LOC113536410 (pcdh20)


Basic Information

Item Value
gene id LOC113536410
gene name pcdh20
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5924209 ~ 5929129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930297.2
GCTGAAGGTGACGGATCTCCTCCGCGCTCAACATGTAAAAATAATCCCTCTGGACTAAACCACTGGCCGGGAAACATGTGCAACATACGCAAAGGTTCCTGCATTGTTAGGGAAGGAAAGTTCTggGGTTTTTGGATTCTCCTGCTGTACACAAGTCCGCTATCCTGCTTTTCAAAGTTCAGCCATCTTGTCTATAAGATAAAGGAAGGCTTACCCAAGGGGATTCTCATTGGGTCTATTGGAGAAGATTTAAAGTTGGATTTCTCCGTCGACCCCCCTCGTTTGTTCCATCTGGAGTTAAGGCAGAGTGGCTCTCAGTATGTTAATCTAGGTGACACAACCGGGGAGCTATACACTTCTGCTTTGGAGATTGACCGAGAGACTCTATGTGCAGATTCCCACGAGGGTCAAGGATGCACTATCTCTCTGGACGTGATCATTCTGCCACAGCAGTACTTCCAGCTAGTTAAGATCAAAATCATCATTGAAGATGTTAATGACAACAAGCCACATTTCCCAGTGGATGAAATCAGGGTGTCTGTGCCGGAAAATGCACCAGTCAACGCTCGGTTTGTGGTAGAGCAATCTGCTGTGGACCCAGATATAGGCATTTATGGGGTTCAGACTTACTGGCTGGCTAATGACTTTGGAGTTTTCACACTGGACGTTGAGCAAAATGAAGGGGGGGAGTTGACGCCTTTTCTGATTATAACTGGGCCGCTGGACAGGGAAACAAAAGCGGAATATTTAACTGACTTCATTGCTGAGGACGGAGGCTCTCCACCATTTTTGGGCACTGCCACTCTTAGAATTATCATCACAGACGTAAACGACAATTGCCCCAAATTCAGCGAGACTCAGGTGAATGCGACACTTTCTGAAAACACCACAAAGGGCTCACAGTTGGCCCGTGTCTATGCCTTTGACCCAGATCAGGGTACCAATGCTCAAATTACTTACACTTTCAGTAAACGGGTTACCCGAGAAACTAGGAACATGTTTCATTTGGATGAAATCACAGGGGTCATCAAGCTAGCTGAAAAGATTGATTCTGACACTGGAAAGTTGTACAAGTTGGTTGTGCTGGCTAACGGGCCAGCTTGCATACCTGATATTGCTACTGTCACTGTGGAGGTTGTTAAACGGGTTTCGGGACCACCAGCCATCATACCCCGTTACATTGCTTCAGAGAAAGATGGTGTGGTTTCTCTGAGTGAATCAGAGCCACCTTTTACACCAATTGCTTTCTTTACCATAAAGAATGCAGACCAAGGGAAGAAGGTAACATGCTTTTTGCAAGGGCCTGGACCATTCAGGCTCTTGccatataaaaatgtgaaaaatgagtACTTGCTGGAGACTACTGATCTGTTGGATTATGAAGAGCAGAAATATTATGAACTCACTGTGGTGGTCAGAAACAGTGATGGTGTAGGTGTTGAGACACAGGTGAAAGTGCAAATGTTGGATGATAATGACAATGCACCCATATTTAAGCAGTCAGTTATTGACATCAAGATTGAGGAGAACAACGCTCCAGAAACATTTCTTACTAAACTCCAGGCCACTGATGAGGATAGCGGTAACAGGGGTGAGGTACTCTATCTTCTTGGGTCAGATGCTCCCCCAATCTTCCATCTTGATCGGTTGACTGGGGTCTTGACTGTGACCACATCTCTTgacagagaggagaaagagaccTACCGGTTTATAGTCCGAGCAGTTGACTGTGGCACACCAAGGAAGGAGTCAATTGCCACAGTTTCAATCACCGTGCAGGATCGCAACGACAATAGTCCTCGTTTCATCAACAAAGATTTCACCTTCTTCATTCCAGAGAACTTCCCAGGATTTGGGGAGATTGGAGTGCTGTCCGTCACAGATGCAGATGCTGGGGAAAATGGCTGGGTAGCACTATCAATCATCAATGGAAGTGACATATTTGTCATTGACACAGGAAGGGGGGCATTGAGAGCAAAAACCCCACTGGACAGGGAGCAGCAAGGAACATACTATCTCTGGATTGAAGCTGTAGACGGGGGTAAGCCTGCACTCTCCTCTGTCACCATGGTTACTATTTTGCTCCTGGATGTCAATGACAACCCACCACTGGTGCTGTTTCCCCAGTCCAACCAGTCCTACTTGCTGGTTCTTCCCAGTACACTTCCAGGAACATCCATCACAGAAGTCTACGCCGTGGACAGGGACACTGGCATGAACGCTGTCATTGCTTACAGCATCATCAAGCAGGGTGGTGAACCGGGCTCATTTGACATAGACCCAGATACAGGAAACATCACCCTCAGGAAAGTCTTGAGTGACCGCGGCCTGTACAgcctgctggtcaaagtcagtGACCACGGCCAACCTGAACCACTACATTCCACTGTCATGGTCAACTTGTTCGTCAATGAGACCATCAGCAATGAGACATACATTCAGAGCCTCTTGACCAGAGAGGCAGATATCGGGATTGAGGAGGTCAGACCACCAAACAGGCTCGCCCAGGGGCCAGAGTATAACGAACTCTTCCCCTGCAAACTACTACTTATTGCCCTTAGCACCACCTGTCTGGGGCTTCTCCTTATAGTGGTGTCACTGACTGCATATATATGCTGTAAGAggcaaaaaaatcataaaaagaaGAGATTGGAAGTAGAGATCcctttaaaaatgaacagtgaCAGGCAAGCCATGGACAGGAAGCTCATGGAAATTTCTAACATATGACCATGGCCCCCCTCAACTGTctacaaatgtaaaatgtgcagCTTCTCCAGACAAACAAGTGGATTACAAACTGAGaaaattgtatatattgtatatttgatgttttgtaattttatgacaaaaagacaaaatatatttaaaaaaatgctaaaaaggtCACATCAAAAGTGTGTCTAGTTTTGCAAAGCGACATTTTCTCAAATGCTTGATTATATCACACTGTAATTTATTACACCCTCAGCAATGTGTCAAACTTCCCTTTTTGTTCAGTAATTGTTAAAATCATTCTCTATTCTGCAAGCacaatatttgtgttttatgaatattgaacatgaaaaacagaaatatcacTGTACAGTGATAAGCAGAAATCCTTACGACATTGCCACGCTGAATTCATTAGTGAATATTTCATGCATTTTGTGTGGGATAAAGGATATGTCTATCTAGACTTCTGTCCATTAACTCTATACTGTTAGTCCACTGAACACCTGGATTTCCAAGGTCAGCTTGGTTTATTAGAGTCTGTGATGAAAATTTCACAGATTCTCCATCCTTCTCTACCAAAACAGAAATGTCTACGTTTACATGCAGCGTAATAATGTGGCTAATGGCTCAGTTGGAAATATAAATCAATTGAGATCAATTTCGATGGTGCTGAAATTTCTATCTGATTGAAAGACATAGAAAATGTGGAAGACGTGAACCTTTGTAAATTCAATTACATTCAAATCGGAATTGATTAAAAGATTCTGTGCATTTTGTCATACTGGCTAACAAaacaaatttcattataaaatataaaagatttaaaaaaaaaaattttaatcttttatattgAATGAGGTCTAAGATGGGCATCCAGCTACTATTTTGAATTATGTTAGTCTCAGCTAGACGTACATTTGGatttgttaaaaacaaacaagagcATTGTTAACACAGTGAACTAACATTAGTTTCCTGTTCACTCAACTTTTTCtcgttgttgtttttataataTTGTGAAATGCCACTCCTCGAATGCACACAAATTTGGTTCAACAtagatgtaaatgtaagtaCATGTAAATGGATAGTTTCAATGGACATTTGCCAAAGTTTACAAGTATAAACTGTTCATTCAGAATCTGCATTTGGAAAGAATTAATTCAGATTGACGAAAATCATTGCATGTGAACATAGCCAACAATTCATTCTGAGACCTCACGACCTTGTGACAACCTTGTGGTGTGTAAGTAAAGTGTACATGCATATTAAAGTGCTTTATTTTCTTAC

