aldh1a3 (aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254)


Basic Information

Item Value
gene id aldh1a3
gene name aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8926812 ~ 8950809 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930283.2
TTTatcacacacctatacacacacacacacacacagagacacacacacacacacacacacacacacacacactgctctgtcaTGGCGCAGAACGGGATTACAGAGAACGGAGAGGCGCAGAATGTGAGTTTACCACAACCTCAGAAGATCTCAGACATCAAACACACCAAGCTTTTTATCAATAACGAGTGGCACTGCTCTGTGAAAGGAAAGACCTTTCCTACATTCAACCCTGCAACAGGTGTGAAACTCTGCGACGTGCAAGAGGCTGATAAAGCTGACGTGGACAAAGCAGTGGAGGCAGCGAGAGCGGCGTTAAAGCAAGGCTCAGCATGGAGGAGGATGGACGCGTCAAGCCGGGGCCGCTTACTGAATGTGCTGGCTGACCTGCTGGAGAGGGAGCGCAGTCTGCTCGCTACCATGGAGACTATGGACACTGGGAAACCCTTTCTGCAGTCATTCTTTGTTGATCTGGAAGGAAGCATCAAAACACTGAGATACTACGCCGGCTGGGCTGATAAGATCCATGGCAAGACCATGCCAGTGGATGACAATTTCTTGTGCTTCACCAAACATGAGCCGATTGGCGTGTGTGGAGCAATCATTCCATGGAATTTTCCTCTACTAATGTTCATGTGGAAGATTGCTCCAGCCTTGTGCTGTGGAAACACAGTGGTCATCAAGCCGGCTGAGGAGACTCCACTGACGGCCCTCCATGTCGGCGCGCTCATCAAGGAGGCCGGCTTTCCTCCTGGAGTGGTGAACATTGTGCCAGGTTTTGGCCCAACAGCAGGGGCAGCCATTGCCAGCCACATGGGCATCGACAAAGTGGCCTTCACCGGCTCCACAGAGGTGGGTCAGCTGATCAAAGAGGCGGCGGCGAAGAGCAACCTGAAAAGAGTGACGCTGGAACTGGGAGGAAAGAACCCATGCATTGTGTTTGCTGACTCAGACCtgcaGTTAGCGGTGCAGGAAGCTCAGAAGGGTGCATTCTACAACCAGGGACAATGCTGCACCGCTGCCTCACGTGTGTttgttgaggagtgtgtgtatgatgagtTTGTGAGACTCAGCATTGAAAGTGCTAAGAGAATCGTAACCGGTGACCCCATGGACCCCGAGACGACACACGGCCCGCAGATTAGCCAGCAGCAGTTTGATAATATCATGGAGCTGGTGGAGAGTGGGAAGAGTGAGGGAGCAAAGCTGGAGTGTGGAGGAAACGTAGTGAAGGATAAAGCGCTGTTCATCCAGCCCACCATCTTCTCAGACGTCAAAGACCACATGCgcctggcaaaggaggagATCTTTGGGCCAGTTCAGTGCATTTTGAAGTTTAAGAGTCAGGAAGAAGTGATTGACAGGGCGAACAGCACCCACTACGGCCTGGCGGCGGCTGTGTTCACCCGGAGCGTAGATCGAGCACTGAGTGTGTCCTCGGCACTGGAGGCTGGCACTGTATGGGTGAACTGCTATAATGCCCTTCATGCCCAATCACCTTTTGGCGGCTACAAGATGTCAGGGAACGGGCGAGAGCTTGGTGAGTACGCATTGGCGGAGTACACCGAGGTCAAAGCCGTCACCATAAAACTCAGCGAGCAGCTGAAGATTTGAGACACCGCTGTTTTGGAGCTGACCCTGGTGACCTCTCATCCACCGTCCATCTATAAAGCGCTTCAGAAACGTGGTACCTAGGAATCAAACGGCCTACACAATGGACGTTATGTTTTCCCCACTGAAATGACTTCTTATATATCTACAAGCTCTTTATCTTCCAGTCTTTTTTATTCTATATAGATgttatgtacagaaaaaaaatgtttgtataatgtttttatttaatctggATATCTTTGTAAATTGCCAAAAGACTTGATTTGAAGACTACAAatgtttgcttttgcttttacaTGGTCAGTGAATTCCTCCTCCTGCCTCGGTTTATGTGTTAGACtggcttaaaaataaaatttacacaatGTTCCACTTACTCCAAATATAGCAATTTAGCCAACACATGCATGGTGGATGAAGTTTGCCTCCTGGGTTTTGCCTAGGAGCTGCAAGGCTAATAAAGCTAAAAGGTAAGGAAAgtttatagctaccagtttcgcatttatttatttgtttatttagactCACTGTCATAAGTTGTCAATCCTCTATTCATTTTTCAACTATTAAGTGAAGCTAGCTAATAATGTTACAGTAATCTAAAAATAGGAAAATCATTCTCGAGGCTTATTAAATGGACCAGCATTTAGAATTAAGTAAATAAGAGAaaggacagatttattttttgcttgtttctgAATGTATATGCAGATATTATGGGAGTTGAGTTtgaaacattaaatacatatgcatcacatttattttgtctctTAAAATGGCTTATACCTATTTAAAAGCTATTAATAATGTTTAA

