wipf2a (LOC108270800)


Basic Information

Item Value
gene id wipf2a
gene name LOC108270800
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21189248 ~ 21210539 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930296.2
TTGTAAACAAAACAGGTTTATGATAATAAAGTTTGGTGcttacactgttaaaaaaatggGCCTAATTGGAAATTTATTTGTtgaaagttcttttttttaggAGTTGGCTCTTAATAGTAGTCCAATAAGTAGTAAGAATGTCCATGGAGCTGCTCTGAGTCTGGTAAAGGCTTGCGCTACGAACAGCCTTCGGCTCTAATCGGAAGTATTCGGCTATCTGCCACCATTTTGTACTGCTTCCTGGACTTCCGGGTTTCTCAGAACTGGGATCTCTGCTGAAGCCCTAAAGCAGTGGCTTCCCTAAACTCACTTTTTCTGGACTAAAGGTTTACAGAGCAGGAGATTTTAGTATGCCTGTTGCGCCTATATTTCGTTAGTGTTTAGTTCTGAGTGAGAAGTTTATTGTagtttcatttactttttccaCCACCACTGCACTCAAGTGGATACCATGAAGCTCCGGTTCGTTAACGTTAGTTATTTagtttgcaggttttttttgtaactggtctgtccgtgtgtgtgtgtgtgtgagtttgaaaGTACCGGAGTACAAACCGGTTTGTTTCAATGCTGTTGGAGACCCGAATCGCTGAATAGCCGCAGAGCTTTTGTGAGCAGAAACATAGCTGCTGAGACTGAGGTGATAGTCACCATTCTTGGAGAAACAGCAACATGCCTAttcctccaccacctcctcctggACCTCCACCTCCCCCTTCCTTCAGCCAGGCAAACACTACCCCTCCCAAGCTGTCACGTGATGAAGCTAAAGGAAGAGGAGCCCTGTTGTCAGACATATGCAAAGGGGCCAAGCTGAAAAAAGTCACAAACGCCAATGACAGAAGTGCACCTATTCTTGAGAaacCTGGAGGgggcggcggcggcggcagcagtagtggaggaggaagtggaggGGGCTTTGGTGGCAGTTCGGGACCGATGCCAATGGGAGGCCTGTTTAGTGGAGGAGTGCCTAAACTTCGTCCAGTGGGAGACGGGACCGCTGGCAGAGCAGCACTGCGGCCTCCAGGGTCACGTCCTGCTTTGCCCCGTCCTACGAGCCAACAACCCAATGATGAGCGCTCCTCACCCCCTGAGCAACCTAGGAATTCCCGCCCATCCCTACCTGACATTTCCAAACCGGGCGGCGGCAGCACTCCGAAACCCAACAGCTCTGCCCCTCCTCCCCCTCCGCCTTTCAATCGACGTGGCAATAACCCTCCTCCCACCCCCAGTCAGAGCTCTGGCCGCTCTTATGGGCAAGAGAAGCCCCTCCCACCACCGAGTGTAAACAGAGCCCCTCCTCCCCCATCACCTGCACGTGATGTACTGTCAAAACCTTCTTCTCGTTCTTCACCTGTGCTTTCTTCATCGCTACCACCCCCTCCTCCTTACCGACAGCCCCCTTCAGTGGCTAATGATGATCCACCCCCTGAGTTGCCACAGAGGCGGAACTCGCTTCACAAGAGAACCAATGGGAATGCTCGTAGCCAAGCACCACCCCCACCACCGCCCCCACCCCAACAAAGCAGCCGACCACCACCGCCAGCTCGAGATCCTCCAGGACGCCGACCAGcctCCCAAGCTCCCCCCTCTGCATCCCGGAACGGGACTCGTGAcgctccccctcctcctcctcccccggCCCGTGTGCAAAGTGGTAGCTCTCAAAATTCTCACGAGAGCCGAGGGAGACCCCCACCACCCGTCTCTTCCAGTCGCCAACTCTCATCAcatccacctccacctccacctgtGCGCAATGGACACACGTCTGTCCCTAAGGCTTACGCTGatgagttTGAGTCCAAGTACTCCTTCCATCCTGTTGAGGATCTGCCACCCCCTGAAGAGTACAGACAGTTCACAAAAATATATCCCAGTAAAAGCAATAAAGCCATGATACGAGGAGCTCCCCCTGCACCACCTGTTGGGAGATGATCTGTACTCAAAGAGGAAAACGGCTAAACCTTTTGAATCTagttatatacacacacacacacacacacacacacaaacaaacactatCACAGCTGTATACAAAAGAGACCAGAAGCTGTCTTTAGTAGAATGCAAACTTTACCTGACTAACTGAAATATTCTCAGGTGAAGAGGATTTAGGCCATTAGTtaacataattttatatataatttaacataCTTTATaactaattatata
>XM_034308923.1
aagatcataggaagaagaaaagatttttctttttttttcaatgatattgtgatattgactaaCAAAGTCACTAGTACAACCCTGTTACCAAAATCATGGAGTGATgAGCTTTTGTGAGCAGAAACATAGCTGCTGAGACTGAGGTGATAGTCACCATTCTTGGAGAAACAGCAACATGCCTAttcctccaccacctcctcctggACCTCCACCTCCCCCTTCCTTCAGCCAGGCAAACACTACCCCTCCCAAGCTGTCACGTGATGAAGCTAAAGGAAGAGGAGCCCTGTTGTCAGACATATGCAAAGGGGCCAAGCTGAAAAAAGTCACAAACGCCAATGACAGAAGTGCACCTATTCTTGAGAaacCTGGAGGgggcggcggcggcggcagcagtagtggaggaggaagtggaggGGGCTTTGGTGGCAGTTCGGGACCGATGCCAATGGGAGGCCTGTTTAGTGGAGGAGTGCCTAAACTTCGTCCAGTGGGAGACGGGACCGCTGGCAGAGCAGCACTGCGGCCTCCAGGGTCACGTCCTGCTTTGCCCCGTCCTACGAGCCAACAACCCAATGATGAGCGCTCCTCACCCCCTGAGCAACCTAGGAATTCCCGCCCATCCCTACCTGACATTTCCAAACCGGGCGGCGGCAGCACTCCGAAACCCAACAGCTCTGCCCCTCCTCCCCCTCCGCCTTTCAATCGACGTGGCAATAACCCTCCTCCCACCCCCAGTCAGAGCTCTGGCCGCTCTTATGGGCAAGAGAAGCCCCTCCCACCACCGAGTGTAAACAGAGCCCCTCCTCCCCCATCACCTGCACGTGATGTACTGTCAAAACCTTCTTCTCGTTCTTCACCTGTGCTTTCTTCATCGCTACCACCCCCTCCTCCTTACCGACAGCCCCCTTCAGTGGCTAATGATGATCCACCCCCTGAGTTGCCACAGAGGCGGAACTCGCTTCACAAGAGAACCAATGGGAATGCTCGTAGCCAAGCACCACCCCCACCACCGCCCCCACCCCAACAAAGCAGCCGACCACCACCGCCAGCTCGAGATCCTCCAGGACGCCGACCAGcctCCCAAGCTCCCCCCTCTGCATCCCGGAACGGGACTCGTGAcgctccccctcctcctcctcccccggCCCGTGTGCAAAGTGGTAGCTCTCAAAATTCTCACGAGAGCCGAGGGAGACCCCCACCACCCGTCTCTTCCAGTCGCCAACTCTCATCAcatccacctccacctccacctgtGCGCAATGGACACACGTCTGTCCCTAAGGCTTACGCTGatgagttTGAGTCCAAGTACTCCTTCCATCCTGTTGAGGATCTGCCACCCCCTGAAGAGTACAGACAGTTCACAAAAATATATCCCAGTAAAAGCAATAAAGCCATGATACGAGGAGCTCCCCCTGCACCACCTGTTGGGAGATGATCTGTACTCAAAGAGGAAAACGGCTAAACCTTTTGAATCTagttatatacacacacacacacacacacacacacaaacaaacactatCACAGCTGTATACAAAAGAGACCAGAAGCTGTCTTTAGTAGAATGCAAACTTTACCTGACTAACTGAAATATTCTCAGGTGAAGAGGATTTAGGCCATTAGTtaacataattttatatataatttaacataCTTTATaactaattatatat
