hcn5 (LOC108270784,LOC103027332,LOC107658208,LOC107712254,LOC107724451,LOC107668864,LOC107569239,LOC107597416)


Basic Information

Item Value
gene id hcn5
gene name LOC108270784,LOC103027332,LOC107658208,LOC107712254,LOC107724451,LOC107668864,LOC107569239,LOC107597416
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21029394 ~ 21036574 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927583.2
TCGAGACTGGCAGTGATGAAGGGAAGGAGAGAATGGAAAGTCTTGTGCTTGCGATCCTCTTCGCTACCCTGCTTGGACAAACAAGAGTGCTGaagaattattgtgtgtgtgagcaagtaATAGGGAAGAAAGGCAAGATCAGCATAAAAGAAGTCCAGAAATAAAATTGCCAGAGGGGAGCAGTGATGTCAAAAGTGGTTTCGTGATCAGCGTGCTTAGTCAGGGACCAGAGATGGAAAAGCAAGCACCTGGGACCCACGGATGCTTTAGCTGGGACGCATGGAGAAATCTGCTGCTGCCCCAGTTAAACAGGCAGTCTCTGTATGTGTACGGCAGCGAAGTGGCTGTGGAGAAGGAGTGTAtcaaacaaagagagaaaggagtCTTTGTCATTCATCCCTTCAGTCCTTTAAGGAGTTACTACATAATGTGCATGGTGGCCATAACCTTTCTGAACCTCATTGGGATCCCGATAGAGATTGCTTTTTTAGATGGTCAAGGCGGAGTGGGCTGGGAGGGATTTAATGTCTTCTCAGATACTCTGTTCCTTGTAGACGTCGGACTCAACTTTCGTATGGGGATCATTTCCGAGGACAACGAGGCGGCCATTCTCGATCTGAAATCCATTcgacaaaattatttaaagagtTGGTTTATACCAGACATGATCGCGGCATTTCCAGTGGGTTACATCCTTCTAATTGCGGATCTGCAATATCATGGTGATTCTCCATCTTCTAAAGCCAGTAAAATGGTGCGGATCCTTATGTTCGTGCGGATCCTCAGCCTGGTGCGTCTGCTGCGTGTCTCTCGCCTGGTTCGCTTCTTTAATGAAGTGGAGAAAGTGTCGAATGCCAACCTGGAAGTAGTTCGAGTTTTGTTCAGAATCCTGTCCCTGTTCATGATGATTTTTCTGCTGTGCCACTGGAACGGTTGTGTGCAGTATTTTGTTCCAATGCTGGAAGAGTTTCCATCAGACTGCTGGGTTCGACGAGAAAATCTCATGAACGCTACAGTGGGAGAGAAATATTCCTTTGGTGTCTTTCGTGCACTCTCACATATGACGGCAATATCATACGGTTCCTCTGACACACCTACAAATGAGGTAGAGCTGTGGATTGTCATGACCAGCATTGTATCAGGAGCTCTAATGTACACAGTGCTGGTTGCCAACACAGTCGCTCTGATGACTGACACAGACCTCACTGCAAAAGCATACAAGAACAAGTTGAATCATCTGGAAGACTATATGACCTCCATGAAGCTTCCCAAAGAGCTGCGTATTCGCATCAGTAATTACTTTCAGGCTCGCTTTGGGGGAAAGTGGTATGATGAAAAGGATGTACTAAACTGGGTGTCTTCATCCATTAAGGAGGAGATTTTGATGATCATGTGCTCGGGCCTTGTGAGAAGAGTCCCCTATCTTTCGCAATTGTGAAACAAACTTCATCAATGCCATCCTTTTCCATCTGCAATATGAGGTTTTTCAAGAGGGTGACGTCATTGTATATCAGAACAGCCCTGGTGATCGCATGTTCTTCATCGAGCGTGGACAGGTCATGGTGGAGACAGAGAATTCTCAGATAGAGCTATGTGATGGGGGCTACTTTGGAGAGACATGTCTCATGACCAGAGGAAAACATCTGGCTACAGTTCGAGCTCAGACCATATGTCAAGTCTTTTCTCTGTCTGCAGACAGTTTTTACAAAGTGCTCGAAGACTACCCAGAGGCTTTGAAGAACATGAAGATAACAACCAAAGAGGCCATAAATTTTATTTGCTATCCTTGATTGTGATCTGAATGGAAAATCATATTTAGCACACTGGAGAGTGCCTATAAAAATTGCTCACCTTTTGTCTGTAAGAAAGAAAGGTTTTGTAGTCCTTACTTTATGGTAATGAACAGCACTCTTTTAGTTGTTTACgtttattgattttaaaagtg
>XM_026927592.2
CTCAGACATGTGCTACCTCcattgtttgtttgcttttctccTGATTCTCCTGACCAGGGAATAAGTGGTGGTTGATAGCCGAAGGACACACTGGAAAGAGGAGTTACTACATAATGTGCATGGTGGCCATAACCTTTCTGAACCTCATTGGGATCCCGATAGAGATTGCTTTTTTAGATGGTCAAGGCGGAGTGGGCTGGGAGGGATTTAATGTCTTCTCAGATACTCTGTTCCTTGTAGACGTCGGACTCAACTTTCGTATGGGGATCATTTCCGAGGACAACGAGGCGGCCATTCTCGATCTGAAATCCATTcgacaaaattatttaaagagtTGGTTTATACCAGACATGATCGCGGCATTTCCAGTGGGTTACATCCTTCTAATTGCGGATCTGCAATATCATGGTGATTCTCCATCTTCTAAAGCCAGTAAAATGGTGCGGATCCTTATGTTCGTGCGGATCCTCAGCCTGGTGCGTCTGCTGCGTGTCTCTCGCCTGGTTCGCTTCTTTAATGAAGTGGAGAAAGTGTCGAATGCCAACCTGGAAGTAGTTCGAGTTTTGTTCAGAATCCTGTCCCTGTTCATGATGATTTTTCTGCTGTGCCACTGGAACGGTTGTGTGCAGTATTTTGTTCCAATGCTGGAAGAGTTTCCATCAGACTGCTGGGTTCGACGAGAAAATCTCATGAACGCTACAGTGGGAGAGAAATATTCCTTTGGTGTCTTTCGTGCACTCTCACATATGACGGCAATATCATACGGTTCCTCTGACACACCTACAAATGAGGTAGAGCTGTGGATTGTCATGACCAGCATTGTATCAGGAGCTCTAATGTACACAGTGCTGGTTGCCAACACAGTCGCTCTGATGACTGACACAGACCTCACTGCAAAAGCATACAAGAACAAGTTGAATCATCTGGAAGACTATATGACCTCCATGAAGCTTCCCAAAGAGCTGCGTATTCGCATCAGTAATTACTTTCAGGCTCGCTTTGGGGGAAAGTGGTATGATGAAAAGGATGTACTAAACTGGGTGTCTTCATCCATTAAGGAGGAGATTTTGATGATCATGTGCTCGGGCCTTGTGAGAAGAGTCCCCTATCTTTCGCAATTGTGAAACAAACTTCATCAATGCCATCCTTTTCCATCTGCAATATGAGGTTTTTCAAGAGGGTGACGTCATTGTATATCAGAACAGCCCTGGTGATCGCATGTTCTTCATCGAGCGTGGACAGGTCATGGTGGAGACAGAGAATTCTCAGATAGAGCTATGTGATGGGGGCTACTTTGGAGAGACATGTCTCATGACCAGAGGAAAACATCTGGCTACAGTTCGAGCTCAGACCATATGTCAAGTCTTTTCTCTGTCTGCAGACAGTTTTTACAAAGTGCTCGAAGACTACCCAGAGGCTTTGAAGAACATGAAGATAACAACCAAAGAGGCCATAAATTTTATTTGCTATCCTTGATTGTGATCTGAATGGAAAATCATATTTAGCACACTGGAGAGTGCCTATAAAAATTGCTCACCTTTTGTCTGTAAGAAAGAAAGGTTTTGTAGTCCTTACTTTATGGTAATGAACAGCACTCTTTTAGTTGTTTACgtttattgattttaaaagtg

