pkd1l2a (pkd1l2,LOC108413304)


Basic Information

Item Value
gene id pkd1l2a
gene name pkd1l2,LOC108413304
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4019927 ~ 4039717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930288.2
TTCAGCAGTTTCTCCAGAGACATTTGCAATCGGAGCAGGATTGGTGGCTGGGACTGGCGCCTGCCTCCTTCAACCTCAGCATGGGCTCCGCTGCCACAGAGGGTTCCTTGTCCTGGCTGGATGGATCTGACGTGAGTTACTCTAACTGGCTCCGTGAACCTGAGCTCGGAGAAGCTTGTGGTTACATCGTGAAGAAATCTGGATTTCAGTGGGCATCAACCAAAAACTGTAGCCAAGAGCTCCACTTTATCTGCGAGTTTGAGTCAGGACATGCTCTAGCCTGTTTGGAACACAATGCCACGCTACAGTGTGGCTCTGGTCAGGTTATAGAGATCGATGACAGCTTCTATGGCAGGAAGACTCTGCACTACTGCAGGGCCGGACATTCTCTGCCTCACACGTCCTTACAGGAGGAGTGCAGCTGGGTCGACGTGGTGGATATAGTGTCAGGGCACTGCCATGGGCTGCAGGTATGCCAGGCTGTAGCTGAGGTAGCATCCTTTGGAGAACCTTGCCCAGGACTAGGAAGTTATTTATCAGTGGATTATCACTGCAAAGAGGGTCTTCACCTGCTGATTAACAAGCAAGCTGCTGTCTTTGATAATGTCACCTTGACTATAAAGTGGTTGCTCCACCCTTTCCAAGGAAATCTCACATGCACTTTGAATGCTGGTGATGGGCACGCCATCGACCCCTACATGCCTGAAGAGTTACAGAGTAATATAGTGCACAGGTACCAACACGCTGGAGTCTACACTGTTACAGTGGAGTGTAGCACCAGCGAGTGGCACGTGACAGCGCAGAAAACCATCACCATCCAAGAACCTGTTGGGGAATTTAGCAAAGTTGTGTGCCACAGCTCAAACCAGACAATGGACAGTGAAAACTGCAAAGGTCTTCAACACCATGCTCTGAGAATCCAAGTGCAGCTCAGTGCCGGTACTAACATCACATACAAAATCCAGCATGGACTCACTGAGCTTGCCCACTCTTCTGAAGTCAGAGGGATCATTCCTCACAACATCACTATCCCTCGAGAAGCTTTACAGCTTTTGGGCTTGGGATGCCATCAACTTACTCTCCTGGCCTCCAATGGAGTGACAGCTCCAGAAGTGTCTGCTAGTCTGGAACTTTGCTTGGTGGAGCCAGTGGAGGGTCTTCAAGCCTCTGTGGCACCAGAACAGGACCTTTGCTCAGACTCAGCTCTATATGTTAATGTCTCTCTGGACCACGGTGCTCCAGTGGACGTGCTCTTTCTGGTGTCTGGGGATAACGACAGCTTCTCTGAGACTCATCAGATGCTAAATGGGAGTTTACAGATGTTTAGGATCTCCAGCAAAATAGAAGGTCCAATGAGGGTAAAGGTGAGGACATGGAACTTGTTTTCATCAGTGGAAGCAGATGCTGGAGACACACTACTGCATTGCCAGACAGAAGATCATATGGGAGATCTAACTGGCGATAACCTGACGATCACTGCAAACCCAGAGAGCCCAGTCATAGGCACGCGTAGCATAATGTTGGGCGTTAATGGTCTAAATAGAAATGCTAACCTTTACACATTTGCCTGGAACTGCAgtGGAACTTGTCCCTGTAATGTCAGTACTCAGACTAAAGGCCATGAGATACGTGCTGCCTGTCTCCCTCCACCCTACAGTTTTTCAGTCTACTCTGTGACTGTCACAAAGACAACGGGGCAGCCAGAGGAACAGACAGCAAGCAAATGCATCTCTGTGTCTCCAGGGAATGATTTAAATCCAGTCATTACATGTTCCAACTGCAACCCAGTGAATGTCAGTGCAAATGTTACATTGCAGTTACAGTGTGAAGGCTGTCAGCAAATTGTTTGGTACTTTGAGGACACAAACCCTGTACCTGATGATTTGAGTTCCTGCTATTCTGAAAAAGGACAGAAGGCACTGATGAAACAGAAGGAAGGTGTCAGCTCTTTCGTAATCGAGACTGCAACTCTAGTCAATGCACAGCAGAATATAAATGTTGTTGCTTATGGTGTAAAAGATGGTTTATCTGGATCGACTGAATTCACCATCCCAATATTGGGTGCCTTGTCTACTTTGTTCCCAACATTACTACCTGATAGTCAAACCACAAATGGGCTGCCTGCATCCCAACCCCAAACCCAGGCTTCATCCACAGAGTCTATAATAACCACCTCCAATATTCCCTTTAGTTCTCCCAACACTACTACTAATACCCTACGAGAAGTTTCCCCTCCGCCGTTCTGTAACATTAACCCCACTGTTGGGGACATTCTCTCTCCCTTCAACATCACATGCACTGTGGCTCCTTTGTTCTGCAAAGCTGGACCCTGCACGTACTGCTTCAGAACATCCACTGGTGACTACTTATACTGTGGCCATAACCAGACGGTGGAGTCACTCTTTCTCCCTGTGGGGAGTGATGCTACTAACTACAGCCTGGTTGTGGCAATCACTGTTGAGAATGTGGAAGGACAGAAGATTAACACGACCTTATCTGTCCAGGTAAATGATGCTAGCATTGGGCCCACAGTGGAGGATCTGCAGAGCTTTGTGTCCAAGCAGGTGGACCAGCTGTTGCAGCTTGGGAAGGTGACAGGGGCAACACTAGCCCAGATGTTCCAGTCTGTGTCTAACAGGTTGAATGGGGACACAACCGAGGGCCAAGAACAAGATGCAAAGATGAAGCTAAGAGAGCAGATGCTGTTAGACCTGGGCACAGCCGTGAACGCCGCCCCCCTCAGGAACCCTTCAGAAGTGCAAAAGACAGCTGACGCTGTAGTGGGCCTCACTACACAGAGTGAAGAGCTGACATCTACGGCTCAGCTAGAGGCCAGCTCACTTTTGTCAAACCTCAGTCTGTCCCtggtctctctcacactctctgagGGGGATGACAAAGAAGTAACAAGGCAGGCGGTCACACCCATCATTCAGGCTGCCAGCAACATCCTCAAAGTTTCTGCCAGCACAGACCAGCAGgaaatcaTCTCAGAAAACTTGCTAAATGCAGCAGACAATGTACAAAGTGCTCTGCTGGCTGGTGCAAGCATAGACCAAGAACCCATCATGGTTAGCACCTCCGAGATCAGTGTGTATGTAAACAGacTGTCACCAGTGGTACTTCAGAAACAGTCCTTCAGTATTGAGTACAACAGCTCAGCCAGCTTTGTGCTCCCGTCTCTGGGTCCTAATGTGCTGCCTTTAGAAGAGCCAGTGGATGTGCGGATGCTGAGTTTTGCGATAAACCCTTTCCCCTGGAGGGAAAGCGAGCCCATAAATGGAGCGGTGGCGTCTCTGTCCATCACCCGAGAGAATGGATCTGTTATCCCTGTATCAAACCTCAGTGAGGAGATTGAGatAATCTTACCAAGACCAGAGGCTGAAGTTAACAGTACATTTCTGGACCTGGGGAACTACAGTACCTTAGTCATTAATGTGACCATGCCAAACATATCTCTGGTTTTGAAATTGGACCCCTCAGAAGAGATATCTTTACAATTACTCCTGGGTTTTGAGCACTATCCAAACAACACTCACTACAAGACCACAATTCAGCTCCCTCAACCAGGAAATTCAACAGAAGAGAGGTATGCATGGGTGCTGGACCCCAGGGATGTAGCACTAGACGTAGGGGTTTACTATCTTCTGGTGAGGCCTATTGTCCAAGCAGGTGTAAACTCCTCCAACGTCTCAGTGTTCATCACATCAATAGCTGCTCAGTGTAAGTACTGGGATGAGACTGAAACCAACTGGAGTGACTACGGCTGCAGGGTTGGACCTCGTACCACACCACTGCTTACTCAGTGCCTGTGTAACCATTTGACATTTTTTGGCAGTACCTTCTTTGTCATGCCCAACCTGGTCGACGTGTCCCGTACTGCTGAACTTTTTGCCACGTTCGCCAATAACCCTGTAGTGGTGTGTTTCATTGGTGCTATTTTCCTCGTCTACCTCATGGTTGTGGTTTGGGCACGAAGAAAGGACATCCAAGACACAGCAAAGGTGAAAGTCACAGTGCTAGAGGACAATGATCCCTTGGCTGAATATCGCTACTTACTGACCATCAGCACTGGGCATCGCCGGGGAGCTTCTACATCCTCTCAGGTTACAGCGACTCTACTGGGCTCTGAGGGAGAGAGCGAGCCCCATCATCTAACTGACCCAGACAAGCCGGTATTTGAGAGGGGAGGAATTGACATGTTCCTCCTCACCACGCCTTTCTCACTTGGAGAGCTGCAGAGCATCAGATTATGGCATGATAATTCTGGGAAACATCCTGCTTGGTATGTTAATAAGGCGACGGTCCAAGACCTGGAGACAGGGCAAAAGTGGCATTTCTTATGTAGTTCATGGCTGGCCATTGATGTAGGAGAGTGTACCCTGGACAAAGTGTTCCCTGCAGCAACTGAGATGGACTTAAAAAGGTTTAGTAATCTGTTCTTTATGAAAACCACAAAGGATTTCCAAGATGGTCACATTTGGTTTTCGGTGATCAATCGGCCACCCAGTAGTAACTTCACTCGAGTGCAGCGTGTTTCatgctgtttctctctgttgcTCTGCACCATGCTGACCAGCATCATGTTCTGGGGGATTCCCACTGACCCCTCTGAGCAGACCATGGATCTGGGTAAGATCGAGTTTACCTGGCAGCAAGTGATGATTGGAATCCAGAGCTCCATTATTATGTTCCCCATCAACCTTCTTATTGTGAGCATCTTCAGAAACGTCCGACCAAGGGAACGAAGAACAGATCAAATTCCTAAACAGTCTAAGACTGATTCTGTTAAGCAAGGAAAAACAGGACAGGTTTCGCCAACCCAACCTCCTTCTCCACAGAGTGTCCATAGGGAGATCACCCCAGATGTTGTAGTCAAGGACATCAAAAGGATAGCCCAATCACTCTCCAAGGCTCTGAGGAGCCCCATGCCAAGGATAGACCCTGAGAAAATGGATATCAATGCTCTCCTGTCACTAGTTGAAGATATTATTTGTCAGCAGAACAGTGCAGGAGGCAAGTTTTACTCTGATGCCTCCAAAAAGGAGCTTGCCATCTCTCTGGGGGCTGTAAATCTTCATGAGAGAAGTCCTGAACAGATGCCAAAAGAGAAACACAGTATCTACAGGCAGTATCTCTATAAACAACTCCAGAATGTGGAGAAAGAGCTGAAGCTGCTGGGTCCTACCCGGTTCTCTAAACCAGAGAGCTACATTCAGGCAGTCCTGCAGGTTCAGGGCATGAAACGATTGCTAGAGCCATATCTCTCCTCCAGCTCCAGCAGGGACCAGGTTTCCTGCAGCTCCAGTCTTGGAGAGGACCACAGAGGTGATAAGAAGTGCTGTCAGAAAGGCTTGCCCTGGTGGTTTGTGTTTGTTGGCTGGATTCTTGTTGCAGCCACTAGTGGAGTGTCAGCATATTTCACCATGATGTATGGGCTGACTTATGGAATGGATCGCTCTGTTAGCTGGCTCATTTCTATGGTTGTGTCTTTTTTCGAAAGCCTCTTCATTACCCAGCCTATGAAGGTGCTTGGATTTGCTGTCTTCTTTGCTCTGGTTCTAAAGACAGTTGATCAAGAAGAATATGGAGATCTTCCAATTGAGGGTGGTCTATCAAGCGCAGATGATCCTGATGGCATACGCATTGCCAGGAGGGACAGCACGTGCAGTTTCTATCAGCCTCCTCCTCCCACCGATATTGAGAAGATGAGGAACAACATGATCAAAGAACAGAAAGTCTTTGCACTCATCAGGGAGATTCTCATTTACGTGGGCTTCCTCTGGATGCTACTCCTGGTGGCTTACGGTCAGCGAGATCCAAATGCTTACTACCTCACTCAGCACATTCAGCAGAGCTTCAGGAATGGCATCGCTGACAGTATGAACTACAAAGATGTGTTTACCTGGGCAAACACCACCCTCTTAAATAGCGTTTTTGGACGACAACCAGGCTTTATCACAGATGGAAACTCGAAGCTCGTAGGCAATGCTCGACTCCGGCAGGTTCGAGTGCACAAGGACTCCTGCAGGACCTCCAGCTTCATGAGCCGCTCCATTCATGACTGCCATGCTCCATACTCTTGGGAGGTGGAGGACATGGGCTCCTATGGTCCAGGCTGGAACCGATCAACAGATGTAAATTTGTCTAAGAGTTTCCTCATGCCATGGCGGTACCAAACCCAATCCAGACTCAGGGCGCACCCTATCTGGGGTGGGGTGGCTTTCTACAGAGGTGGGGGATTTGTTGTGGACCTGGGGCCtaacaaacaaaatgcaagCAGTTTGCTTCAGTACCTTTTTGACAACATCTGGGTGGACAAATACACTCGGGCTATCTTTGTGGAGTTCACAGTGTACAATGCTAATGTCAACCTCTTCTGTATTGTCACGCTGATGTTCGAGACCACAGCAGTGGGAGCTTTCCAGTATCGCAGTGATCTACAAAGTGTCCGCCTTTATCAGTCAACTGGtggttttcatattttcatgatGGCCTCTGAGGCCATCTATTTTCTCTTCATTCTTTATTACATGTTTCAGCAGggcAAGCTTATGAAACAACACAAGTGGGAATACTTCAGGAGCAAGTGGAATCTTTTGGAGCTAGCCATCATTATTTTAAGCTGgagtgcactgtgtgttttcatCAAGAGGAAACTGTTGGGCAACCGGGACATTGAGTATTATCAAACCCACAAAGACCAACATGCTAGCTTTCATGAAACTGCTGCAGCAGATGGAGTTCTTGGATATCTTATAGCTTTCCTGGTTCTGCTGGCCACGGTCAAACTGTGGCACCTGCTGCGCCTCAACCCTAAACTCCAAATGATCACCGCGACATTGCGTCGGGCGTGGAACGACATCTCTGGCTTCATCATCGTCATGACAATTATGTTCTTGGCTTACTCCATTGCTtgtaatttaatgtaCGGTTGGAAGCTTTATTCATACCACACTCTTCTACATGCTGCCAAGACCATCGTAAGCTTACAACTGGGGATCTTCAACTATGAAGAAgtttTGCATTACAATCCTGTTCTCGGTGCATTTGTCATTGGTTCTTGCATCATCTTCATGACGTTTGTGGTTCTGAACCTATTTATATCCGTTATCCTGGTGgcattttctgaagaacagttaCACCATAAGCCGTCTGAAGAGGAGGAAATCGTAGATCTGATGCTGATGAAGATATGCAGCCTTTTGGGAATCAAGGTTAAGAAGAACCAGATGCCTGACGAACCAAAAGCAACACCTTTTGCCATATCATAAATGTAGAATTGAGATAGAAAGATAAAAGTAGTACATGAAATGGATAAAAGCAGCTTTTATGTAatgctctttttgtttttggaaaTTGTAGCGCTATTAATATCTCTGTGCACAATgctgtaattatatttaaaagctTGATGTGAAAGGTGTTGCATGTACTGAGTGTAGGCCTTTATTATATAAGCTGTAAAACATAGCCCTTTGGGTCTCTGTACAAAGCTTTTAATGGCTTCATTTC

