ticam1


Basic Information

Item Value
gene id ticam1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14183219 ~ 14187331 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927615.2
AtcacaccctatgtagtgcacttctCCAAGCTGTTTGTAATGGCGCCGTTGTTCTTTGACACAATGACGTCAACGTTCTCCCAGACaatttcctcttcctgtttctcCACAGAAGCAACCAAAAGCAAACAGCGTTATTGATTTAGAGagATATGGACATGGATGAATCAGTGTCATCACCCTGCAGGATCAATACCCCATTAGAGCAGCAGGAATGAACATGTGGGCTGGGCATGATGGTTTGGCCAACATTCATATTGCACTAAGAACAAAATGGCAGAAGAGACAGGACTGGTGGATGAGAAGAAGCTGACAGAGCCTTGTGTGAAACCCAACACTGTGGTGAATAGCCCCTCAGAAAGTTCAGTCTCAGGATCAAGAGGCACTGAGAATATCTCTGGAGAACACACAGCTGCTGGATGTCAGATTATGGGTGCCTCCTTCCAGCCAAGCAGGGGAACCGCTGAGGTATTAAAAGCTCAGAAAGAGCCACCTAAACGAGATGATAGCTACCCATCCTCTCTTCACTCCACCTCCACTTCCTGCAGCTCCTACAGCCTAGAAATCAGCGTATCCACGACCAATAACAGTAACAAAGAGTCAAGACCGCTGCCTCTAAAGACACCTCCAGAGAGCAGAGATGGTCAAAACCATGAGGCCAaggccccaagtcccctgggctATAAGAATCCAGTTCCATCAGTAACAAAATCATATAGACCTTCAGATCCCAAGCCACTCAAAGAAAAGGAGCAGTTAGCAGAATTAAAGTTCATTCAGTGCCTAGATAAGCATGGCACTTCTGAGATTGTAACACCCAAGTGCCCAAGTATAGACTCTGGACTGGAGAGGACATTTTTGTCCAGCCCTAGTGGTGATGGAAAGGTAGGAGCTCAACCAGTGTCAACAAGCCAGCCATCAAAAGCAACTTCCACTCAGGAAGTTGGAAAGCATGAGAGCTATGGTTCAGAGAAGCGAGACAGCCAGGAGGAAGAGGGCATGTTTTATGCATTTGTAATCCTGCATGCAGAGGAGGACTCCGAAGAAGCTATGAGACTCAAGTCCAGGTTGGAGTCGATCTCCTCAACAACTGGAGCGACTTTCTCTGAGGACTTTGCAGTGCCCGGGCAGTCCACCTTCAGGTGTGTGGAGGACGCCATCGAGAACTCAGCCTTCGTCATGCTGCTGCTCACAGCAAACTTTAACACTCACCTAAATGAGACAAACGCAGATTCTGCACTCATGAACTCAATTGAAAAACCACACAAATACAACACCGTCATCCCTCTGCTGCCCCGGGCCAATGGTTTGACTCGTGATCAAATGCCCTACGCTTTGAGAACTAAAAACCCACTAGATGAAATGAGGGACAGAGACATTTTTGAAAAGATGGCCAAAAAGGTCTTGGACTTGAAAAAGATCCAGATCCAGAAGACAATGTGGAGAAAGGCACAACTGGTAAAGAAAGAACGGGAAAAACAGCAGCGGTTGCAGGAGGAGAGACAGTACTGTAAGGACTTGATTCGAGAGTCTGCAAGGGTCCGAGAGTTAGAGGAGCAAGTACAGCAACTGCAAATGCAACAGCAACGCCTACCTCCTTATGCTCACCAGCCCAATTCATACCAGGGTTTTCCTGGAAGACCACAGTCGTTTAGTTCCATGCCTTTCCGAGGCCCAGTTCCGATGCCTTCATATTACAATGGGAATACGTGGCAACAACCACCTTCCAACATCCACATTCAGAATGCTAAGTGCATCATGATCGGGAATAACTCCACCATGACTGTGGGAGGAGTTGTAGACTCTGGGGATGAAGATAACTTCTGAAAACTGAAACACTGCCTTGAATCACAAAAATATGTTCACATCACTATGAATAATTCACATCACTATGAGATTGGACCTTTAGCTTATCCAATGATTAGGGTTCATATAGTGTCAGATTCATCATTACTCCTAGTGTATGAATGGACGGTTATTTCACTGTTGACTTTTTCACAATACAGATTAAAATTGTCCATTACCATCTACCAATTCATTTTTCAAGTTCCTTACTGCAGTGGTTCTCATCTTTGTGTTTGGCTGCAACTCCCTTCTTCTGGACTTGCCCTTAATCATACTACAGCAGTCTCCATTTCTCCGCTCAGGGGACATCGCTGTAATCCGCTACTTTTGTAAACGTTATGATGGTACCGCTGCTGAGACTACTCGTATGTTCATAACTTGATTATACACAACAATttatcaaacacacagaataaCATGGCAATGCAGACTAGAACTAAACCCAGCAACTATCTGGGGGTGTTTTTTGGCTAAGAAGTGCTGTACACTGCCATGGTAgttggaattttattttattttatttgtttggctcatcacaccacctttcCTCTCGgccactctctctttccactTGTAAGGATAATGTGCTAAGTACTGACAGTGTAAAagattttatatgtttaataggtttctaagaaaaaaagaacaattagGGGATATGAGCtttctgtttccttttggtttatATATATGGTGGGTGGGTGTAGtcaatttaattaattctttcatttttaccacaggcttgtgtgtttttaaatggttgatTCATTATTGTGATAATTATTGTGTACAGCTGATGGTCTGGTCAGTAAAATGATTACCCAGGACTTCAATTTTGTGTGCTCTGGCACTAAATGATATTGTTATTGTAAAAGAACTTGAAGAACTTaaagaaaattgtaaaatttctCAGAAATTGAGTGTTTTTTGAAAAATTCTCAAATGTCCATAAATGTATCACATACTAAATATACAGTTTACCTGCAAATGCAGTACTTAACAGATGCTTCTTGGACTTGTTTTTGGACAACCAGAAGCAGGAGATGTACCAGAACAAAGAAATGAGGAAGAATGAATCAGCATGAAGAACAGATTAAATAACTCCACCATGCCtgtggcaggaggaggaggagactcTGGGGTTGAAGATCGCTTCTGAGATATGACACTTGAATCATAAATGCAAATTGGTGCAATTATTCATATCAATCAGTTATTTTCTATGGAATTGTGTTTTTCCAATGAAACATCTGATGATTTTTACCTTCCATGTTATATGTGGATGATGGTGTGATTGTGGTATCCAGTATATCATCAATAAAATGATTACCTTGCAA

