commd2 (commd2)


Basic Information

Item Value
gene id commd2
gene name commd2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17446400 ~ 17449781 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930276.2
GCAGTCGGATTCTGTTGCAGCGCACGAGCACCAGATCATGTGACTTACTAACAGCAAACAGTGGCAGGCAGATTATCTGTCTGCGTTTATTAGAAAcaattttatgttatgttttaggTATCATATAGTCAGTCATTATGTTGTTAGTGTTATCTGACGAGCATAAGGAGCACCTGGGCTTTTTATCTGACGTGGACCCAGCGGTTGTTGGCGAGTTTGGCAGAATTGCTGTGGAGTTCCTGAAGAAAGGCTCAAACCCTAAAATCTATGAGGGGGCAGCAAGAAAGCTGAGTGTCCCAGCAGAGACTGTGCAGCATGGTGTTGAGGGACTGATGTTTATTCTTACTGAAAGTTCAAAGCTTATGATCTCGGAAGTGGACTTTCAGGACTCGGTGTTGGTGCTGGGTTTTTCAGAGGAGCTCAATAAACTCCTGCTGCAGCTGTATTTGGAAAACAGGAAGGAGATCCGTCAGATTCTGAGTGAACTCGCCCCATCTCTGCCCCGCTATCACAACCTCGAGTGGCGCCTTGATGTACAGCTGGCCAGCAGGGCTCTGAGACAGCAGGTGAAACCTACAATCACCCTCAAGCTCCATCTGGAGAATGAAGACACGCGGAGCGCCCGTGTTCTGCAGACAGACCCCGCCACACTGCTGCATCTCATCCGTGAGCTGGAGCGAGCGCTCGCTGAGGTCAAGAGCAACCACTGCCGCCGAATCCTCCGCAACATCAAATAGGATTGTACGTAAAGTGGACACTAGATGGTGTGAAAGGTCACCTAAAGCAGTGTTCAGGAGCACTTCTATTATGCACATTTTACAGCAGTTTGAGCTCTTAGTTAATGAACTGGTGAGTCAGGTGTGTTGTAacaggaaaaacaggaaaatgtgCAGTTTAGGACCAGGCACATGAACTCTGATTGAAGTGTTAGATACAGTTAAGACTTAAGTGCACTTGAGGTCCTTCAGCGTCATCACCTGAATGAaaaacactcaacacacacttaAGAAAGATATGAATAATATTAGAGCTGGAGCATTAAtgattcatattttaatttgtatgacaatttatttgttctatggttattatattttgtcagtgtttttctttagTATCTGGAAAAATCCATATTTTTGGGACCATTTCATAACTTGATGAGGCTGAAGAGTTAAATTAATTTTCAGTttcaattttaataatgtttaaaaaattcattttctgtaaatctAAACTGAAGTGTGTAATGATAGAGAACAACTTGCTGTATTCTCATTAactgttttataaatacattaatacat

Function

symbol description
commd2 Orthologous to human COMMD2 (COMM domain containing 2).

NR:

description
COMM domain-containing protein 2 isoform X2

GO: NA

KEGG:

id description
K22558 COMMD2; COMM domain containing 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930276.2 True 1304 mRNA 0.42 5 17446400 17449781

Neighbor

gene id symbol gene type direction distance location
mark1 mark1,LOC108271264,LOC108411950 coding upstream 115150 17281249 ~ 17331250 (+)
ptk7a ptk7,LOC108411955,LOC107702250,LOC107588446,LOC107732247 coding upstream 168945 17240492 ~ 17277455 (+)
soul4 LOC108270966,LOC108411954 coding upstream 210712 17224426 ~ 17235688 (+)
tle2b LOC108271164,LOC108430094,LOC107676970,LOC107719559 coding upstream 379444 17000105 ~ 17066956 (+)
trnak-cuu_26 NA coding upstream 416456 17029872 ~ 17029944 (+)
wwtr1 wwtr1 coding downstream 4001 17453782 ~ 17497179 (+)
LOC113528887 LOC108271171,LOC108439433 coding downstream 57426 17507207 ~ 17532678 (+)
cp cp,LOC100533122 coding downstream 84663 17534444 ~ 17545067 (+)
senp5 LOC108270997 coding downstream 189008 17638789 ~ 17645112 (+)
phka2 phka2,LOC108439424,LOC107718215,LOC107715813 coding downstream 199154 17648935 ~ 17669132 (+)
LOC113535983 NA non-coding upstream 23080 17416730 ~ 17423320 (+)
G182932 NA non-coding upstream 362871 17079637 ~ 17083529 (+)
G182910 NA non-coding upstream 456881 16989319 ~ 16989519 (+)
G182906 NA non-coding upstream 485101 16960659 ~ 16961299 (+)
LOC117598387 NA non-coding upstream 589263 16852408 ~ 16857137 (+)
G183032 NA non-coding downstream 676 17450457 ~ 17450736 (+)
G183058 LOC108270510 non-coding downstream 127861 17577642 ~ 17583785 (+)
G183478 NA non-coding downstream 274982 17724763 ~ 17725260 (+)
G183566 NA non-coding downstream 438346 17888127 ~ 17888353 (+)
G183578 NA non-coding downstream 453004 17902785 ~ 17902984 (+)
LOC113536271 ankub1 other upstream 152 17439796 ~ 17446248 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other upstream 34975 17365698 ~ 17411425 (+)
LOC113528769 klc4 other upstream 223868 17196280 ~ 17222532 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other upstream 257085 17121899 ~ 17189315 (+)
G182877 NA other upstream 523478 16913258 ~ 16922922 (+)
anos1b LOC108271321,LOC108439428 other downstream 148683 17598464 ~ 17636395 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other downstream 222390 17672171 ~ 17751502 (+)
ect2 ect2,LOC107674529,LOC107718889 other downstream 304395 17754176 ~ 17781814 (+)
G183549 NA other downstream 345664 17795445 ~ 17796619 (+)
LOC113526284 naaladl2 other downstream 716841 18166622 ~ 18409057 (+)

Expression


Co-expression Network