mfn1b (mfn1b,LOC108270971,LOC108443893,LOC107701405,LOC107661155)


Basic Information

Item Value
gene id mfn1b
gene name mfn1b,LOC108270971,LOC108443893,LOC107701405,LOC107661155
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6900248 ~ 6913318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930265.2
tgtgtgtgtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgtctatgggtCAAATATTTTCCTGTAGCTACCGCTAGTATGTCAAATTCAAAGAGGATATAAGCAGTCTCTAAATCGGTTCAGCACATCTTCCTTGTTTGGAGACTTTTTTAGGTAAAGACATGGACCAAGAGGACCGCTCTCCTCTCAAACACTTTGTCCTGGCCAAAAAGAAGATTGGTGATGTTTTTGAGCAGCTGCTTAATTATGTCCAGGACGGTTCACAGTTTGTTAaagATACATGTTATAATGAATCGTTAGAGCACATTGCAAATAGAGATCAGTTGGAGGAGATAGAGGCGTACGCCAGTAAATTAGCAGTTATAAAAGAGGTGCTGGCTCGCAGACATATGAAGGTGGCCTTTTTTGGCAGAACGAGTAATGGAAAGAGCACCGTTATCAACGCCATGCTGCGTGACCGGGTGATGCCCAGCGGCATCGGCCACACAACTAACTGCTTTTTGAGCGTTGAAGGCACTGATGAAGATAGGGCTTATCTGAAGACTGAGGGAtcagaggaagagaagagcatCAAGACTGTCAATCAGCTGGCTCATGCTCTGCACATGGATGAGAGTCTTGATGCTGGCTGTCTGGTTAAGGTCTTCTGGCCCAAAATGAAGTGCGCTCTTCTTAGGGATGACCTAGTACTCATGGACAGTCCTGGGACTGATGTCACCACACAGTTGGACAGCTGGATAGACAAGTTCTGTCTGGAtgctgatgtgtttgtgttggtggCCAACTCTGAATCCACACTAATGAACACGGAGAAACATTTCTTCCACAAAGTAAACGAACGCCTTTCAAAGCCCAACATTTTCATCCTGAATAATCGCTGGGATGCTTCCGCCTCTGAACCTGAATACATGGAGGATGTCCGTAAGCAGCACATGGACCGATGTGTGAACTTCCTGGTGGAGGAGCTCAGGGTGGTGGATCGCCAAAAGGCTCCCAATCATATCTTCTTTGTGTCTGCCAAGGAGGTGCTGAACTCCAGAATGCAGCGGGCGCAGGGTATGCCAGAGTCTGGTGGAGCATTAGCAGAAGGCTTCCAGGAGAGACTGAAGGAGTTCCAGAACTTTGAGAGGACGTTTGAGGAGTGTATCTCGCAGTCAGCAGTGAAAACAAAGTTTGAGCAGCACACAATCAGGGCAAAGCAGATCACTGAATGTGTTAAAGGCATCATGGATCAAATCCACATTGCTGCCGCTGAGAAGAGGGTGGCCTCTctggaggagagagagtatcTGATCGACCGCTTGGAGTTTGTCCGAAATCAGCTCAACCTTCTCATTGAGGatatcaaaaagaaaattaagCTGGTCTCAGAGCAGGTGGCCAAACAGGTATCGAATGCCATGGCAGAGGAGATCTGTCGACTCTCAGTGCTCATAGACGAGTTTCATTCAGACTTCCATCCATCTCCACACGTACTAAAGATCTACAAATCAGAGCTGCTTAATCATGTGGAGAAGGGAATGGGAAAGAATCTGGCTTTCCGCTGCTCTAACGCCGTCAACGCTTCTGTGCAGTCCTCTCAGAAAGAAATGATCGAATGTTTGCAGCCTTTGCTGCCCCCTGATGTTCAGAGCCAGATCCACATGCTAATTCCTTCCAGAAAGTTTGACCTCAGCTACGACCTGAACTGCGCCACGCTCTGCGCCGATTTCCAGGAGAACATCGAGTTTCAGTTCTCTCTTGGCTGGACTGCTCTGGTCAGCCGTTTCCTCGGCCCGGCCAACGCCAAGCGCGCCCTCATGCTGGTGGATCAAAACCTCCAGCTCACACGTCCTTTGGCCACCACTCCAACAAGTGGTGCCATTGCACAGGCTCCACCCCCTAGAGCTGCTGCGGGTACTCCGAACCAATCCCAGGCTGTGATGAGCCAGGAGGAGCTGATGATGTCTATGGCTGCAAATCTGGCTTCCATCACCTCACGCACTTCCATGAGTGTGGTCATTGTCGGGGGAGTGGTGTGGAGGATGATAGGCTGGAGAGTCATCGCTCTATCCTTGAGTCTTTATGGCATGGTGTACTTATATGAGAGACTCACTTGGACCACCAAGGCTAAGGAGAGAGCACTGAAGAAGCAATTTGTAGATTACGCCACCGAGAAACTCCAGATGATCGTCAGCTTCACCAGTTCAAACTGCAGCCACCAAGTGCAGCAGGAGATAGCCAGCACGTTTGCCAGGCTGTGCCAGCAGGTGGATGTAACCCAACGGGACCTGGAGAGAGAAATCAACCGGCTGACGACAAAGATTCAGCAGCTGGAGACGGTCCAGAGCAGCTCCAAATCACTTAGACACAAAGCCACAGATTTGGAGAGGCAGCTGGAGAGCTTCACGAGCCAGTATCTCCAGCCACAGAAATGAACTCCCCATTCTCACTCAGCGCCTCGGTCTCAGGCCACCTGCCACAggacttttgttttattccaccAGGAAGGATCCACACAAGACACGTAGCAGCAGTGTATCTGCACTTTCAAAAAGGTCATCAGTGAAAAACTgtcacatacatttacaatgtCATGGGTTGGTTTCTGGCTTTCGTACTATAAACAATTGAGTTGTGGTTTGATTGCGGTGTCTAAATTGAATCTGTTTTGTAATGATATCTGATTGACTATCTCTTAAATCACACTACTGTAAGaactgaaaggaaaaacatgaaaacaatgaCGAAAAGGGCTGAACTGTAAAGTTCTTCATGGCACTTCTCAGaacactgtaaagcagtttttACTAAACAAAACCAGATTACTTTGTTCACATCCAGCTGACTTGAAACAAAGCCCTTTTCTGAACCACGTTTTCTAGAAGGGAAAATTCAAGAAGTGTTTATCTGAAATCAGTATTTTGTAGATAGCCTTTTGATCAGTGCCTATTTTCGATATGTTCCTCTAAATCCTTTCTATGATTCTAACCCATTGTCAAGAGTTTGTTTTTGGACTCTGTGctttgtaaaaatgtgaaatgttcagatgaaaaaatcagtttaaaaaattagtagagaacataattaaaatattaccCATGAATGTGTATAA
>XM_026930266.2
tgtgtgtgtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgtctatgggtCAAATATTTTCCTGTAGCTACCGCTAGTATGTCAAATTCAAAGAGGATATAAGCAGTCTCTAAATCGGTTCAGCACATCTTCCTTGTTTGGAGACTTTTTTAGGTAAAGACATGGACCAAGAGGACCGCTCTCCTCTCAAACACTTTGTCCTGGCCAAAAAGAAGATTGGTGATGTTTTTGAGCAGCTGCTTAATTATGTCCAGGACGGTTCACAGTTTGTTAaagATACATGTTATAATGAATCGTTAGAGCACATTGCAAATAGAGATCAGTTGGAGGAGATAGAGGCGTACGCCAGTAAATTAGCAGTTATAAAAGAGGTGCTGGCTCGCAGACATATGAAGGTGGCCTTTTTTGGCAGAACGAGTAATGGAAAGAGCACCGTTATCAACGCCATGCTGCGTGACCGGGTGATGCCCAGCGGCATCGGCCACACAACTAACTGCTTTTTGAGCGTTGAAGGCACTGATGAAGATAGGGCTTATCTGAAGACTGAGGGAtcagaggaagagaagagcatCAAGACTGTCAATCAGCTGGCTCATGCTCTGCACATGGATGAGAGTCTTGATGCTGGCTGTCTGGTTAAGGTCTTCTGGCCCAAAATGAAGTGCGCTCTTCTTAGGGATGACCTAGTACTCATGGACAGTCCTGGGACTGATGTCACCACACAGTTGGACAGCTGGATAGACAAGTTCTGTCTGGAtgctgatgtgtttgtgttggtggCCAACTCTGAATCCACACTAATGAACACGGAGAAACATTTCTTCCACAAAGTAAACGAACGCCTTTCAAAGCCCAACATTTTCATCCTGAATAATCGCTGGGATGCTTCCGCCTCTGAACCTGAATACATGGAGGATGTCCGTAAGCAGCACATGGACCGATGTGTGAACTTCCTGGTGGAGGAGCTCAGGGTGGTGGATCGCCAAAAGGCTCCCAATCATATCTTCTTTGTGTCTGCCAAGGAGGTGCTGAACTCCAGAATGCAGCGGGCGCAGGGTGGAGCATTAGCAGAAGGCTTCCAGGAGAGACTGAAGGAGTTCCAGAACTTTGAGAGGACGTTTGAGGAGTGTATCTCGCAGTCAGCAGTGAAAACAAAGTTTGAGCAGCACACAATCAGGGCAAAGCAGATCACTGAATGTGTTAAAGGCATCATGGATCAAATCCACATTGCTGCCGCTGAGAAGAGGGTGGCCTCTctggaggagagagagtatcTGATCGACCGCTTGGAGTTTGTCCGAAATCAGCTCAACCTTCTCATTGAGGatatcaaaaagaaaattaagCTGGTCTCAGAGCAGGTGGCCAAACAGGTATCGAATGCCATGGCAGAGGAGATCTGTCGACTCTCAGTGCTCATAGACGAGTTTCATTCAGACTTCCATCCATCTCCACACGTACTAAAGATCTACAAATCAGAGCTGCTTAATCATGTGGAGAAGGGAATGGGAAAGAATCTGGCTTTCCGCTGCTCTAACGCCGTCAACGCTTCTGTGCAGTCCTCTCAGAAAGAAATGATCGAATGTTTGCAGCCTTTGCTGCCCCCTGATGTTCAGAGCCAGATCCACATGCTAATTCCTTCCAGAAAGTTTGACCTCAGCTACGACCTGAACTGCGCCACGCTCTGCGCCGATTTCCAGGAGAACATCGAGTTTCAGTTCTCTCTTGGCTGGACTGCTCTGGTCAGCCGTTTCCTCGGCCCGGCCAACGCCAAGCGCGCCCTCATGCTGGTGGATCAAAACCTCCAGCTCACACGTCCTTTGGCCACCACTCCAACAAGTGGTGCCATTGCACAGGCTCCACCCCCTAGAGCTGCTGCGGGTACTCCGAACCAATCCCAGGCTGTGATGAGCCAGGAGGAGCTGATGATGTCTATGGCTGCAAATCTGGCTTCCATCACCTCACGCACTTCCATGAGTGTGGTCATTGTCGGGGGAGTGGTGTGGAGGATGATAGGCTGGAGAGTCATCGCTCTATCCTTGAGTCTTTATGGCATGGTGTACTTATATGAGAGACTCACTTGGACCACCAAGGCTAAGGAGAGAGCACTGAAGAAGCAATTTGTAGATTACGCCACCGAGAAACTCCAGATGATCGTCAGCTTCACCAGTTCAAACTGCAGCCACCAAGTGCAGCAGGAGATAGCCAGCACGTTTGCCAGGCTGTGCCAGCAGGTGGATGTAACCCAACGGGACCTGGAGAGAGAAATCAACCGGCTGACGACAAAGATTCAGCAGCTGGAGACGGTCCAGAGCAGCTCCAAATCACTTAGACACAAAGCCACAGATTTGGAGAGGCAGCTGGAGAGCTTCACGAGCCAGTATCTCCAGCCACAGAAATGAACTCCCCATTCTCACTCAGCGCCTCGGTCTCAGGCCACCTGCCACAggacttttgttttattccaccAGGAAGGATCCACACAAGACACGTAGCAGCAGTGTATCTGCACTTTCAAAAAGGTCATCAGTGAAAAACTgtcacatacatttacaatgtCATGGGTTGGTTTCTGGCTTTCGTACTATAAACAATTGAGTTGTGGTTTGATTGCGGTGTCTAAATTGAATCTGTTTTGTAATGATATCTGATTGACTATCTCTTAAATCACACTACTGTAAGaactgaaaggaaaaacatgaaaacaatgaCGAAAAGGGCTGAACTGTAAAGTTCTTCATGGCACTTCTCAGaacactgtaaagcagtttttACTAAACAAAACCAGATTACTTTGTTCACATCCAGCTGACTTGAAACAAAGCCCTTTTCTGAACCACGTTTTCTAGAAGGGAAAATTCAAGAAGTGTTTATCTGAAATCAGTATTTTGTAGATAGCCTTTTGATCAGTGCCTATTTTCGATATGTTCCTCTAAATCCTTTCTATGATTCTAACCCATTGTCAAGAGTTTGTTTTTGGACTCTGTGctttgtaaaaatgtgaaatgttcagatgaaaaaatcagtttaaaaaattagtagagaacataattaaaatattaccCATGAATGTGTATAA
>XM_034308480.1
gtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgtctatgggtCAAATATTTTCCTGTAGCTACCGCTAGTATGTCAAATTCAAAGAGGATATAAGCAGTCTCTAAATCGGTAAAGACATGGACCAAGAGGACCGCTCTCCTCTCAAACACTTTGTCCTGGCCAAAAAGAAGATTGGTGATGTTTTTGAGCAGCTGCTTAATTATGTCCAGGACGGTTCACAGTTTGTTAaagATACATGTTATAATGAATCGTTAGAGCACATTGCAAATAGAGATCAGTTGGAGGAGATAGAGGCGTACGCCAGTAAATTAGCAGTTATAAAAGAGGTGCTGGCTCGCAGACATATGAAGGTGGCCTTTTTTGGCAGAACGAGTAATGGAAAGAGCACCGTTATCAACGCCATGCTGCGTGACCGGGTGATGCCCAGCGGCATCGGCCACACAACTAACTGCTTTTTGAGCGTTGAAGGCACTGATGAAGATAGGGCTTATCTGAAGACTGAGGGAtcagaggaagagaagagcatCAAGACTGTCAATCAGCTGGCTCATGCTCTGCACATGGATGAGAGTCTTGATGCTGGCTGTCTGGTTAAGGTCTTCTGGCCCAAAATGAAGTGCGCTCTTCTTAGGGATGACCTAGTACTCATGGACAGTCCTGGGACTGATGTCACCACACAGTTGGACAGCTGGATAGACAAGTTCTGTCTGGAtgctgatgtgtttgtgttggtggCCAACTCTGAATCCACACTAATGAACACGGAGAAACATTTCTTCCACAAAGTAAACGAACGCCTTTCAAAGCCCAACATTTTCATCCTGAATAATCGCTGGGATGCTTCCGCCTCTGAACCTGAATACATGGAGGATGTCCGTAAGCAGCACATGGACCGATGTGTGAACTTCCTGGTGGAGGAGCTCAGGGTGGTGGATCGCCAAAAGGCTCCCAATCATATCTTCTTTGTGTCTGCCAAGGAGGTGCTGAACTCCAGAATGCAGCGGGCGCAGGGTATGCCAGAGTCTGGTGGAGCATTAGCAGAAGGCTTCCAGGAGAGACTGAAGGAGTTCCAGAACTTTGAGAGGACGTTTGAGGAGTGTATCTCGCAGTCAGCAGTGAAAACAAAGTTTGAGCAGCACACAATCAGGGCAAAGCAGATCACTGAATGTGTTAAAGGCATCATGGATCAAATCCACATTGCTGCCGCTGAGAAGAGGGTGGCCTCTctggaggagagagagtatcTGATCGACCGCTTGGAGTTTGTCCGAAATCAGCTCAACCTTCTCATTGAGGatatcaaaaagaaaattaagCTGGTCTCAGAGCAGGTGGCCAAACAGGTATCGAATGCCATGGCAGAGGAGATCTGTCGACTCTCAGTGCTCATAGACGAGTTTCATTCAGACTTCCATCCATCTCCACACGTACTAAAGATCTACAAATCAGAGCTGCTTAATCATGTGGAGAAGGGAATGGGAAAGAATCTGGCTTTCCGCTGCTCTAACGCCGTCAACGCTTCTGTGCAGTCCTCTCAGAAAGAAATGATCGAATGTTTGCAGCCTTTGCTGCCCCCTGATGTTCAGAGCCAGATCCACATGCTAATTCCTTCCAGAAAGTTTGACCTCAGCTACGACCTGAACTGCGCCACGCTCTGCGCCGATTTCCAGGAGAACATCGAGTTTCAGTTCTCTCTTGGCTGGACTGCTCTGGTCAGCCGTTTCCTCGGCCCGGCCAACGCCAAGCGCGCCCTCATGCTGGTGGATCAAAACCTCCAGCTCACACGTCCTTTGGCCACCACTCCAACAAGTGGTGCCATTGCACAGGCTCCACCCCCTAGAGCTGCTGCGGGTACTCCGAACCAATCCCAGGCTGTGATGAGCCAGGAGGAGCTGATGATGTCTATGGCTGCAAATCTGGCTTCCATCACCTCACGCACTTCCATGAGTGTGGTCATTGTCGGGGGAGTGGTGTGGAGGATGATAGGCTGGAGAGTCATCGCTCTATCCTTGAGTCTTTATGGCATGGTGTACTTATATGAGAGACTCACTTGGACCACCAAGGCTAAGGAGAGAGCACTGAAGAAGCAATTTGTAGATTACGCCACCGAGAAACTCCAGATGATCGTCAGCTTCACCAGTTCAAACTGCAGCCACCAAGTGCAGCAGGAGATAGCCAGCACGTTTGCCAGGCTGTGCCAGCAGGTGGATGTAACCCAACGGGACCTGGAGAGAGAAATCAACCGGCTGACGACAAAGATTCAGCAGCTGGAGACGGTCCAGAGCAGCTCCAAATCACTTAGACACAAAGCCACAGATTTGGAGAGGCAGCTGGAGAGCTTCACGAGCCAGTATCTCCAGCCACAGAAATGAACTCCCCATTCTCACTCAGCGCCTCGGTCTCAGGCCACCTGCCACAggacttttgttttattccaccAGGAAGGATCCACACAAGACACGTAGCAGCAGTGTATCTGCACTTTCAAAAAGGTCATCAGTGAAAAACTgtcacatacatttacaatgtCATGGGTTGGTTTCTGGCTTTCGTACTATAAACAATTGAGTTGTGGTTTGATTGCGGTGTCTAAATTGAATCTGTTTTGTAATGATATCTGATTGACTATCTCTTAAATCACACTACTGTAAGaactgaaaggaaaaacatgaaaacaatgaCGAAAAGGGCTGAACTGTAAAGTTCTTCATGGCACTTCTCAGaacactgtaaagcagtttttACTAAACAAAACCAGATTACTTTGTTCACATCCAGCTGACTTGAAACAAAGCCCTTTTCTGAACCACGTTTTCTAGAAGGGAAAATTCAAGAAGTGTTTATCTGAAATCAGTATTTTGTAGATAGCCTTTTGATCAGTGCCTATTTTCGATATGTTCCTCTAAATCCTTTCTATGATTCTAACCCATTGTCAAGAGTTTGTTTTTGGACTCTGTGctttgtaaaaatgtgaaatgttcagatgaaaaaatcagtttaaaaaattagtagagaacataattaaaatattaccCATGAATGTGTATAA

