si:ch211-146m13.3 (si:ch211-146m13.3,LOC108270934,LOC108412786,LOC107663021,LOC107686840,LOC107561441,LOC107730175,LOC107600348,LOC107712612)


Basic Information

Item Value
gene id si:ch211-146m13.3
gene name si:ch211-146m13.3,LOC108270934,LOC108412786,LOC107663021,LOC107686840,LOC107561441,LOC107730175,LOC107600348,LOC107712612
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5379911 ~ 5388579 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930282.2
TGGAACAGTCCAGTAATGAGCACATTCTGAGCATCATATGGCTTAAGACAATATAACATCCTTTTCTTTATATGTCTCTATAACTCCCCCACACAAAAAAGACGGGGGCGTTGGGGAGGGAGCAGGATCACTCGGACATTCTTATCTTTTTTTGAATCACAGTCTTCCAGGGAAGAAGCTTCACCTCTACATCACAGCaggagcacagagagagagagagagggagaaagagagagagagacagaagcagGAGCAACGGGAGAAATGCTGTGCCAGATAGGTCTTGATAGGGAAAGCAGAGCGCCGATGCGAGCCTCTGCCTGGCGGGGCCgtgtggagagagacagagaagtaCACCATCTGCATGCCCATGGGAAGAAGCAGGCGTAATAAAGGCATCCATTACCACAGGCCCGGCACAGACAGCGAGGAGCTTTAACATTGGGATAAGAGCCTGATTAGTTGGGTTGCATCCCTTTTCCCTTTTCCATTTTGCCTTGAAAGATCCTTTTGTCTCCCTGACGAGACTCGAGATACAGGGAGGAAAGCTGCTTTAGCATTTCTGTTTATCACGGTCTTCCTTGCTCGTTTCGTGCTTTCTCTAACATTCTGAGGATTTGCCAAAACCTGTTTCATGCATGTCCACTGGAGGCAGGTTTGACTTTGATGATGGGGGGTCGTACTGTGGAGGGTGGGAGCAGGGCAAGGCTCACGGCCGGGGGGTCTGCACAGGGCCCCAGGGCCAGGGGGAATACGCAGGGGCCTGGAGCCATGGATTTGAGGTTCTTGGAGTGTATACCTGGCCCAGTGGGAACAGTTATAAAGGAACCTGGGCGCAGGGGAAGAGGCATGGTATCGGTGTGGAGACCAAAGGCAAGTGGGAATACAAGGGGGAGTGGACGCAAGGATTCAAGGGCCGCTATGGGAGGCTGGAAAGCATCGGCAGTGGGGCTCGTTATGAAGGGACCTGGAGTAATGGCTTACAGGATGGTTATGGATCTGAGACATACTCTGATGGAGGTACCTACCAGGGACAGTGGTTGAGTGGTATGCGACATGGCTATGGGGTGCGTCAGAGTGTGCCTTATGGCATGGCCGCTGTCATCTTCTCCCCTCTGCGCACCTCCATAAACTCGCTTCGCTCTGAACACAGCGAGGGAGCTCCAACACCTGATGATGGCTCTGGTGTGAGTGGGGTGGCCGGCAGCCCGGTGGGACGTGGAGGCTTTGTGCTTTGTGCCCAAAGTGATGCTGACCGGCAACGGAAGAGGAAAGGGCGTTTCCGGCAGTCTATCCTGAGTGGCCTGAAATTACGCCGTTCTGAGTCCAAGAGCTCCCTGGCCAGCCAGCTAAGCAAACAAAGCTCCTTCTGCAGTGAGGCAGGCATGAGCACGGTCAGCTCAGCTGCATCAGACATCAACTCTAATGTCAGCCTTGGGGATGGGGAGACAGGAGCCAGTGTAGATGCAACAGTCACTGAGACATACATGGGGGAATGGAGGAATGACATGCGAACAGGTTGGGGGATCAGTCATCGCTCGGATGGACTGCGCTACGAGGGTGAGTGGTTTGGGAACAAGCGGCATGGTTATGGCTGCACCACCTTCCCTGATGGAACAAAAGAGGAAGGCAAATACAAGCAGAATGTTCTGGTGAGTGGCAAGAGGAAGAACATAATACCACTGCGCACCAGCAAAATTCGGGAGAAAGTGGACCGTGCCGTTGAAGCTGCTGAGAAGGCTGCAGAAATTGCTAAACAGAAGGCAGAGATTGCATTGTCAAGAACGAGCCATGCCCGAGGAAAAGCTGAGGCAGCTGAGGGAGTTGCACAGAGGGCCCTGGAGGAGTGTCGTCTGGCCCGGATTATTGCCAAAGAACTCTCCCCTTCCTTCCATCATTATGGAAATGGACTGGAATGCCAGAGACCAAAGCGTCAAGACAGAAAAGACAAAGAGGTGGAAGTGATCTCAACTGGGACGGACAGCCCAGAGCTCTGCACACCAGACACTACTCCTCCAGCCCAGACCCCAGACCTGAGTCCTGTCCTGAGCAACCCTCCATCACCTCCATGTACCCCACCATCTCACCGTGCCAGGAGCACCTGCTTCATGCGTCAGAGTGCTGTGGACGAACAGGGAGGGGCAGAGATTCAGGTTCTGGTTGAAGGAAGAGGCATGGACAATGGAAGAGGTGGAGCACACAGTTGGACTGCAGACATGTATCCCAACCGAAGGGGAAGCAAAGGAGACAGTAGCCGCTCTACCACACCATCCCTACTGGAGGAGGACATAGGCCACATCAATGGACATGAGCAAAACTCCTCAACACATCACTCATGGGAGAATGGCTCTTCCAATCACAAGCCCATTGAGCACATCTCCTCAGATAAGGGATGGGATCATATGCCATCCAATCAAAAGTCCTGGAAGCATACATCCTCGAATCACAAGTCCAGGGAATACACAATCTCCAAACACAGAGAATGGGAGCATGTTCCATCAAGTCACAACTCTATGGACCACAACTCTTCCAAGATCAAACCGCAAGTGCACACATACTCCAATCACAAGGCCTCGGGTCATAATTTGTCCAATCACAAAATTCATGAGCATTCTTCCTCCAATCACAAGCCAAAGGAGCATATCTCCACACATGCAAAACCACAAGACCGCGCATCCTCCCACTACAACCCTAGAGAGCATGTATCTTCCTATCGCAAATCACACGAGCATGTCCACTCCAATCACAAACCAAGCCAGACCTTTACCAATCATACAGCTGGTGAATCCAGTCTGAATGACTACCAGCCACCAGAACAAGGAGCCAAGAGCTCCAGTCTGGGATGGACTGTTGAGAACTCTTCCCAGTGGATCCCCTGCCACTCACAGCTGCCTGAGAAAGACAAGGAAAAGCTGGATGACTACCGGGTGGAAATGAGGTTCCAGCCCCTTGACTCCGTTTCGCAGCAGCACTTTGGCTCAGGCATGGAATGTCCAAGTCTCCAAGGGCACAATTCGCAGACACTACGTCAGCGGAATCATGAAGGAAAAGAGTGGAGTCTCGCAGCCAGGGAAGGATCCATGGACTCTGTGCAGATGCTGGACAGCCTGAATGTCGGGGTGGATTTGGAGGAATGGCCGTTGCACAGGGATGTCACCCTTTCTCCCCCTTTAACATCCTCTCCAATCACTCTAGAAAATGACAGAGAGCATCTGAACCTGGTCAAAACAAACTCAGGCTCCAGCTCTGTCCTGGTGGTCATGGTGATTTTACTCAACATTGGTGTagccattttattcattaatttctttatttaaacacaatggCCTAGAGAATGTTAATAACAGCACTTACTATTATGAAAAAGTAAGATATGCACATGCTGCACACTTAGCATCACTTCTCTATGTAAGGAACCCAGAATTTACATTAGTCAAGCCCATGTACACTGGAAAACACCATGTAAATTGTAAGTTTAGTTTGTGATTCCATTAATGATATATTTCCATTATTATCCATTAGGTATCtttgcttacttttttttccttctccataaTAAAGGCCCAGTAACAGTATTCTTTAGGAATAAAAGTATTGCACATATTTAGGATTTGAAGATACAATATTGCCTGATATAATTTGTCATGTCTTTCAGCTCGTTAAcagagttatttattttccttttgaGTGCACATCtggcctgatttttttttctgaacattatGATTGTATAGCTTAGTGAGATGGTCTTGTGGTCTTATGTACAAAGATGTTCTAGCGCATGTGAGGTGGTCAAGTGCACATGGCACTGATATGTAACTAGTCAGTCCAAGACTACACACCCCCTTGAATATCCCAGGGTACTGCCCTATAGGACCGCTGCAACCACTCATCAGTTCATCCATCGAAAATCTCGCATATCCATACCCACACTCTGTAAGTCAGACGTAAAGGCTATCTTAAAGGGCTTCATCATGACACGTTTTCATCCGAATCCAAATTCACAAGTGTGTAGTGAATGGGGTAATCCTGCGAcgttcttccttccttctctaaGACGAACCCCTTTAGCACCATCACTGAATGTCAGCACAATTCAGTCCATTGCTTCGTTTGTTTTACTTCACACCAGACGACTACATACACAACTATGCCAAACATGCATCGTACTTCCTGTATGACCTGAACCATAACAGAGGTACATCGATGGTTGAGTATTCTGGCTCATGCTTTGTAAAGTTTGAGACTGTTACCTTTTGACCACTGCTttcaatatacatatatataaatatatattctatattattgACGAGTTAGTATCTTTTAACTGTTTGCAAGATATCATTGATAATGCTGAGtgcctttttttaattgaagaaaaaaaaatcatcccaGCAAGCAGGCTTTGTACAAAGTGACGACATATACAGAAGTCGCGTAAGGAGGCATGGaaccatctgtctctctttctctctctactcaCCTTTGAACTGAATGGGTTGGCTGTAGAACACTGAGCCCGTGGAAATTTTTACAGCATGTTTGTTGGCCTGTATTCTTCTGCTGTTATTCTGTGTGactttctgcctgtctctctgtccagcAACTTTAGGTGACAATAGGGACTGAAAGCAGTGTAAAAAATGCCAGCTTGTTTCTCAGTGGGACCTGACTGAAATCATCTCaattaatgaatgataaaactgctactgtatattttatactaCTCATCCAGTGACATCATCATGTTGTGGAATCATTGCATGCCCAAGCATGCCCTTTCTTACGCAATGATTTATGAGATGTTTCCAAGTTATGtggaaaaattaataaaatgtttgagGTTATGA