Function

symbol description
pkd1l2 Predicted to enable calcium channel activity. Predicted to be involved in detection of mechanical stimulus. Predicted to be integral component of membrane. Predicted to be active in membrane.

NR:

description
polycystic kidney disease protein 1-like 2 isoform X2

GO: NA

KEGG:

id description
K04988 PKD1L2; polycystin 1L2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930288.2 True 7515 mRNA 0.47 41 4019927 4039717

Neighbor

gene id symbol gene type direction distance location
dkk3a LOC108270596 coding upstream 96958 3912784 ~ 3922969 (+)
LOC113536513 LOC108271259,LOC108411663,LOC107558370,LOC107552396,LOC107597482,LOC107657963,LOC107713003,LOC107746258 coding upstream 447664 3565114 ~ 3572263 (+)
LOC113536476 LOC108271228 coding upstream 667148 3283110 ~ 3352779 (+)
znf143a LOC108271103 coding upstream 756629 3254156 ~ 3263298 (+)
psmd7 psmd7,LOC107584693,LOC107659147,LOC107553010 coding upstream 785987 3226648 ~ 3233940 (+)
tmem41b tmem41b,LOC107730092,LOC107727087,LOC107686813,LOC107694458,LOC106562360 coding downstream 26862 4066579 ~ 4077728 (+)
dennd5a dennd5a,LOC107694459,LOC107727099,LOC107730084 coding downstream 40141 4079858 ~ 4128554 (+)
sinhcafl LOC108271422,LOC107562797,LOC108413309,LOC107727116,LOC107686816,LOC101074870,LOC103370878 coding downstream 91885 4131602 ~ 4137388 (+)
LOC113536728 NA coding downstream 102920 4142637 ~ 4145671 (+)
mmp15b mmp15,LOC108271068,LOC107584709,LOC107686817,LOC107679737,LOC107562795 coding downstream 167241 4206958 ~ 4228964 (+)
G175703 LOC108271004 non-coding upstream 8694 4010238 ~ 4011233 (+)
G175527 NA non-coding upstream 405530 3614191 ~ 3614397 (+)
G175517 tmed3,p24b,LOC108271219,LOC107580748,LOC107750507,LOC108441851,LOC105913311 non-coding upstream 411083 3605162 ~ 3608844 (+)
G175493 NA non-coding upstream 437988 3579978 ~ 3581939 (+)
G175389 NA non-coding upstream 567107 3447942 ~ 3452820 (+)
G175744 NA non-coding downstream 128470 4168187 ~ 4168401 (+)
G175827 NA non-coding downstream 260388 4300105 ~ 4300563 (+)
G175843 NA non-coding downstream 328890 4368607 ~ 4368810 (+)
G175894 NA non-coding downstream 346068 4385785 ~ 4385994 (+)
G175905 NA non-coding downstream 469699 4509416 ~ 4509701 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 361637 3647355 ~ 3658290 (+)
pth1b NA other upstream 372812 3645743 ~ 3647115 (+)
G174546 NA other upstream 1941300 2078077 ~ 2078627 (+)
G174536 NA other upstream 1959644 2058970 ~ 2060283 (+)
G173898 NA other upstream 2654996 1361782 ~ 1364931 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 241527 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 573689 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 616888 4656605 ~ 4661136 (+)
LOC113536390 LOC108271079 other downstream 3082668 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 3228114 7267831 ~ 7271320 (+)

Expression


Co-expression Network