>XR_004579103.1
TTGTAAACAAAACAGGTTTATGATAATAAAGTTTGGTGcttacactgttaaaaaaatggGCCTAATTGGAAATTTATTTGTtgaaagttcttttttttaggAGTTGGCTCTTAATAGTAGTCCAATAAGTAGTAAGAATGTCCATGGAGCTGCTCTGAGTCTGGTAAAGGCTTGCGCTACGAACAGCCTTCGGCTCTAATCGGAAGTATTCGGCTATCTGCCACCATTTTGTACTGCTTCCTGGACTTCCGGGTTTCTCAGAACTGGGATCTCTGCTGAAGCCCTAAAGCAGTGGCTTCCCTAAACTCACTTTTTCTGGACTAAAGGTTTACAGAGCAGGAGATTTTAGTATGCCTGTTGCGCCTATATTTCGTTAGTGTTTAGTTCTGAGTGAGAAGTTTATTGTagtttcatttactttttccaCCACCACTGCACTCAAGTGGATACCATGAAGCTCCGGTTCGTTAACGTTAGTTATTTagtttgcaggttttttttgtaactggtctgtccgtgtgtgtgtgtgtgtgagtttgaaaGTACCGGAGTACAAACCGGTTTGTTTCAATGCTGTTGGAGACCCGAATCGCTGAATAGCCGCAGAGCTTTTGTGAGCAGAAACATAGCTGCTGAGACTGAGGTGATAGTCACCATTCTTGGAGAAACAGCAACATGCCTAttcctccaccacctcctcctggACCTCCACCTCCCCCTTCCTTCAGCCAGGCAAACACTACCCCTCCCAAGCTGTCACGTGATGAAGCTAAAGGAAGAGGAGCCCTGTTGTCAGACATATGCAAAGGGGCCAAGCTGAAAAAAGTCACAAACGCCAATGACAGAAGTGCACCTATTCTTGAGAaacCTGGAGGgggcggcggcggcggcagcagtagtggaggaggaagtggaggGGGCTTTGGTGGCAGTTCGGGACCGATGCCAATGGGAGGCCTGTTTAGTGGAGGAGTGCCTAAACTTCGTCCAGTGGGAGACGGGACCGCTGGCAGAGCAGCACTGCGGCCTCCAGGGTCACGTCCTGCTTTGCCCCGTCCTACGAGCCAACAACCCAATGATGAGCGCTCCTCACCCCCTGAGCAACCTAGGAATTCCCGCCCATCCCTACCTGACATTTCCAAACCGGGCGGCGGCAGCACTCCGAAACCCAACAGCTCTGCCCCTCCTCCCCCTCCGCCTTTCAATCGACGTGGCAATAACCCTCCTCCCACCCCCAGTCAGAGCTCTGGCCGCTCTTATGGGCAAGAGAAGCCCCTCCCACCACCGAGTGTAAACAGAGCCCCTCCTCCCCCATCACCTGCACGTGATGTACTGTCAAAACCTTCTTCTCGTTCTTCACCTGTGCTTTCTTCATCGCTACCACCCCCTCCTCCTTACCGACAGCCCCCTTCAGTGGCTAATGATGATCCACCCCCTGAGTTGCCACAGAGGCGGAACTCGCTTCACAAGAGAACCAATGGGAATGCTCGTAGCCAAGCACCACCCCCACCACCGCCCCCACCCCAACAAAGCAGCCGACCACCACCGCCAGCTCGAGATCCTCCAGGACGCCGACCAGcctCCCAAGCTCCCCCCTCTGCATCCCGGAACGGGACTCGTGAcgctccccctcctcctcctcccccggCCCGTGTGCAAAGTGGTAGCTCTCAAAATTCTCACGAGAGCCGAGGGAGACCCCCACCACCCGTCTCTTCCAGTCGCCAACTCTCATCAcatccacctccacctccacctgtGCGCAATGGACACACGTCTGTCCCTAAGGCTTACGCTGatgagttTGAGTCCAAGTACTCCTTCCATCCTGTTGAGGATCTGCCACCCCCTGAAGAGTACAGACAGTTCACAAAAATATATCCCAGTAAAAGCAATAAAGCCATGATACGAGGAGCTCCCCCTGCACCACCTGTTGGGAGATGATCTGTACTCAAAGAGGAAAACGGCTAAACCTTTTGAATCTagttatatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

