slc39a1 (LOC108270705)


Basic Information

Item Value
gene id slc39a1
gene name LOC108270705
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8472471 ~ 8477439 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930281.2
TGGGCGGAGCCAAAGAGAATCCAACATGGACTTGGTAGCAGCTGTAGAGAAACTGAATATGAGCTGTTAGACTGTTTTGAAGTGCTTTTGCGACAGATGTCGACTCGGGTCATATTTATGAAGATGTACCGGTGCCAGAAGACTGGCTAATGTTTGAGAAATAGTTTTTATAGATAGTTTGTTTTAAGGAGTTTAGTTCTAGCGTGTTTGTTTACATCTAGGTGGTACTGAGCTACTGTACATTTCGAGATGGAGTATTTATTAACGGTTAAAATATCAGCCCTGGTTGGCTTGTTAATTCTTACTGTGTTTTTTGGGTTCGTTCCTGTTCGGATGAAGTTTTTCCGAGAAACAAGTGGAACAGAAATCCACAGGACAGTACTGAGTTTAATCAGCTGCTTTGCCGGAGGAGTGTTTCTCGCTGCCTGTCTCTTGGACATTATTCCAGATTATCTGTCTGATATAAGTGCACAACTACAAGACACAGATATCGACTATCCTCTGGCCCAGTTCATCATGGCATGCGGCTTCTTCATCGTTCTCATCGTCGAGAGGCTGGTCCTCAGCTGTAATGAGCGAAGGAGTGAGGAAAGGGCTCCGCTTCTCCCGTCTGCAGGTCACAGCCACTCTCACTCACACCGCTCCGTGAACGACGTGGAGAGTAGCAGCCACCATGTCCACGTGGACCTGCAGGCGCATTCATCCTTCCGCTCGTTcattctcttcctgtctctctcgctGCACTCTGTGTTCGAGGGTTTGGCTATCGGCTTGCAAACGACTGACACAAAGGTGTTGGAGATCTGCATCGCCATCTTGGTCCACAAGAGCATCATCGTCTTCAGCCTCTCGATAAAGCTGATCCAGAGCGCTATCCGGCCCATGTGGCTCGTCATCTACATCCTTGTTTTTTCAATAATGTCTCCAATGGGCATCGCTATCGGCATCGGGGTGAGTGAAGCTCAGCTACAGATGGGGGCGTTAGTCCAGGCTGTGCTGGAAGGCCTGGCAGCGGGAACATTCGTTTACATCACATTTCTGGAGATCCTCCCTCATGAGCTCAACTCTCCAGAGCGACAGCTCCTCAAAGTGCTCTTCATCTTACTCGGCTTCTCTCTCATGGCCTTCCTGTGCTTCCTGGGCTAAGAACTGTAGGAGGGAGATCACAGGCGTATATACATATGGGACTTTAATGACTTCATTTTTAACTGACTAACAAATTTAAGATTTTACTATTTTCATTATTTGCGGcgcactaattttttt

Function

NR:

description
zinc transporter ZIP1 isoform X1

GO: NA

KEGG:

id description
K14709 SLC39A1_2_3, ZIP1_2_3; solute carrier family 39 (zinc transporter), member 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930281.2 True 1266 mRNA 0.47 4 8472471 8477439

Neighbor

gene id symbol gene type direction distance location
kif7 kif7,LOC107733953,LOC107749689 coding upstream 230346 8219886 ~ 8242125 (+)
mrps11 mrps11,LOC107594750 coding upstream 274780 8180998 ~ 8197691 (+)
LOC113536658 akap13 coding upstream 546732 7844673 ~ 7925739 (+)
si:ch211-106j24.1 LOC101154672,LOC108428483 coding upstream 677843 7781661 ~ 7794628 (+)
trnae-cuc_24 NA coding upstream 870174 7602226 ~ 7602297 (+)
rlbp1a rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717 coding downstream 3417 8480856 ~ 8487330 (+)
kbtbd13 kbtbd13 coding downstream 54796 8532235 ~ 8534139 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding downstream 87841 8565280 ~ 8571168 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding downstream 154384 8631823 ~ 8701565 (+)
snrpa1 snrpa1 coding downstream 233716 8711155 ~ 8717829 (+)
G178067 NA non-coding upstream 31254 8408009 ~ 8441217 (+)
G178104 NA non-coding upstream 49871 8420187 ~ 8422600 (+)
G178046 NA non-coding upstream 159819 8310660 ~ 8312652 (+)
G178047 NA non-coding upstream 162953 8307307 ~ 8309518 (+)
G178039 NA non-coding upstream 181756 8289523 ~ 8290715 (+)
LOC113536702 LOC108271401 non-coding downstream 36692 8514131 ~ 8522122 (+)
G178170 NA non-coding downstream 66830 8544269 ~ 8544475 (+)
G178192 NA non-coding downstream 111381 8588820 ~ 8589555 (+)
G178260 NA non-coding downstream 330166 8807605 ~ 8808944 (+)
G178383 NA non-coding downstream 505526 8982965 ~ 8984242 (+)
LOC113536578 NA other upstream 201721 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 224383 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 227447 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 228823 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1201151 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 2333231 10810670 ~ 10850923 (+)
G179632 NA other downstream 2618714 11096153 ~ 11098811 (+)
G179643 NA other downstream 2682907 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2951174 11428613 ~ 11430897 (+)
G180121 NA other downstream 3577519 12054958 ~ 12055749 (+)

Expression


Co-expression Network