alpi.2 (LOC108270538,LOC108410619)


Basic Information

Item Value
gene id alpi.2
gene name LOC108270538,LOC108410619
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11384806 ~ 11392946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930287.2
gttccttcatcCTCTAATCCACACCATGGCTCTCCGACACACGCTTACATCTggaatattaattttatttttgattaatgtctgtttttctgACATCCCAGtggaagAAGAGGATCCAAGGTTTTGGAACATAAAGGGGAAGGAAGCTCTCATCTCAGCTTTATCTCTGAAACCAAATGTTCATCGGGCCAAAAATCTCATCCTCTTCCTCGGAGACGgtatgggAGTTTCGACAGTGACGGCTGCTCGGATTCTGAAAGGGCAGCTCAATGGTAAAAATGGAGAGGAGACTCTGTTAACCATGGACATGTTCCCTCACCTGGCTTTATCCAAGACCTATAATGTGGATCAGCAGATGCCGGACAGTGCTGGTACGGCCACAGCGTATCTGTGTGGTGTGAAAGCAAATTACGGAACTCTGGGTCTCAGTGCTGCGGCTCGGCTAGGTCAGTGTAGCACCGCCAAGGGCAACGAGGTCAAATCAGTCCTCCACCGTGCCAGAGCGGCAGGGAAGTCTGTGGGTGTCGTGACCACCACGCGAGTTCAGCATGCATCTCCAGGGGCAAATTACGCCCATATTCCTGATAGAGACTGGTACAGTGATGCTGAGCTGCCTGCTAGTGCAGTGAGCGAAGGCTGCAAAGACATCTCCTACCAACTCGTCCACAACACCGACATTAATGTGATATTAGGTGGAGGGAGACAGTACATGCTGCCTATAGGGACTGCAGATCCTGAATATCCTTCAACCACCGGTGTCAGAAAGGACAAAACCAACCTGATCGACGAGTGGCTTAAAAACAAAACGaaCGCCTTTTATGTGTGGAATAAAGCTCAGCTCAACGCTGTGGATgagaaaaacacagattatTTAATAGGTCTTTTTGAGCCAAAGGACACCAGGTATGAGCTGGATAGGAATCCAGAAACAGATCCGTCACTCACAGAGATGATGGAAAAAGCCATCAAGATCCTCAGCAAGAACCCCAATGGATTTTACCTCTTTGTGGAAGGTGGTAGAATAGATCATGGACACCATGCAAGTGAAGCTAAACATGCGCTGTATGAAGCGGTGGAGTTTGACCGCGCCATCGCTCGAGCAGCCGAGCTGACCAGTGAACTGGACACTATGACTGTGGTCACCGCTGATCATTCACACGTGTTCTCTTTTGGTGGAAACTCACCCAGGGGCAATCCAGTACTGGGACTTTCTACTAAAATTGGCACTGATAAGAAACCCTTCACCACCACTCTGTATGGGAACGGACCAGGATATATCGCCAATGGAACACGGCCAGATCTTAACTACACTATTACAAgCAGAACCAATTATGTCCAGCAGTCTGCAGTTCCTCTCTCATCTGAAACTCACGGTTCTGAAGACGTGGCCATTTTTGCAAAAGGCCCGATGTCTCATCTTTTCCACGGTGTCCAGGAACAGAGCTACATCGCCCATGCTATGGCCTACGCAGCCTGCATCGAGCCCTACACCGACTGTCACTTACAGCTGGATTCCGAAACAGACCCAAATCATGCCGTTTCCATCCGGCTCAGTGTCTGCGCTATACTACTCAGTCTCTTCACTTCTCTCATCCATTTCCTCTAAAGGAGCTGCACTTTCACCCTGAACACTTATTTCCCCTACAGATTGTGCAACATGCAGTAATATTGTGGATTTTTGTGTTAAACCAGTGTCCTGTGCacatgatataaatataataatgttaataatgtaataaatgtagatGTAATTAGTGCAATGTTATTAACTATCAATAACAGACCCTTTACAGATTAAGTATAACAGAGATATCAGTGgtatctttattattatcacattttactgtattttatagaAAGTCTATTAAGTCTTTATAGAAAGATAGTCTGGCACAGCCATAATTTTCTGAGATGGATGTAAACAGCTCCCAGACCATGTACACCATCCATAATTTCATCTATGgttattaattatttcagttATATTTTGAGATGTCAGTATTCTGCGCAGTAATTACCCATTTCCTgcataaagtatttaaaaacatatctaGGTTctctagatttatttattacttaaatCTGCATGTAATGTGAATGACTTTTCTAAACATCACTTATGTTAAACAGTAAATGGATGGTCATGTGTAATAAATACCATGAGTAACAAAAGGATAAAACATTATACATGAAATTAATATGGCACTATTTATGATGTACAAAATGCACTGTTTAGAACTGTCACATGACTCTCACTTCTGGGGTtatcatcaataaaaaaaaaagtttaaaaatcaaA