NR:

description
PREDICTED: WAS/WASL-interacting protein family member 2-like isoform X1

GO: NA

KEGG:

id description
K19475 WIPF; WAS/WASL-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930296.2 True 2181 mRNA 0.50 8 21189786 21198474
XM_034308923.1 False 1682 mRNA 0.52 8 21189248 21198475
XR_004579103.1 False 2056 misc_RNA 0.52 9 21189786 21210539

Neighbor

gene id symbol gene type direction distance location
si:ch211-69b7.6 NA coding upstream 2184 21174029 ~ 21187064 (+)
abcc10 abcc10 coding upstream 15904 21156418 ~ 21173344 (+)
sp2 sp2,LOC107680542,LOC107753850 coding upstream 35626 21143071 ~ 21153622 (+)
socs7 socs7 coding upstream 47401 21131479 ~ 21141847 (+)
mrpl45 mrpl45,LOC107753856,LOC107680544 coding upstream 74755 21108593 ~ 21114493 (+)
krt99 NA coding downstream 59920 21270459 ~ 21277952 (+)
krt15 LOC108270790 coding downstream 79895 21290434 ~ 21292917 (+)
krt94 LOC108270801,LOC108438672,LOC103031381,LOC102787562,LOC102307626 coding downstream 110552 21321091 ~ 21324269 (+)
c11h6orf120 c10h6orf120,LOC103038725,LOC105905813 coding downstream 129404 21339943 ~ 21344414 (+)
mrpl4 mrpl4,LOC107680457,LOC107753863,LOC107597183,LOC107680460 coding downstream 135678 21346217 ~ 21351331 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding upstream 129020 21059064 ~ 21060228 (+)
G185418 NA non-coding upstream 164688 21002828 ~ 21024560 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding upstream 221347 20964535 ~ 20967901 (+)
G185330 LOC101478692 non-coding upstream 292787 20890247 ~ 20896461 (+)
G185206 NA non-coding upstream 481221 20705994 ~ 20708027 (+)
LOC113528706 NA non-coding downstream 26765 21237304 ~ 21248130 (+)
G185500 NA non-coding downstream 179812 21390351 ~ 21390568 (+)
G185501 LOC108270736,LOC105903432 non-coding downstream 180305 21390844 ~ 21391810 (+)
G185502 NA non-coding downstream 184823 21395362 ~ 21404052 (+)
G185503 NA non-coding downstream 196940 21407479 ~ 21409792 (+)
G184979 NA other upstream 1038354 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1317785 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1344010 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 1354834 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 1488974 19695227 ~ 19700274 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 41606 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 748349 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1101903 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2997337 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 3352861 24563400 ~ 24568643 (+)

Expression


Co-expression Network