Function

GO: NA

KEGG:

id description
K19530 JPH; junctophilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930282.2 True 4850 mRNA 0.48 6 5379911 5388579

Neighbor

gene id symbol gene type direction distance location
LOC113536448 psmd13,LOC108270933,LOC108412783 coding upstream 2020 5366861 ~ 5377891 (+)
drd4b drd4b,LOC108270559,LOC108412785 coding upstream 24621 5314467 ~ 5355290 (+)
rxfp3.3a2 LOC108270660 coding upstream 69752 5308021 ~ 5310159 (+)
senp8 senp8,LOC107686835,LOC107594499,LOC107738916,LOC107730148 coding upstream 344506 5033239 ~ 5035405 (+)
rps17 rps17,LOC108271026,LOC100699764 coding upstream 643507 4730499 ~ 4736404 (+)
LOC113536403 LOC108270935,LOC108412779,LOC103045764,LOC100149007,LOC107686837,LOC107600349,LOC107712618,LOC107730114 coding downstream 5438 5394017 ~ 5398901 (+)
csnk2a2a csnk2a2a,LOC108412781,LOC108270938,LOC107730160,LOC107663022,LOC107712622 coding downstream 10545 5399124 ~ 5407447 (+)
sult5a1 st2b1 coding downstream 100436 5489015 ~ 5496453 (+)
LOC113536777 LOC108270592,LOC103040452,LOC108435886 coding downstream 133669 5522248 ~ 5524430 (+)
LOC117598428 LOC108270908 coding downstream 160852 5549431 ~ 5562727 (+)
G176056 myo9a non-coding upstream 419385 4912078 ~ 4960526 (+)
G176041 NA non-coding upstream 486554 4893142 ~ 4893357 (+)
G175999 NA non-coding upstream 518968 4787742 ~ 4860943 (+)
G176008 NA non-coding upstream 541540 4813512 ~ 4838371 (+)
G175991 NA non-coding upstream 640245 4737251 ~ 4739666 (+)
G176384 NA non-coding downstream 32308 5420887 ~ 5424095 (+)
G176401 NA non-coding downstream 83233 5471812 ~ 5568100 (+)
G176406 LOC108270509 non-coding downstream 117191 5505770 ~ 5509854 (+)
G176430 NA non-coding downstream 214077 5602656 ~ 5614328 (+)
G176469 NA non-coding downstream 288627 5677206 ~ 5690860 (+)
G175977 pacsin3 other upstream 718775 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 734713 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 1080544 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 1721621 3647355 ~ 3658290 (+)
pth1b NA other upstream 1732796 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 1733806 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 1879252 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 2854776 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 2856373 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 2859437 8248016 ~ 8248088 (+)

Expression


Co-expression Network