Function

symbol description
pcdh20 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930297.2 True 4008 mRNA 0.42 3 5924209 5929129

Neighbor

gene id symbol gene type direction distance location
rbbp9 rbbp9 coding downstream 65883 5854377 ~ 5858326 (-)
srsf11 srsf11,LOC103035453 coding downstream 80366 5830751 ~ 5843843 (-)
plaat1 LOC108270879,LOC108435900,LOC107713876,LOC104947671 coding downstream 137665 5781225 ~ 5786544 (-)
LOC113536391 eif4a2,LOC107568626,LOC108267852,LOC107593804,LOC105889495 coding downstream 143056 5773557 ~ 5781153 (-)
sos1 sos1,LOC106564790 coding downstream 163487 5712448 ~ 5760722 (-)
eml6 eml6,LOC107597181 coding upstream 19919 5949048 ~ 5998137 (-)
sptbn1 sptbn1,LOC108270927,LOC108442064 coding upstream 72562 6001691 ~ 6084807 (-)
LOC113536414 c10h2orf73 coding upstream 156543 6085672 ~ 6094778 (-)
LOC113536415 acyp2,LOC105896825 coding upstream 170900 6100029 ~ 6109372 (-)
LOC113536569 LOC108271057,LOC108442067,LOC107741992,LOC107680499,LOC107657964 coding upstream 297965 6227094 ~ 6296876 (-)
G176556 NA non-coding downstream 209189 5631826 ~ 5715020 (-)
G176354 NA non-coding downstream 517110 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 810941 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 1077068 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 1083516 4839988 ~ 4840693 (-)
G176817 NA non-coding upstream 153699 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 243069 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 255206 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 331668 6260797 ~ 6261240 (-)
G176938 NA non-coding upstream 428445 6357574 ~ 6358087 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 215905 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 727391 5139610 ~ 5196818 (-)
G176307 NA other downstream 843314 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1419880 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1927756 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 927626 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1551293 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1651305 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1746787 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 2315520 8244649 ~ 8244721 (-)

Expression


Co-expression Network