LOC113536414 (c10h2orf73)


Basic Information

Item Value
gene id LOC113536414
gene name c10h2orf73
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6085672 ~ 6094778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930301.2
TCCCGTTGCCTAGCAACCCAAAATAATAAAGGCTACTCGAAAGTAAGGGACCAAGTGCACTCGTTAAACAGCAGTAGTAAGTGTAAAGTAATAAACATGTATCAGCGCGCGGAGATATACCTGCCCCGAAAGAAGAAGGTTCCAGAAGCCTTCCGCTCAAACACCTACAggatatttgatgaaaaagtcCCCGAACGATTAAATCCAGATGAGGCGTACAAGGACCACAAATATGCATCCCGAGATCCAGAAGTGACAGAGATGCTAAAGACACACAATATCCCACAGCCTTACAATGTCAAGTTCATCAGGACCAATGTGAGGTTCCTCAACGAGCCCATTGTTCATATGGAAACTGAGAACACAAAGGACGAACAGTGTAAATGGTGGCTGAATACACCGGACAAGAAAGTGCCTAGAAAAACAACATACAGTAAGGAGAGCACTCAGAGACGTGACTACCAACCGATCACACACATTCCAGTGACCAGGGTTCAAGAGGAGAGAACTAAGCTTCCAGCTACAGGAAtcaTTCCGACTTTGAGTCCTCTTGGCCAGCCTAAAGAATTAGTGGAGCACATGTCCTTCATTCACCAGTATGACTCCAGGAGAAATCATGACCAACCCTATCAAGGAAAAATGTATGTGTCCACTGGGACCTTCTCCACCCAGTCAAGCCCTGACCATGGGAACTCCTACAGCAGGAATGACAAGATGGCAGGGATCCCCGCTTAGGCTGGTGGGATCAAAGTCGCAGCGTGAACCATGCTGCACTTGGGTTTGGGAAATACGCAGTGAATCGTCCTTGCCGTCTCTGGTGTCATATCAGTCCTGTTACAAACTATAACTTATAATAAAGAGAATAATACATCTCCGTTTCTTTTCACAACTGTGTTGTGCATCGTATTATTGAAAACAGGTTTGCTGACTGaaattaagtaattttttttcacaaaaaggtAATAGAGCGTTCACCCTCAGATTCCTGCTTTCATTCAGATGATTCTATTTTCTAGAGATTTAATCAGTAGTGAATTATGAATATTCGGGTACTGCTCCTGTTATTTGTCCATATTTTAGCAGCTTACTCACTTTAAATGACCATATCACCACCAAAATAGTTCATCTGTggcacaaaacaaataaaatgtgatgtaaTGCTTGTGCCTTGACCCACCCAGTAAGAGCCACTGCTGTTCCATACGTTACAGTAATGCCTCATCAAATATGAATGCATTAAGGATGCACTGTATGGGAAAAAGTCCTGAGGTTTAAATGCTTAATGGAGAGGCTAAGAGTCCACCCACACAGACCACATTCTCATAACACAGAAACAGGGCAAGTGTTTATGTCCGGTTGTTTGTTTAAGCTGCAATGCACTTGACTTTGACACTAaacattatgtttaaaaaaaaggcatgtaCAGTTTTTTATCTTatgcactttatttttcaccCACAATTCTAATT
>XM_034308408.1
GTCCCGTTGCCTAGCAACCCAAAATAATAAAGGCTACTCGAAAGTAAGGGACCAAGTGCACTCGTTAAACAGCAGTAGTAAGTGTAAAGTAATAAACATGTATCAGCGCGCGGAGATATACCTGCCCCGAAAGAAGAAGGTTCCAGAAGCCTTCCGCTCAAACACCTACAggatatttgatgaaaaagtcCCCGAACGATTAAATCCAGATGAGGCGTACAAGGACCACAAATATGCATCCCGAGATCCAGAAGTGACAGAGATGCTAAAGACACACAATATCCCACAGCCTTACAATGTCAAGTTCATCAGGACCAATGTGAGGTTCCTCAACGAGCCCATTGTTCATATGGAAACTGAGAACACAAAGGACGAACAGTGTAAATGGTGGCTGAATACACCGGACAAGAAAGTGCCTAGAAAAACAACATACAGTAAGGAGAGCACTCAGAGACGTGACTACCAACCGATCACACACATTCCAGTGACCAGGGTTCAAGAGGAGAGAACTAAGCTTCCAGCTACAGGAAtcaTTCCGACTTTGAGTCCTCTTGGCCAGCCTAAAGAATTAGTGGAGCACATGTCCTTCATTCACCAGTATGACTCCAGGAGAAATCATGACCAACCCTATCAAGGAAAAcgtcACGGAGCCTTTGTGTGGAGCGAGAGGGGGGAGATGGGGCCCAGTGCATTCCAGAGCTCGGAGGGGCTTCGTTCGGACTCAGAGGGGAAAACGTACAATATGAACCTTTCCCAGCATGCCCTTCTGTCCTCTCCACAGATGTATGTGTCCACTGGGACCTTCTCCACCCAGTCAAGCCCTGACCATGGGAACTCCTACAGCAGGAATGACAAGATGGCAGGGATCCCCGCTTAGGCTGGTGGGATCAAAGTCGCAGCGTGAACCATGCTGCACTTGGGTTTGGGAAATACGCAGTGAATCGTCCTTGCCGTCTCTGGTGTCATATCAGTCCTGTTACAAACTATAACTTATAATAAAGAGAATAATACATCTCCGTTTCTTTTCACAACTGTGTTGTGCATCGTATTATTGAAAACAGGTTTGCTGACTGaaattaagtaattttttttcacaaaaaggtAATAGAGCGTTCACCCTCAGATTCCTGCTTTCATTCAGATGATTCTATTTTCTAGAGATTTAATCAGTAGTGAATTATGAATATTCGGGTACTGCTCCTGTTATTTGTCCATATTTTAGCAGCTTACTCACTTTAAATGACCATATCACCACCAAAATAGTTCATCTGTggcacaaaacaaataaaatgtgatgtaaTGCTTGTGCCTTGACCCACCCAGTAAGAGCCACTGCTGTTCCATACGTTACAGTAATGCCTCATCAAATATGAATGCATTAAGGATGCACTGTATGGGAAAAAGTCCTGAGGTTTAAATGCTTAATGGAGAGGCTAAGAGTCCACCCACACAGACCACATTCTCATAACACAGAAACAGGGCAAGTGTTTATGTCCGGTTGTTTGTTTAAGCTGCAATGCACTTGACTTTGACACTAaacattatgtttaaaaaaaaggcatgtaCAGTTTTTTATCTTatgcactttatttttcaccCACAATTCTAATT
>XM_034308409.1
GTGTCAAATTACTGCCTGTCCCGTTGCCTAGCAACCCAAAATAATAAAGGCTACTCGAAAGTAAGGGACCAAGTGCACTCGTTAAACAGCAGTAGTAAGTGTAAAGTAATAAACATGTATCAGCGCGCGGAGATATACCTGCCCCGAAAGAAGAAGGTTCCAGAAGCCTTCCGCTCAAACACCTACAggatatttgatgaaaaagtcCCCGAACGATTAAATCCAGATGAGGCGTACAAGGACCACAAATATGCATCCCGAGATCCAGAAGTGACAGAGATGCTAAAGACACACAATATCCCACAGCCTTACAATGTCAAGTTCATCAGGACCAATTGTAAATGGTGGCTGAATACACCGGACAAGAAAGTGCCTAGAAAAACAACATACAGTAAGGAGAGCACTCAGAGACGTGACTACCAACCGATCACACACATTCCAGTGACCAGGGTTCAAGAGGAGAGAACTAAGCTTCCAGCTACAGGAAtcaTTCCGACTTTGAGTCCTCTTGGCCAGCCTAAAGAATTAGTGGAGCACATGTCCTTCATTCACCAGTATGACTCCAGGAGAAATCATGACCAACCCTATCAAGGAAAAcgtcACGGAGCCTTTGTGTGGAGCGAGAGGGGGGAGATGGGGCCCAGTGCATTCCAGAGCTCGGAGGGGCTTCGTTCGGACTCAGAGGGGAAAACGTACAATATGAACCTTTCCCAGCATGCCCTTCTGTCCTCTCCACAGATGTATGTGTCCACTGGGACCTTCTCCACCCAGTCAAGCCCTGACCATGGGAACTCCTACAGCAGGAATGACAAGATGGCAGGGATCCCCGCTTAGGCTGGTGGGATCAAAGTCGCAGCGTGAACCATGCTGCACTTGGGTTTGGGAAATACGCAGTGAATCGTCCTTGCCGTCTCTGGTGTCATATCAGTCCTGTTACAAACTATAACTTATAATAAAGAGAATAATACATCTCCGTTTCTTTTCACAACTGTGTTGTGCATCGTATTATTGAAAACAGGTTTGCTGACTGaaattaagtaattttttttcacaaaaaggtAATAGAGCGTTCACCCTCAGATTCCTGCTTTCATTCAGATGATTCTATTTTCTAGAGATTTAATCAGTAGTGAATTATGAATATTCGGGTACTGCTCCTGTTATTTGTCCATATTTTAGCAGCTTACTCACTTTAAATGACCATATCACCACCAAAATAGTTCATCTGTggcacaaaacaaataaaatgtgatgtaaTGCTTGTGCCTTGACCCACCCAGTAAGAGCCACTGCTGTTCCATACGTTACAGTAATGCCTCATCAAATATGAATGCATTAAGGATGCACTGTATGGGAAAAAGTCCTGAGGTTTAAATGCTTAATGGAGAGGCTAAGAGTCCACCCACACAGACCACATTCTCATAACACAGAAACAGGGCAAGTGTTTATGTCCGGTTGTTTGTTTAAGCTGCAATGCACTTGACTTTGACACTAaacattatgtttaaaaaaaaggcatgtaCAGTTTTTTATCTTatgcactttatttttcaccCACAATTCTAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930301.2 False 1469 mRNA 0.42 5 6085672 6094760
XM_034308408.1 True 1611 mRNA 0.44 5 6085672 6094761
XM_034308409.1 False 1568 mRNA 0.43 5 6085672 6094778

