rlbp1a (rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717)


Basic Information

Item Value
gene id rlbp1a
gene name rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8480856 ~ 8487330 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930280.2
CCTTCACTGAGTGCCTCAACGTCCCCCAGGCCATCTCTGCCTCATTCCTCATTCTGCATAGAAAGGGCTTTGTGTTTCCCTCTGGCTAAGTGTGTAAGTAGCTGCTGAAAGATCTGGAGATTATGGCTTCCACTGGAAATTTCCGCATGGTCTCAGAGGATGAGCAGGCCCTGCGCTCCAAACTTGAGCATCTGACTGTGAAAGATCACGGGCCAGTGTTTGGGCCATGTCAGAAGCTACCTGATCACACATTACAGAAGGCAAAGGACGAGCTGAACGAGACAGTGGAGAAGAGAGTGTCTGCAGTAAAGGAGCTGAGATCCCTGATCTGTGAGAAGGCTGAGAATAGGGACGACTTGTCCATGGACGTGAAGGAGAAATTTGGGAACAAACCAGATTCTCTGCTCCTGAGGTTCATCCGTGCGCGCAAGTTCGATGTGGCCAGGGCATATGAGCTCATGAAGGGTTATGTGCGTTTCCGACGTGACTACCCCGAGCTGTTTGAGAATTTGACCCCTGAAGCAGTGCGCAGTACCATCGAGGCTGGCTATCCACAAATACTTAGCACACGTGACAAGGATGGCCGTGTGGTGCTCCTTTTCAACATAGAGAACTGGGATTTGGAAGAGGTCACCTTTGATGAAACTCTGAGGGCATACTGTGTCATCCTGGAGAAACTTCTGGAAAATGAGGAGACTCAGATCAATGGCTTTGTACTCATTGAAAACTTTAAGGGCTTTACTATGCAGCATGCAGCTGGCATCAAACACACTGAGCTGAAAAAAATGGTGGACATGCTGCAGgACTCATTTCCTGCACGCTTCAAGGCCGTGCATGTGATTCACCAGCCTTGGTATTTCACAACCACTTACAATGTGGCTAAATCCTTCATGAAGAGCAAACTGCTAGAGAGGGTTTTTGTTCATGGTGACGATCTGGATGTTTACTTCAGAGACTTCAGTGCTGAAATCCTCCCTCCAGACTTCAGTGGGAAAGGGCCGAACTGTGATGGCAGAGAGACAGCAATCAAGCTGTTTGGCTCTGAAGACACAGCTCTTTAAATGACTCAAGTCAACACACATGCTAGACTGACCGacgtatatacagtataatgtagtACGTCCTCTAGGGAATATGAAAAGtggaaaagaaattttaaaattgtttaaaattttgaTGGACAGGAAGAATTGTACCATAGGAGAaaagataaacagtatacaatGGGAGCTCGCTTTGGaattacacacaaacaattgTTGTGGGTTTAAAAGAGACTTGACGTAATGGAGGTAATGACTGTTACTGTAGTCTGTGGCTTGCGATAGTAAAAATAGCCACATTAATATAGAAAATATGACCATTAACCCTGCATTTTTGACAAAGATTAAGACATACTGTGTACAtactcaaacatacacacactccacaatGAAGAATGCAAATTTTTGTATTCATTCTGAATTCATTTTGTTCTCCCTGTCTGATTTCATGATATAGATTGTAACTGGCAATgttcataataaaatatgactaatgaa

Function

symbol description
rlbp1a Predicted to enable phosphatidylinositol bisphosphate binding activity. Acts upstream of or within optokinetic behavior. Is expressed in brain; optic vesicle; and visual system. Human ortholog(s) of this gene implicated in Bothnia retinal dystrophy; Newfoundland cone-rod dystrophy; fundus albipunctatus; night blindness; and retinitis pigmentosa. Orthologous to human RLBP1 (retinaldehyde binding protein 1).
rlbp1 Predicted to enable phosphatidylinositol bisphosphate binding activity. Predicted to be involved in vitamin A metabolic process. Located in centrosome; cytosol; and nucleoplasm. Implicated in Bothnia retinal dystrophy; Newfoundland cone-rod dystrophy; fundus albipunctatus; night blindness; and retinitis pigmentosa.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007634 optokinetic behavior biological_process
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930280.2 True 1541 mRNA 0.44 8 8480856 8487330

Neighbor

gene id symbol gene type direction distance location
slc39a1 LOC108270705 coding upstream 3417 8472471 ~ 8477439 (+)
kif7 kif7,LOC107733953,LOC107749689 coding upstream 238731 8219886 ~ 8242125 (+)
mrps11 mrps11,LOC107594750 coding upstream 283165 8180998 ~ 8197691 (+)
LOC113536658 akap13 coding upstream 555117 7844673 ~ 7925739 (+)
si:ch211-106j24.1 LOC101154672,LOC108428483 coding upstream 686228 7781661 ~ 7794628 (+)
kbtbd13 kbtbd13 coding downstream 44905 8532235 ~ 8534139 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding downstream 77950 8565280 ~ 8571168 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding downstream 144493 8631823 ~ 8701565 (+)
snrpa1 snrpa1 coding downstream 223825 8711155 ~ 8717829 (+)
selenos selenos coding downstream 231197 8718527 ~ 8724082 (+)
G178067 NA non-coding upstream 39639 8408009 ~ 8441217 (+)
G178104 NA non-coding upstream 58256 8420187 ~ 8422600 (+)
G178046 NA non-coding upstream 168204 8310660 ~ 8312652 (+)
G178047 NA non-coding upstream 171338 8307307 ~ 8309518 (+)
G178039 NA non-coding upstream 190141 8289523 ~ 8290715 (+)
LOC113536702 LOC108271401 non-coding downstream 26801 8514131 ~ 8522122 (+)
G178170 NA non-coding downstream 56939 8544269 ~ 8544475 (+)
G178192 NA non-coding downstream 101490 8588820 ~ 8589555 (+)
G178260 NA non-coding downstream 320275 8807605 ~ 8808944 (+)
G178383 NA non-coding downstream 495635 8982965 ~ 8984242 (+)
LOC113536578 NA other upstream 210106 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 232768 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 235832 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 237208 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1209536 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 2323340 10810670 ~ 10850923 (+)
G179632 NA other downstream 2608823 11096153 ~ 11098811 (+)
G179643 NA other downstream 2673016 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2941283 11428613 ~ 11430897 (+)
G180121 NA other downstream 3567628 12054958 ~ 12055749 (+)

Expression


Co-expression Network