Function

NR:

description
intestinal-type alkaline phosphatase-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K01077 E3.1.3.1, phoA, phoB; alkaline phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930287.2 True 2299 mRNA 0.43 11 11384806 11392946

Neighbor

gene id symbol gene type direction distance location
alpi.1 LOC108270517,LOC108410621,LOC105900923,LOC107698042,LOC107550664 coding upstream 4811 11360964 ~ 11379995 (+)
b3gnt7 b3gnt7 coding upstream 202952 11176097 ~ 11181854 (+)
LOC113536667 armc9 coding upstream 224580 11113644 ~ 11160226 (+)
LOC113536756 LOC108271257 coding upstream 710754 10650258 ~ 10674052 (+)
tctex1d2 tctex1d2 coding upstream 761642 10617812 ~ 10623164 (+)
ppp1r2 ppp1r2 coding downstream 2261 11395207 ~ 11402964 (+)
ncl ncl coding downstream 16122 11409068 ~ 11419817 (+)
LOC113536790 NA coding downstream 19114 11412060 ~ 11412127 (+)
LOC117598448 NA coding downstream 19628 11412574 ~ 11412640 (+)
LOC113536800 NA coding downstream 25168 11418114 ~ 11418243 (+)
G179696 NA non-coding upstream 189119 11194836 ~ 11195687 (+)
G179685 NA non-coding upstream 221427 11163021 ~ 11163379 (+)
G179648 NA non-coding upstream 230043 11152149 ~ 11154763 (+)
G179647 NA non-coding upstream 231850 11152018 ~ 11152956 (+)
G179628 NA non-coding upstream 314989 11069589 ~ 11069817 (+)
G179754 NA non-coding downstream 7978 11400924 ~ 11401434 (+)
G179753 NA non-coding downstream 11413 11404359 ~ 11407414 (+)
G179773 NA non-coding downstream 78400 11471346 ~ 11473207 (+)
G179775 NA non-coding downstream 80622 11473568 ~ 11475147 (+)
G179779 NA non-coding downstream 85402 11478348 ~ 11530003 (+)
G179643 NA other upstream 223209 11160346 ~ 11161597 (+)
G179632 NA other upstream 285995 11096153 ~ 11098811 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other upstream 533883 10810670 ~ 10850923 (+)
LOC113536578 NA other upstream 3114056 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 3136718 8248016 ~ 8248088 (+)
G179758 psmd1 other downstream 35667 11428613 ~ 11430897 (+)
G180121 NA other downstream 662012 12054958 ~ 12055749 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other downstream 935106 12328052 ~ 12333681 (+)
cdc14ab cdc14a other downstream 1119942 12512888 ~ 12561781 (+)
LOC117598398 NA other downstream 1180211 12573157 ~ 12602064 (+)

Expression


Co-expression Network