ptk7a (ptk7,LOC108411955,LOC107702250,LOC107588446,LOC107732247)


Basic Information

Item Value
gene id ptk7a
gene name ptk7,LOC108411955,LOC107702250,LOC107588446,LOC107732247
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17240492 ~ 17277455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929441.2
ttagaCACTAAAGGCGGGGCTTTTCGCTGAGACACAAGCGGTGGGAGCAGTCGCGACTAACCAGATGTAGCTATACTCGATCACAAAGTgtgttagtattattattaatttttgtgACCTGACGTTTTTACGGACATCTGGTGCCTGGACTTCCTGCCAAACCAGACGCAGCTGGAGGGAGGAGAGCAGGAGTGGCCAAAGATCCCGACCTCCAGCGACATTACAGGGAGGAAAGTTGGAGGTAATGAAAGCAGCATGGAGCTCCTGCCACATCCCCCCTGCGGATCTGTAGCTCCTCTGTAGCTCCTCTGTAGCACGAATCCAGCTCTCCGCCTGTAACTCGCTTCACTTCACCTAGTCTAAGAAGAAGCAGACGTGGGGAAAGAAGAGGCAGCTGGATTATTCATCCGATCTGATCCCGACCTGTTGCTAGGCTGTTGTTTCGCCGTTTCTGCCTGGGTTCAAGTTGAAACATGAGTTGGTCGATGAAGGAGAAAGCTCAGTGCCAGGAAAGCCGGACAAGCTCTGCTGCAGTGTGCACAATCGTCACGCTTCTGTGGCAAGCGCTTTGTGTACACTCTGCGTCCTTCCATTTCACCAAGGAGCCCAAATCCCAGGATGCATTGCACGGACGCAGTGCCATGTTGCGGTGCGAAGTGAACGATCCTAGCGGCATCGTCTACAGCTGGCTCCACAACGGCCAGCCCGTCTCTGACTCGGAGCGGCGCTTTCAGGAGGGAGGCAACCTGAAGTTCACTGCCATCGACCGAATCCTGGACTCCGGCAACTTCCAGTGCGTGGCTACCAAAAACTCTACAGGAGAAGAGGAGCGCACAAGCGAAGCCAATTTTAACATCAAGTggTTGGAAAGTGGTGGAGTGATACTTCAGAGTCCAGCCTCGGAGGCAGAGATCAAGAGCTCCTCGTCCGTCGTATTACTCTGTAACATTGACGGACACCCGCGGCCTGGAAATCGCTGGTACAGAGACGGAGTGCTTTTAGCAGAGAAGAGCCACAAGATCAACAATAAAGAGCGAACGCTGACTCTCCCCAGTGCCAGTCCTGATGATAACGGCGTCTACTACTGCTGTGCCAAAAACGCTGCCGGCCAAGTGTGCAGCAGCACCAACTTCACCCTTAACATCATagATAAGAGTTACCCCCAGCCAGTGGTGAAGCCTGAGGATCTGGTGGTGCTGAGAAACGAGGAGGCGCATTTTCACTGCCAGTTCACGGCTGAGCCGCAGCCCACGGTAGAGTGGTACCACGAGAATGAGCAGATCTCCAACAAGAGTCGTGTGTTCCTGCTCAACAACGGCTCACTCTTCATCAGCCAGGTGAAGCAGCGCAACACTGGCCGCTACCGGTGTGTTGCTAAGGGCCTCCGCGGCCCGTCCGTCTCACTAGAGGCCTTTCTGAGAATAGCGGAAATCGATGACATGCAGGCTCGACAGTCTCGTGTCTTCACGGCCAACTCTCTGGAGCGAGTCTCCTGCCGACCTCCTCGCGGACATCCCGAGCCCGAGGTGTGGTGGGCGGCGGGTCAGCGTGTGCCCACTGAGGGGCGCGTGTTCCAGGATGGTCTGGATCTGGTGTTCAGCCCGACGCGCGCAGAGGACTCAGGCATCTACACCTGTTTCGCCCAGAACAAAGCTGGACAGAAGAAACAGGAACTCACCGTCACTGTGGCCACTCCACCTGAATGGGTACAGAAGCCAGATGCAGAGAGCCAGCTGGAAGAGGGGCATGCTGGGTATTTACACTGTTACACCCGTGCCACACCTGACCCTGAGGTCACATGGTTTCGCAACATGCAGCCAATCAACGCCGAGgaTGCACGTTTTAAGCAGTTCCCCAATGGAAGCCTGCGTATCAACAGTGTGGAAGTGTACGATGGCCATGTGTACAACTGCGAGAGTAAAAACGAAGCAGGGAAAATAAACGCCTACGCCAGAGTCACTGTACTGgAGCGGCTGAAGTTCACCCCGACGCCACGGTCATTACAGTGCCAGGAGCTGGATAAGGAGGGCAGCCTGCAGTGTTCCGCTAAAGGCCGTCTGCCTCCCACCATCCGCTGGACGAAAGCTGACGGCAGTGAGATCCCAGCTTGGGTGGAACAGAATGGCGGCACTCTGCACTTCTTTAAAGTGACGCGGGCGGATGCAGGGAACTACACCTGTGTGGCGTCCAACAGTCTGCAAGGAGAGATCCGTGCTGTGGTTCAGCTCACTGTCGCAGTGTATGTGGCATTTAAGCTAAAGCCAGAGAACACTACAGTGTATCAGGGTCACACTGCCGTGCTGCACTGCCAAGCCACAGGAGATCCTTCACCCATCATCCAGTGGAAGAAGAAAGACAAATTCCTCGAGGCCAACAAGAgcaggtTCCAGACAATGCCCAATGGCTCTCTGGTTATTCATGACGTCAGCACAGAGGACACAGGCAGCTACACCTGTATTGCTGGGAACAGCTGTAACATCGCACACACATCCGCAGAGCTCTACGTCGTGGAGAAGCCAGTGCAGCACACACTGGCAAACGATGAGAAAGCTCCCTACAAGATGATCCAGACCGTCGGCCTGTCGGTGGGTGCGGCTGTTGCTTACATCATCGTCGTGCTCGGCCTCATGTTCTACTGCAAGCAACGACGCAAAGCCAAGAGACTGCAGAAGGGCCAGGACAAAGAGGAGCCCGAGATGGAGTGTCtcaatgGGGGTGGCGTGCAGCAGAACGGCCAACCCACAGCCGAGATTCAGGAGGACGTTCCGCTGAACACCGTGTCTTCTACTGGGAACAACAAACGCCACAGCACTCAGGACAAGCTGCAGTTCCCCCGTGCCAGCCTGCAAGCCATCACAACTCTGGGTAAGGGAGAGTTTGGCGAGGTGCTCCTGGCCAAGGTGAAGACCGGTACGGACGAGGAAGAAACGGCGGTTCTAGTCAAGAGTCTGCAGACCAGAGATGAGCAGGTGCAGTCAGATTTTCGACGGGAATGTGAGATGTTTGCTAAACTCAGCCACCCGAACATCACACGTCTGCTGGGCATGTGCAGAGAAGCAGAGCCATACTACATGATCCTGGAGTACGCTGATATGGGTGACCTGAAACAGTACCTAAAAATCTCCAAAAGTAAAGATGAGAAGGTGAAAGTGCATCCACTCAGCACCAAGCAAAAGGTGTCGGTGTGTCTGCAGGTTGCTCGGGGGATGGAGCACCTCTCCAATCAGCGCTTTGTCCACAGGGACCTGGCTGCACGCAACTGCCTGATTAGTGCCAAGAGGCAGGTCAAAGTGTCTGCTCTGGGCCTCAGCAAAGACGTCTACAACagTGAGTATTACCATTACCGTCAGGCCTGGATCCCCCTGCGCTGGCTTCCATCCGAGTCTGTGTTTGAGGACGACTTCTCCACTAAGACGGATGTGTGGTCTTTTGGTGTGCTCATGTGGGAGGTTTTCAGCTTCGGAGAGCTGCCCTATGCTGACCTTGCTGAGGACAAGGTCCTGGAAGGTCTTCAGGAAGGGAAGCTGAAGCTGTCCCCTCCGCACGGCTGTCCATCTCGCATCTACAAGCTGATGCTACGCTGCTGGGCCTCCAGTCCCAAAGACAGAGTGTCGTTTAGCGACATCGTCACGGCCCTCGGCGACCTTCCCTCTGAGAGCAAAGTGTGAGTGAGGGTTCGGCTGTTGGAGTATCACATCCATAGTCTTTAGCTGTTAAGAAGCTTCAGTCTCCTCCTTCTCAAAGGAAAAACAGACTGCTTCTGAACAAAGGCTGGatcttgtgtgtttttctgagtCTCTTTTCTGCCTATCAATACAGCCCATGTGTGGAGTTTGTGAGGAAGTTACTTTATATGCTGGAATGAAcaaactaagaaaaaaataagaatgaaagaaaaagctaCATTAGTGGAAATAACTGTTATTTCAGCTCTGCTCGTGGAGCAGGACGAGAACCTGTACAGTCACACCAAGTGCATTTGTTATATAGACTGTTAATACCATGCACTGAccagttttactttttttctgtattatagAAGGATTGTTCCAGGAACctagtaatttattttaaaggtcctgttttttaatgtttgtactGTACAGAAAGGTACTGTTTATATTCATCGTGTTATTTgttagctaattttttttttaaatccagaggAAAGCT

Function

symbol description
ptk7 Predicted to enable cell adhesion molecule binding activity. Involved in several processes, including actin cytoskeleton reorganization; cellular response to retinoic acid; and positive regulation of canonical Wnt signaling pathway. Located in cell-cell junction.

NR:

description
PREDICTED: inactive tyrosine-protein kinase 7-like isoform X1

GO: NA

KEGG:

id description
K05127 PTK7, CCK4; PTK7 protein tyrosine kinase 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929441.2 True 4173 mRNA 0.53 21 17240492 17277455

Neighbor

gene id symbol gene type direction distance location
soul4 LOC108270966,LOC108411954 coding upstream 4804 17224426 ~ 17235688 (+)
tle2b LOC108271164,LOC108430094,LOC107676970,LOC107719559 coding upstream 173536 17000105 ~ 17066956 (+)
trnak-cuu_26 NA coding upstream 210548 17029872 ~ 17029944 (+)
tle5 aes,LOC108271216,LOC108430095,LOC107593322,LOC107586404 coding upstream 264915 16949748 ~ 16975577 (+)
LOC113527868 LOC108271202,LOC108430096,LOC105011594,LOC107717982,LOC107699416,LOC106584406,LOC106613802,LOC107586405 coding upstream 293034 16912572 ~ 16947458 (+)
mark1 mark1,LOC108271264,LOC108411950 coding downstream 3794 17281249 ~ 17331250 (+)
commd2 commd2 coding downstream 168945 17446400 ~ 17449781 (+)
wwtr1 wwtr1 coding downstream 176327 17453782 ~ 17497179 (+)
LOC113528887 LOC108271171,LOC108439433 coding downstream 229752 17507207 ~ 17532678 (+)
cp cp,LOC100533122 coding downstream 256989 17534444 ~ 17545067 (+)
G182932 NA non-coding upstream 156963 17079637 ~ 17083529 (+)
G182910 NA non-coding upstream 250973 16989319 ~ 16989519 (+)
G182906 NA non-coding upstream 279193 16960659 ~ 16961299 (+)
LOC117598387 NA non-coding upstream 383355 16852408 ~ 16857137 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding upstream 514965 16708625 ~ 16725527 (+)
LOC113535983 NA non-coding downstream 139275 17416730 ~ 17423320 (+)
G183032 NA non-coding downstream 173002 17450457 ~ 17450736 (+)
G183058 LOC108270510 non-coding downstream 300187 17577642 ~ 17583785 (+)
G183478 NA non-coding downstream 447308 17724763 ~ 17725260 (+)
G183566 NA non-coding downstream 610672 17888127 ~ 17888353 (+)
LOC113528769 klc4 other upstream 17960 17196280 ~ 17222532 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other upstream 51177 17121899 ~ 17189315 (+)
G182877 NA other upstream 317570 16913258 ~ 16922922 (+)
G182819 NA other upstream 655549 16583303 ~ 16584943 (+)
LOC113532318 NA other upstream 983710 16255047 ~ 16256782 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other downstream 88243 17365698 ~ 17411425 (+)
LOC113536271 ankub1 other downstream 162341 17439796 ~ 17446248 (+)
anos1b LOC108271321,LOC108439428 other downstream 321009 17598464 ~ 17636395 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other downstream 394716 17672171 ~ 17751502 (+)
ect2 ect2,LOC107674529,LOC107718889 other downstream 476721 17754176 ~ 17781814 (+)

Expression


Co-expression Network