Function

symbol description
mfn1b Predicted to enable GTPase activity. Predicted to be involved in mitochondrial fusion and mitochondrion localization. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be intrinsic component of mitochondrial outer membrane. Orthologous to human MFN1 (mitofusin 1).

NR:

description
PREDICTED: mitofusin-1

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0008053 mitochondrial fusion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K21356 MFN1; mitofusin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930265.2 True 3115 mRNA 0.47 19 6900248 6913318
XM_026930266.2 False 3100 mRNA 0.47 19 6900248 6913318
XM_034308480.1 False 3066 mRNA 0.47 18 6900248 6913305

Neighbor

gene id symbol gene type direction distance location
shroom2b LOC108271435,LOC105905657 coding downstream 13835 6861351 ~ 6886413 (-)
clcn4 clcn4,LOC108443897,LOC103025096,LOC107552404,LOC107705120,LOC107558374 coding downstream 55003 6831248 ~ 6845245 (-)
LOC113536768 LOC108270562 coding downstream 83535 6809823 ~ 6816713 (-)
swap70a LOC108271193 coding downstream 93218 6794539 ~ 6807030 (-)
adma adm coding downstream 249113 6648748 ~ 6651135 (-)
si:ch73-100l22.3 LOC108271015 coding upstream 27450 6940768 ~ 6954744 (-)
mafgb mafg,mafgb coding upstream 48318 6961636 ~ 6979476 (-)
pycr1b pycr1,pycr1b,LOC107572052,LOC107564555,LOC108443889,LOC108236293 coding upstream 74985 6988303 ~ 6995568 (-)
LOC113536680 LOC108270653 coding upstream 95980 7009298 ~ 7011515 (-)
aspscr1 aspscr1 coding upstream 105487 7018805 ~ 7055924 (-)
G177097 NA non-coding downstream 161640 6738321 ~ 6738608 (-)
LOC117598400 NA non-coding downstream 310952 6579004 ~ 6589296 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding downstream 348666 6551325 ~ 6551582 (-)
G176992 eif4g2,LOC108433007 non-coding downstream 348986 6550914 ~ 6551262 (-)
G176990 NA non-coding downstream 355178 6543999 ~ 6545070 (-)
G177374 notum non-coding upstream 145214 7058532 ~ 7059550 (-)
G177404 NA non-coding upstream 224311 7137629 ~ 7138904 (-)
LOC117598441 NA non-coding upstream 242910 7156228 ~ 7157621 (-)
G177448 NA non-coding upstream 354243 7267561 ~ 7271271 (-)
G177455 NA non-coding upstream 376567 7289885 ~ 7290092 (-)
LOC113536608 LOC108270551 other downstream 38900 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1191944 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1703430 5139610 ~ 5196818 (-)
G176307 NA other downstream 1819353 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2395919 4498946 ~ 4504329 (-)
si:dkey-56d12.4 LOC108270721 other upstream 567104 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 667116 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 762598 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1331331 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 1333385 8246703 ~ 8246775 (-)

Expression


Co-expression Network