Function

symbol description
aldh1a3 Predicted to enable aldehyde dehydrogenase (NAD+) activity. Is expressed in several structures, including brain; immature eye; otic vesicle; pleuroperitoneal region; and sensory system. Human ortholog(s) of this gene implicated in isolated microphthalmia 8. Orthologous to human ALDH1A3 (aldehyde dehydrogenase 1 family member A3).

NR:

description
PREDICTED: aldehyde dehydrogenase family 1 member A3

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K07249 ALDH1A; retinal dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930283.2 True 2428 mRNA 0.46 14 8926812 8950809

Neighbor

gene id symbol gene type direction distance location
lrrk1 lrrk1,LOC106593346,LOC106562602 coding downstream 2427 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding downstream 36114 8890627 ~ 8890698 (-)
plekho2 plekho2 coding downstream 314506 8596180 ~ 8612306 (-)
ankdd1a ankdd1a coding downstream 337460 8572475 ~ 8589352 (-)
clpxa clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding downstream 361904 8550368 ~ 8564908 (-)
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding upstream 807843 9758652 ~ 9768100 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding upstream 877139 9827948 ~ 9835960 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding upstream 887190 9837999 ~ 9864785 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding upstream 1117708 10068517 ~ 10073310 (-)
efl1 efl1,eftud1 coding upstream 1163274 10114083 ~ 10251340 (-)
G178398 NA non-coding downstream 214694 8711177 ~ 8712118 (-)
G178227 NA non-coding downstream 333407 8593186 ~ 8593405 (-)
G178208 NA non-coding downstream 404727 8521801 ~ 8522085 (-)
G178057 NA non-coding downstream 602648 8323619 ~ 8324164 (-)
LOC113536653 NA non-coding downstream 651452 8271107 ~ 8275360 (-)
G178501 NA non-coding upstream 52835 9003644 ~ 9003852 (-)
G178673 NA non-coding upstream 236262 9187071 ~ 9189914 (-)
G178679 NA non-coding upstream 246791 9197600 ~ 9197805 (-)
G178867 NA non-coding upstream 359415 9310224 ~ 9311903 (-)
G178868 NA non-coding upstream 362045 9312854 ~ 9313650 (-)
trnar-acg_8 NA other downstream 679050 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 680037 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 682091 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 1162382 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 1337997 7580434 ~ 7588815 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 32373 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 370157 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 436682 9387491 ~ 9407218 (-)
G178942 NA other upstream 571607 9522416 ~ 9523330 (-)
G179035 NA other upstream 863083 9813892 ~ 9815225 (-)

Expression


Co-expression Network