Neighbor

gene id symbol gene type direction distance location
sptbn1 sptbn1,LOC108270927,LOC108442064 coding downstream 865 6001691 ~ 6084807 (-)
eml6 eml6,LOC107597181 coding downstream 87535 5949048 ~ 5998137 (-)
LOC113536410 pcdh20 coding downstream 156543 5924209 ~ 5929129 (-)
rbbp9 rbbp9 coding downstream 227346 5854377 ~ 5858326 (-)
srsf11 srsf11,LOC103035453 coding downstream 241829 5830751 ~ 5843843 (-)
LOC113536415 acyp2,LOC105896825 coding upstream 5251 6100029 ~ 6109372 (-)
LOC113536569 LOC108271057,LOC108442067,LOC107741992,LOC107680499,LOC107657964 coding upstream 132316 6227094 ~ 6296876 (-)
galnt18b galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200 coding upstream 263359 6358137 ~ 6461826 (-)
ctr9 ctr9 coding upstream 460941 6555719 ~ 6567757 (-)
ampd3a ampd3,ampd3a,LOC108433033 coding upstream 527126 6621904 ~ 6643123 (-)
G176556 NA non-coding downstream 370652 5631826 ~ 5715020 (-)
G176354 NA non-coding downstream 678573 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 972404 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 1238531 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 1244979 4839988 ~ 4840693 (-)
G176816 LOC108271104 non-coding upstream 77420 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 89557 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 166019 6260797 ~ 6261240 (-)
G176938 NA non-coding upstream 262796 6357574 ~ 6358087 (-)
G176959 NA non-coding upstream 363588 6458366 ~ 6459631 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 377368 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 888854 5139610 ~ 5196818 (-)
G176307 NA other downstream 1004777 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1581343 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2089219 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 761977 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1385644 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1485656 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1581138 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 2149871 8244649 ~ 8244721 (-)

Expression


Co-expression Network