LOC113535100 (med26)


Basic Information

Item Value
gene id LOC113535100
gene name med26
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19490432 ~ 19495901 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928296.2
tgacagagagagagagagagagagagagagagagagagagaggacgtTTCATAGTGACAGGGTTGTACGAGGTGAAATGGGTTCTTTTGTTAAGTTGCGtaacttttcctctttttaattAGTGACGTTGGAGCAAACAGGCTTTCAGTGATGGATGATGCAGTGTTAAATCTGTCACAGCGCCTCTAACCCGCTGTAGTCTTGACCTCAGTGCACTAACCGCTGCGCCCAGTCTCACTGGAGGACCATGACAACGGCGTCGGTAACGCTAACGGTAACCGCACAGCAAATCAGAGACCGGCTGCTTCAGGCGACTGACGCTCACAGCAACATCAGCAATATGGTGGCTGTATTGGATGTGATATCCATCCTAGAGAAGTACCCCATCACAAAGGAAGCGCTTGAGGAAACCCGGCTTGGGAAGTTGATAAATGACTTGAGGAAGAAGACCAGAGATGAGGATCTGGCAAAGCGTGCAAAGAAGCTCCTGCGCAACTGGCAGAGGCTGATTGACCCACAACAACCTGAAGTACTGCCAAAGGAACTTTCAAGCACTTTAAGCTCTGTTGTTGGACCCAATCGGTCTCAGTCATTGCCTGTTTCTAGATCTCCTCAGACTGCAACAGATAATGACAAGAAGCCTGTTTTACACAGTGTTCACTCTTCAAGCACTGAAAAGTTCTACcctataaaacacacaggtaAGCAAAAAGTGGAAAAGAACTTACCAACGTTAAAGGGCACAAAAAGATCTGCACTGTCAACAGCCAGTGGAAGTACTGGTGGTCCAGAGGATCTTCAAATACACACCAACGCCATCAAACCTCACTTTAGTTCTCCTGAACTCAACAAAGAACCCACTGCTTCTACAATCTTCAGAAAATCAGTATTACAACAGCAGGGACAAAGGGACATAACTGCTGTTGAGAAAGTGAAGCACAAATCTCAGAGTCACTACACCAACCCGAGTCCTAGATCAGTAAAGCAGTTAGTACCAAGCAAGCAGCCAACATCATTTTCTGCAGCTGACTCTGAACCTCTTTCTGCACTGCCATTACACTCTTCCATCCAAGGTATGCACACTGAGAGTCACCAGTCAAAAGACCTGCCACACACGGAGAACGAATCACTCCTAAACAGCGAGAGGATGCTTGAACAAATGAATAACCTACAAAACAAGTCTAAAGGCTTAGCACGGCTTCAGCCAGGTTTACTCAGCGAGGTTACCAATATGGAAACAGAAAAAGACATCAAACCCTCAGATGGCAAGAGGCGGAAGCCTCAGTCAAGAGACTATACCATCAACCTGGAAGGACGGTCATCTGATGACACGTGTAAACCTGCTCGAGTAAAAAATCGTAAATTAACCTTTGATCCCCTCACACAACAAATTAGACCTTCAGCAGTGAATCAGAGTGAGGAGCAACACACTCCAGTGGTGGATGTTAATGAGCCAGCGAACCAGAAGCAAAGCCCTTCTGCATCTTCACCCAGCGCTTTGCACAAGATGAACTGGAAAGATATGTCGCAAAATGAAATTGTCAAATATTACCTGAACCTCCAAAACAATTTGTTAAAAACAACCGGAAGTCAAGTCCCAGGGGCGCACTTTTTTATGACTGAGTACTTGAAATGTGAGGAAGACAGTATGAGGGAGGCCAGCAAAACCTATGTCCAGGTGCCCAATGTTTCAGAGACTAATTTGCCAGGGATAGACCGAGACATCACAACAGAGGACgtccacaaaataaataataagcacTGGCCTGGGGTTAACGGCTGTTACGACAGCGAAGGCCAATGGTACGGCTGGACCGAATGCATATCTTTAGACACATACGGCGACGGAAGTAAACTGAATATTCTGCCATATGTTTGCATTGACTAAAAAcagttgtataaataaaattgtgtctCTGGATTCCGCATGGTATTTATGCGTGTTCCagatatgtgtttgtgtaataactgctttataatattttgtatctatttataactttttgttctgtttgttttggatg

Function

symbol description
med26 Enables transcription coregulator activity. Involved in regulation of transcription by RNA polymerase II. Part of mediator complex.

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K15169 MED26; mediator of RNA polymerase II transcription subunit 26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928296.2 True 2024 mRNA 0.45 3 19490432 19495901

Neighbor

gene id symbol gene type direction distance location
crtc1b crtc1,LOC107747695 coding upstream 32258 19442164 ~ 19458174 (+)
klhl26 klhl26,LOC107680559,LOC107747058,LOC107597147 coding upstream 51251 19429911 ~ 19439181 (+)
rab3ab rab3a,rab3ab,LOC107680521,LOC107665838,LOC107597148,LOC107553558 coding upstream 74257 19405686 ~ 19416175 (+)
LOC113535669 pde4c coding upstream 87213 19324733 ~ 19403219 (+)
LOC113524462 NA coding upstream 167461 19319287 ~ 19322971 (+)
slc35e1 slc35e1,LOC107750991,LOC107752163 coding downstream 2462 19498363 ~ 19505101 (+)
si:ch73-40i7.2 LOC108271407 coding downstream 13132 19509033 ~ 19524997 (+)
LOC117595669 pex11g coding downstream 31145 19527046 ~ 19531687 (+)
zgc:172302 LOC108271263 coding downstream 59811 19555712 ~ 19584739 (+)
r3hdm4 r3hdm4,LOC107750993,LOC107592851,LOC107661084 coding downstream 91427 19587328 ~ 19597392 (+)
G184503 NA non-coding upstream 27589 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 28742 19459818 ~ 19461690 (+)
G184340 NA non-coding upstream 408947 19081252 ~ 19081485 (+)
G184309 NA non-coding upstream 477820 19012407 ~ 19012612 (+)
G184167 NA non-coding upstream 595557 18891239 ~ 18894875 (+)
G184614 NA non-coding downstream 52762 19548663 ~ 19602639 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding downstream 165191 19661092 ~ 19664491 (+)
G184718 NA non-coding downstream 207734 19703635 ~ 19704250 (+)
G184823 NA non-coding downstream 312812 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 425570 19921471 ~ 19947483 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 2648 19486328 ~ 19487784 (+)
adgrl4 adgrl4,LOC102783218 other upstream 220171 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 1081375 18166622 ~ 18409057 (+)
G183549 NA other upstream 1693813 17795445 ~ 17796619 (+)
ect2 ect2,LOC107674529,LOC107718889 other upstream 1708618 17754176 ~ 17781814 (+)
LOC113546543 NA other downstream 30976 19526877 ~ 19548212 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other downstream 36180 19532081 ~ 19554969 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 199326 19695227 ~ 19700274 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 332085 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 340244 19836145 ~ 19845238 (+)

Expression


Co-expression Network