCAAGAAAGATTCGGTAGTCAGCCTTCCAGACACGGACCATCACGTTAGATCTAGATTATCTTCCAATTTGTGACCTTGATGGAGCTGGGTGTGTAGGTATCTCTTCCTTCAGCAAGTACATTTCTCAACTCCTTGTCATGCCCTGGATCTTACTTTAAGAATGTACATGGTTCAAACTGTGACAAGGGGGGTGACTAGAACTGCCATACTTGACAACATACTATTAACCATACAAAGTCTGTAAAACTGAAGATTTAAATATCACAGAGATGTTTCTGTTGTACCCACCAACATAAATATCAATGTAGCTTCTTCCACACAGTTTGCCTCTTCATAATTGCTTACTTCTATTGTGGTTGTATTCAAACATTGCAAGAATCAGTTCCCTACTGTACATGGTAGTTTAAATAATACAGTGAAGAGTGGAATGCAACATGGGGAAAGGTGACATGTCTCTGATTACTATGTAACTCTTTAGAAAAGTGTTTTTGCAAGTCTCCTCCACCCTACTTGGAGTGGTTAGTTAATAGCGTTTTTACTTATGATCGAGCAATATTTAAACTGCTATAGAAAATGCAAGAAAGGTTTATTTGACAAGGGTGTATTTGACAGTTGATCAATTTGGAAGCATTGGTACAGAAATGGATTTGATTTCTTCCCTCTGGACCAAAGtatggcagaaaaaaatgtctgtttaaacaactgaaatgaaaagagGGGAACATAATTTCATTGCCTTGATTTCCACCTAGAAGCCATATTTTTGtccaggcctgtgtgtgtgtgtctgtgtgtgttttaaatatacaaacagttatttgttcatatttacagCCCATGGCAAATTTCTACattaaagtattattattaactataaaaaagaaagaaaaccaaaaaataactttttttggTTGATTTAATTACAGTGGAAAGAAGAAATGTAGGTGGAGAGAGACACTGCAGACTGAAAACCAAcaatactgtaaatacattttttcccatATTGGTGGCTTTTGTAGTGCTGCATTCAAATGAGTTTCCAAATTTAACCTCACATGTGGATATCAGTGGGAATTAGTCAGCTATTCAGAAAAGATTAAACTGAGTTAGATATTTCCCACACTAATGTATAAAGGATGTAGCAGCATACAGCGTGTGCAGTCACTCTGTATTAACTCAACACACAAAAGTCATATGGGCTACTATTTGTGAAATGCTCCTTAGCATTGCACAAGCAGAGGCAAGGTTATGTGAACCGAATGTGAGATATCTGCTGCTAGTGATTTAGTGGTTATATCCAGTAAAACATGTTAGCACGCATTATGCAACAACGAGTCTTTCTGTGCTCATGTGCTACCCATCTTTCTGCTTCACGGAATAATCGACTCTGCGTAACTCCATGATAAGTTGACTTCCACTCTGTCACTGTTATTGATTTGAATGTGTTTCTTTTCATCACTGCACTGTTTGAAGATGGCTGGCTGTAATCTCCCCTGTGGCTCTCCCCTTCCCCTTGCTTTAGTAATGTCGCTGGTGAAGGCCTGTTACATGTAATACTCACAATGTGTCGTGTGGAGGCTTCCTGTTTGAGGGCAATATAAGCCAGCGTTTTCTTGTTCATGAATTTTGAGGGCGGCTAATGTCTGGATACATGGATAAAAATTGTTTCAAATCccttatataatttttttacagcttGAATTTTAATATTCTGGCCCTGTAAGATAAATCTGTTAAAAACATCCCCATTTGCCCCTTGTGTATGAAGGTTAAAGTGTAAAACCGTTAAACCTGCTGGCTGGTATTCTACCACCTAAAAATTCTTACAACCCAATAACACTGCAAGagaacattttttctttcttcagataTTCGACAATCTCCCTACTCTTGTATACTGTTTGCCAAATTCAAAAAAtctttaaagcaataaaaatctTTCCATGTTTTGACCAAAAGAAGCAAGGAAGGTTGACTGAATTGCTGTTCACcattgtaaagaaaacatgccacAGGTTTTGCTATGCATTCAGGCTGGGGATGACTTCTGTTCTGTGGTTCAAGCTCATCTTTCAATAAACAGAGGAAGAGTTTGGTTTGa

Function

symbol description
hcn2b Predicted to enable sodium channel activity and voltage-gated potassium channel activity. Predicted to act upstream of or within potassium ion transport; sodium ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human HCN2 (hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2).
hcn2 Enables cation channel activity and identical protein binding activity. Involved in inorganic cation import across plasma membrane; regulation of membrane potential; and response to purine-containing compound. Located in plasma membrane. Is integral component of plasma membrane. Part of HCN channel complex.

NR:

description
PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0051049 regulation of transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K04955 HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927396.2 True 5158 mRNA 0.49 8 16087204 16122109

Neighbor

gene id symbol gene type direction distance location
bsg NA coding upstream 2071 16074562 ~ 16085133 (+)
fstl3 fstl3,LOC107728592,LOC107687713,LOC107655223,LOC107569933 coding upstream 24094 16056916 ~ 16063110 (+)
cbarpb cbarp coding upstream 56353 16012468 ~ 16030851 (+)
cilp2 cilp2,LOC107728576,LOC107719612,LOC107599460,LOC107655229,LOC107687716 coding upstream 231485 15840997 ~ 15855719 (+)
yjefn3 yjefn3,LOC108271278,LOC108429551,LOC103041169,LOC107687717 coding upstream 248224 15805286 ~ 15838980 (+)
fgf22 fgf22,LOC106613753,LOC107569930,LOC107655219,LOC107719646,LOC107687712 coding downstream 57433 16179542 ~ 16207820 (+)
LOC113538485 LOC100304649 coding downstream 89237 16211346 ~ 16233837 (+)
LOC113538695 NA coding downstream 125618 16247727 ~ 16249191 (+)
LOC113533225 NA coding downstream 150859 16272968 ~ 16275203 (+)
hsd11b1la hsd11b1l coding downstream 157870 16279979 ~ 16285280 (+)
G182190 NA non-coding upstream 77969 16006054 ~ 16009235 (+)
G182116 NA non-coding upstream 96794 15988630 ~ 15990410 (+)
G182115 NA non-coding upstream 99223 15938100 ~ 15987981 (+)
G182167 NA non-coding upstream 193677 15893292 ~ 15893527 (+)
G182152 cirbp,LOC108271114 non-coding upstream 201379 15873010 ~ 15885825 (+)
G182483 NA non-coding downstream 137949 16260058 ~ 16260316 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding downstream 586516 16708625 ~ 16725527 (+)
LOC117598387 NA non-coding downstream 730299 16852408 ~ 16857137 (+)
G182906 NA non-coding downstream 838550 16960659 ~ 16961299 (+)
G182910 NA non-coding downstream 867210 16989319 ~ 16989519 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 413222 15668798 ~ 15673982 (+)
pdzk1ip1 NA other upstream 1375477 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 1437519 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 1487225 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 1524194 14561555 ~ 14563010 (+)
LOC113532318 NA other downstream 132938 16255047 ~ 16256782 (+)
G182819 NA other downstream 461194 16583303 ~ 16584943 (+)
G182877 NA other downstream 791149 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 999790 17121899 ~ 17189315 (+)
LOC113528769 klc4 other downstream 1074171 17196280 ~ 17222532 (+)

Expression


Co-expression Network