Function

NR:

description
TIR domain-containing adapter molecule 1-like

GO:

id name namespace
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K05842 TRIF; toll-like receptor adapter molecule 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927615.2 True 3182 mRNA 0.42 2 14183219 14187331

Neighbor

gene id symbol gene type direction distance location
gipc3 gipc3,LOC108270865,LOC108424935,LOC100702370,LOC102212133,LOC107559818,LOC107678090 coding upstream 670345 13496678 ~ 13512874 (+)
lim2.2 LOC108270866,LOC100701835,LOC102794991,LOC101061816,LOC101468118 coding upstream 714742 13462280 ~ 13468477 (+)
ftsj3 ftsj3 coding upstream 722110 13449459 ~ 13461109 (+)
rpl36 rpl36,LOC106560598 coding upstream 753076 13426670 ~ 13430143 (+)
LOC113532271 hrh4,LOC103041953,LOC107678092,LOC108424938,LOC107559824 coding upstream 785444 13379796 ~ 13397775 (+)
timm44 timm44,LOC108441293,LOC107660209,LOC107561596,LOC107704494 coding downstream 1930 14189261 ~ 14203732 (+)
cers4a cers4 coding downstream 155907 14343238 ~ 14358867 (+)
c11h19orf44 c10h19orf44 coding downstream 196126 14383457 ~ 14390553 (+)
atcaya atcay,LOC108270591,LOC108430235,LOC103374683 coding downstream 275857 14463188 ~ 14469987 (+)
mibp mibp,LOC108271439,LOC103035840,LOC108430237,LOC107734093,LOC107702642,LOC107566367,LOC107698603 coding downstream 286011 14473342 ~ 14477751 (+)
G181136 NA non-coding upstream 82232 14097660 ~ 14100987 (+)
G180945 NA non-coding upstream 542256 13629695 ~ 13640963 (+)
G180926 NA non-coding upstream 735035 13447945 ~ 13448184 (+)
G180838 NA non-coding upstream 776964 13401887 ~ 13406255 (+)
G180833 NA non-coding upstream 880922 13299280 ~ 13302297 (+)
G181233 LOC108271251 non-coding downstream 173457 14360788 ~ 14361372 (+)
G181236 calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933 non-coding downstream 188162 14375493 ~ 14379473 (+)
G181252 NA non-coding downstream 222391 14409722 ~ 14410077 (+)
G181300 NA non-coding downstream 250044 14437375 ~ 14438009 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding downstream 477370 14664701 ~ 14665064 (+)
G181175 uhrf1 other upstream 9001 14165026 ~ 14174218 (+)
G180936 NA other upstream 687234 13495590 ~ 13495985 (+)
G180834 NA other upstream 877503 13301255 ~ 13305716 (+)
trnag-gcc_17 NA other upstream 907663 13275486 ~ 13275556 (+)
trnag-gcc_16 NA other upstream 909602 13273548 ~ 13273617 (+)
LOC113531387 ctxn1 other downstream 34887 14222218 ~ 14240541 (+)
LOC113540185 NA other downstream 374224 14561555 ~ 14563010 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other downstream 402549 14589880 ~ 14599979 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other downstream 435212 14622543 ~ 14649685 (+)
pdzk1ip1 NA other downstream 521596 14708927 ~ 14711727 (+)

Expression


Co-expression Network