Function

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927583.2 True 1945 mRNA 0.44 10 21030258 21036574
XM_026927592.2 False 1631 mRNA 0.44 10 21029394 21036574

Neighbor

gene id symbol gene type direction distance location
chrna4b chrna4,LOC105906770,LOC103467111,LOC106941279 coding upstream 39973 20968735 ~ 20989421 (+)
elovl1b LOC108270818,LOC108438650,LOC107656106,LOC107753833,LOC107665848,LOC107562086,LOC107723066 coding upstream 81603 20932742 ~ 20947791 (+)
LOC113530200 LOC108270822,LOC108438687 coding upstream 142050 20881535 ~ 20887344 (+)
mast3b mast3 coding upstream 189805 20806331 ~ 20839589 (+)
si:ch211-1a19.2 NA coding upstream 307588 20719431 ~ 20721806 (+)
txlng txlng,LOC107723067,LOC107665847 coding downstream 6726 21043300 ~ 21050473 (+)
zrsr2 zrsr2,LOC107729896,LOC107602790,LOC107753840 coding downstream 26843 21063417 ~ 21070097 (+)
npepps npepps,LOC106587691,LOC107718863,LOC107674532 coding downstream 50343 21086917 ~ 21105876 (+)
mrpl45 mrpl45,LOC107753856,LOC107680544 coding downstream 72019 21108593 ~ 21114493 (+)
socs7 socs7 coding downstream 94905 21131479 ~ 21141847 (+)
G185418 NA non-coding upstream 4834 21002828 ~ 21024560 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding upstream 61493 20964535 ~ 20967901 (+)
G185330 LOC101478692 non-coding upstream 132933 20890247 ~ 20896461 (+)
G185206 NA non-coding upstream 321367 20705994 ~ 20708027 (+)
G185182 NA non-coding upstream 461102 20568076 ~ 20568292 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding downstream 22490 21059064 ~ 21060228 (+)
G185439 NA non-coding downstream 40601 21077175 ~ 21339714 (+)
LOC113528706 NA non-coding downstream 200730 21237304 ~ 21248130 (+)
G185500 NA non-coding downstream 353777 21390351 ~ 21390568 (+)
G185501 LOC108270736,LOC105903432 non-coding downstream 354270 21390844 ~ 21391810 (+)
G184979 NA other upstream 878500 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1157931 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1184156 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 1194980 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 1329120 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 152674 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 215571 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 922314 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1275868 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3171302 24207876 ~ 24210763 (+)

Expression


Co-expression Network